RNA id: XM_036934938.1


Basic Information

Item Value
RNA id XM_036934938.1
length 4636
RNA type mRNA
GC content 0.55
exon number 26
gene id oplah
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14340137 ~ 14361493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccaatataaccctgttacacatGCACGTAGCCTAAACGTTTGTTTGCGGACCGCCATGTCGAATAAGTAGAGCCCGAAGGCAAAGGGGTGGAGTGTAGTCTTTAGTAAATTAGAAACCATACTGACTTTGGTAACCAGAGCAGAGATCTCCAGCATTgaggtgagagggaggaaggagaacgGCAAAGGACGATAGACGACTGGCAAGGATTTGCGACACATCGGATCATCAGTGATAAACCCAGAGCAAGAAGACTCGAGACTGGGCAGGCATTTCCCAGGGAACAGCCTGTGGAGACATCCCTGATTGGCTGGATCAGGATGGGCACCACAGTGGCGACCAATGCCCTgctggagaggcagggagagcgGACTGCCCTCCTGGTCACAAAGGGGTTCAAGGATCTGTTGCATATTGGCACCCAGGCCCGGCCAAAGCTCTTCGATTTGgagGTGGCTGTTCCAGACGTGCTGTATGATGAGGTCATTGAGGTTGATGAGAGGGTTGTCCTTAGACAAGATGGCTGCCAGCTACCCAGGAAAGAACCCAAGCGTATTGTCACAGGCAGTACAGGGGACTCCCTGGAGGTGTGGCGTGAGCTGGACATGCAGCGTGTGGAGGACGATCTGAGAGGAGTCCTGTCCCGGGGGATCCACAGCCTGGCTGTTCTGCTGCTACACTCCTACACGTGGTCTGCCCATGAGAAGGCTGTTGGGTCATTAGCGCGCAGGCTGGGTTTCACCCAAGTGTCCCTGTCCAGTGAGGTCATGCCCATGGTGAGGGCAGTGCCACGCGGGTACACCGTATGCGCCGATGCCTACCTCACACCTAAAATCCGCCAGTACTTGAAAGGCTTCACCTCTGGCTTCAGAGGTGGACTGGAGGGTGTGAGTGTTCTCTTCATGCAGTCTGATGGCGGTCTCACCCCCATGGAGCAGTTCTGTGGGTCCCGGGCTGTGCTGTCTGGGCCCGCGGGGGGGGTGGTGGGCTACGCCATCACCTCCTACAGCCAGACAGAGAACAAGCCCGTCATTGGGTTCGACATGGGGGGCACGTCTACAGATGTGAGTCGCTACGCGGGTCACTATGAGCACGTGTTTGAGGCCACCACAGCTGGCGTCACCCTGCAGGCCCCACAGCTAGACATCAACACCGTAGCAGCAGGCGGTGGCTCCCGCCTCTTCTTCAGGTCAGGGATGTTTGTTGTGGGTCCAGAGTCAGCTGGTGCCCATCCAGGACCAGCCTGCTACAGAAAGGGTGGTCCTCTGACTGTGACGGATGCCAACCTGGCTCTGGGCCGCCTGCTCCCCTCCTACTTCCCCAGGATCTTTGGTCCTGGAGAGGACGAGCCTCTGTCCAGCGAGGAAACCATGGAGCACTTCCAACAGCTCACCCGCGAGATTAACCACTTCCTCTACACCAACCAATCCCAGAGCAGCGCCAACGGAAGCGCCCATTCAAACAGCAGCAGGGTCATGGGCAGCAAATCAGAGATGAGCATGGAGGAAGTTGCTATGGGTTTTATCAGAGTGGCCAACGAAGCCATGTGTCGTCCCATCAGAGCACTGACACAGGCTAAGGGTCATGACACCTCTCAGCATGTGTTGGCATGTTTCGGTGGAGCAGGTGGGCAACATGCGTGTGCCATCGCACAAGCTTTAGGTATGAAGACCGTCTTCATTCACAAGTACAGTGGTGTGTTGTCGGCCTACGGCCTGGCGCTGGCTGATGTGGTGGAGGAGGTCCAAGAGCCATGCTCTCTGCAGTACAACCCTCGCTCCTTCTCTGAGCTGGACCACAGGGTGGAGCAGCTGACCCAGCGTTGTACAGAGACCCTGAGAGACCGCGGCTTCAGCAGctctcagATAACCACTGAGGTTTTCCTCCACCTGCGTTACGAGAAAACAGACTGTGCTCTTATGGTGACAGCCACAGGTTACCCCGGCAACTCTCGGTCTTGTAAGTCAGGGGACTTCCGTAGTGCCTTCACTAAGCGcTACCTGCAGGAGTTTGGCTTCACCATCCCAGACCGGCCAATCATGGTGGATGACATCAGAGTCAGGGGCTCTGGGAAGTCCGGAATCAAATCTGTGACCAACACCAAGATGGGATCTGGAATTCTCAAAGCCACTACGATAACCAAGTGTTACTTTGAGGATGGTTACCTGGATACAAGTGTTTACCTGTGGGAGGAGTTGCCATGTGACCACAATATCCCCGGTCCAGCCATCATCATAGACAAGAACAGCACCATCCTGGTGGAGCCCAGCTGTGTGGCCCATCTGACAGAGGGGGGGGATGTGTGCATCGCTGTGGGCTCCGACCCACACTGCCTCCTGGGAACTGAACTCAACACTGTGCAGCTGTCCATCTTCTCCCATCGCTTCATGAGCATTGCAGAACAGATGGGCAGAGTGCTCCAGAGAACCTCCATCTCCACCAACATCAAGGAGCGTCTGGACTTTTCCTGCGCTGTGTTTGGTCCTGACGGAGGCCTGGTGTCCAACGCACCACACATCCCTGTTCACCTGGGAGCCATGCAGGAGACCGTCCAGTACCAGATCAAATCCATAGGGAGCATCATTAAAGAGGGTGATGTGATTCTGAGTAACCATCCATGTGCAGGAGgcagtcacctccctgacctcaCTGTCATCACACCGgtGTTCAGGAGTGGTGTGAGTGGGCCAGTGTTCTTTGTGGCCAGTAGGGGGCACCATGCAGACATCGGGGGGATTACCCCGGGCTCCATGCCCCCCCACTCCACCTCCCTGCAGCAGGAGGGTGCTGTCTTCACCTCCTTCAAACTGGTCACTGCTGGAGTCTTccaggaggaggCTGTAACGGAAGCTCTCATGGCTCCGGCTCAGTACCCAGACTGCTCTGGGACTCGCAATCTCCATGACAACCTGTCAGACCTGCGAGCTCAAGTGGCAGCCAATCAGCGAGGGAGCACACTGGTGGGGGAGCTGATTGACAGCTATGGGCTGGCTGTGGTGCAGGCCTACATGGGGTACATCCAGACCAATGCAGAGCTGGCGGTGAGAGACATGTTGAAAGAGTTTGCCCGTTGCCGGCAGAAACAGACGGGCTCCTTGGAGGTGGAGGCAGAGGACTTCATGGACGATGGAACACCAATCAGATTGCGGGTCCAGATTAATGAGAACGAGGGCAGTGCAGTGTTTGACTTCACAGGGACGGGGACAGAGGTGTGGGGGAACTGCAACGCCCCTCGTGCCATCACCTTCTCTGCCCTCATCTACTGCCTGCGCTGCATGGTGGGCCAAGACATCCCCCTCAACCAGGGCTGTCTCACTCCAATCAAGGTCATCATTCCCAGCGGCTCCATTCTTCAGCCTTCCCAGAATGCCGCTGTGGTGGGGGGGAATGTGCTGACGTCACAGCGGGTGGTTGATGTCATCTTCCGTGCCTTCGAGGTCTGCGCTGCCtcacagGGCTGCATGAACAATGTGACTTTCGGTAGCGAGGGGAGCGGTTACTACGAGACGGTTGCCGGGGGAGCAGGTGCTGGTCCAGGCTGGACTGGGCGGAGTGGTGTCCACAGTCACATGACTAACACACGTATCACCGACCCAGAGATTCTGGAGAAGAGGTACCCTGTGGTTCTGGAGCACTTCTCCCTGCGGCCCGGCTCGGGGGGTGCAGGGGAGTACCGTGGGGGCGACGGGGTGATCCGGAAGCTCCTGTTCAGGAATAAGGTGGTCCTGTCAGTTCTGACAGAGAGGCGCTCCACCCGACCCTATGGTCTCCATGgGGGTGACTGTGGGGCATCAGGCCTGAACCAGCTCCACAGAGCAGATGGAAGGGTTCTCAACCTGGGGGCCAAGACCACTGTGAGCCTGGAACCCGGGGATATGTTTTGCCTGTACACACCTGGTGGAGGTGGATATGGTGAGGAGGACAAGCAAACAGCTGGGGATGGAAGACTCCTTAAAAAGCGCAGGCGCTTCAATGACAACTTCTCTGAGAGGGGCAGTGTGTTTGAGTATCGCATGGCACAGGAGGGTGTATGAGGACAGGCGACAGGCCAGGGCTGGAGGGGAGAGACCTAGAAACACAGTTCCACTAAGATGAGATGTGCTGAGAAACTCCGCCAAAGATGGAGACAACAATGAAGGCTGGAGAGAGCATTAAATGCTAATGCATTCATGTCCCGTTTTTAGGCCTTGAGCAATGCCTTTTTTTTCATGTCTGTAGTCAACAACCCATACTACGGTGTTTAAAAGGATGCTAGTGCTTTACAGTACTTTTGAGTTTGCACAGAGACAAACATGGAAATTGTTTCACCGGTAGGGGAGTTAATCCTCTGAAGACAGTAAACCTTTAGCCCTAGATTCATTCAGGTCAAGGGTTAACCTGTGTCAACAGTATCGTTTGTTGTATTTTCCTTTAAGCTTAGGCAGTGTGTTAAAGCTATCTGTAGACATCTAGTCTGCTGCCTCTCACCACAACTGATTAGAAACAGGATGTAAAAGCAACACTAGATTATACAGTTGTATGGCTTCAAGGGTGTTAACTAACTAGACTTGAAACATTACTCTTCAAATCTGTTGATGTAACGAAGACTAGCCGACCTTTGGATCAGATGGATACAGTAAATCGCTGCATTGGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01469 OPLAH, OXP1, oplAH; 5-oxoprolinase (ATP-hydrolysing)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079409 lncRNA upstream 3516 14334335 ~ 14336622 (+) True G946649
TU1079406 lncRNA upstream 30353 14307701 ~ 14309785 (+) True G946646
TU1079424 lncRNA upstream 38218 14301667 ~ 14301920 (+) True G946664
TU1079423 lncRNA upstream 38930 14300970 ~ 14301208 (+) True G946663
TU1079390 lncRNA upstream 61998 14277039 ~ 14278140 (+) True G946635
TU1079454 lncRNA downstream 39311 14400804 ~ 14401022 (+) True G946691
TU1079457 lncRNA downstream 41447 14402940 ~ 14403169 (+) True G946694
TU1079459 lncRNA downstream 44915 14406408 ~ 14406709 (+) True G946696
TU1079441 lncRNA downstream 81261 14442754 ~ 14444395 (+) True G946678
TU1079470 lncRNA downstream 98513 14460006 ~ 14460219 (+) True G946706
LOC110536553 mRNA upstream 10648 14321792 ~ 14329490 (+) True LOC110536553
XR_005034574.1 mRNA upstream 18568 14318742 ~ 14321570 (+) True LOC118936448
XM_021620218.2 mRNA upstream 119638 14212415 ~ 14220500 (+) False ssr1
XM_021620219.2 mRNA upstream 119638 14212419 ~ 14220500 (+) True ssr1
XM_036936641.1 mRNA upstream 129792 14209150 ~ 14210346 (+) True LOC118937467
XM_036934945.1 mRNA downstream 11140 14372633 ~ 14394906 (+) False LOC110535311
XM_036934946.1 mRNA downstream 11140 14372633 ~ 14394906 (+) False LOC110535311
XM_036934947.1 mRNA downstream 11140 14372633 ~ 14394906 (+) True LOC110535311
XM_036934951.1 mRNA downstream 44517 14406010 ~ 14421353 (+) False si:ch211-217a12.1
XM_036934952.1 mRNA downstream 44520 14406013 ~ 14421353 (+) False si:ch211-217a12.1
TU1079402 other upstream 10802 14318665 ~ 14329336 (+) True G946642
TU1079403 other upstream 21515 14318008 ~ 14318623 (+) True G946643
TU1079404 other upstream 25820 14310575 ~ 14314318 (+) True G946644
TU1079302 other upstream 137139 14171542 ~ 14202999 (+) True LOC110535304
TU1079304 other upstream 169261 14155354 ~ 14170877 (+) False LOC110535304
TU1079453 other downstream 38369 14399862 ~ 14400273 (+) True G946690
TU1079455 other downstream 39761 14401254 ~ 14401644 (+) True G946692
TU1079817 other downstream 221050 14582543 ~ 14584049 (+) True G946999
TU1079869 other downstream 304233 14665726 ~ 14669756 (+) False LOC110535322
TU1080168 other downstream 525121 14886614 ~ 14887282 (+) True G947301

Expression Profile