RNA id: XM_036934947.1


Basic Information

Item Value
RNA id XM_036934947.1
length 5010
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110535311
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14372633 ~ 14394906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgcatttccttagaccactgcgccactcgggaagctTCTGTAATTGCGTTGGTGAACATGCACCCGAATTTCTGAAGtgtcctgttagggtgaaggAGACTGAGGCGGTAAGAATATGGACTGTCCAGCATGTCCTATCCGGAGGCGGTGAGAAGAGTGGAAGAACTTTGGAAGAACTAGTGGAaggacttttattttttttattttttttttaacagcagAGGCATTACAAGGAATGCTGTCGATGAATGCTCCATCTTCACATGCACCCGAGCCTGTTTATGGATGGGATTTGAACTGTGACTGAAGGAGTgagatgtttaaaaaaaaattgtatagcCTCGTGTTCCCACCCCATCCcgcaattaaatatattttgtttcaaTACCCGGTGCAGTAGATGGCGGCAATTGACCTACACCAATAGGTGTATTCTGCCAAACAAccttaaaaagaagaagaagaatatgaCAGCGCAGCGGTTGTTATGGAGAAGCATTTCCCCGGAGGGCTGGAGAAACATTGGAGAGCTGGCGTTGGGGACAGAAAGCAGCTGATCGGTTTCAGACGGGCTGAGAACACGAGCTCGCGCTTCTGTCAGACTGAATGAACTCCATAGGTAGACCTCAGTTTGGAGTTGTTTCCCTGGTCCTGACAGATCTTTGATGTATTGTCCTCGTCCACCCCTCAGGTAGACCTCAGTTTGGAGTTGTTTCCCTGGTCCTGCCAGATTTTGATGTATTGTCCTCGTCCACCCCTCAGGTAGACCTCAGTTTGGAGTTGTTTCCCTGGTCCTGCCAGATCTTTTATGTATTGTCCTCGTCCACCCCTCAGGTAGGCCTCAGTTTGGAGTTGTTTCCCTGGTCCTGACAGATCTTTGATGTATTGTCCTCGTCCAGCCCTCAGGTAGGCCTCAGTTTGGAGTTGTTTCCCTGGTCCTGCCAGATCTTTGATGTATTGTCCTCATCCACCCCTCAGGTAGGCCTCAGTTTGGAGTTGTTTCCCTGGTCCTGCCAGATCTTTGATGTATTGTCCTCGTCCACCCCTCAGGTAGACCTCAGTTTGGAGTTGTTTCCCTGGTCCTGACAGATCTTTGATGTATTGTCCTCGTCCACCCCTCAGGTAGGCCTCAGTGTGGAGTTGTTTCCCTGGTCCTGCCAGATCTTTGATGTATTGTCCTCGTCCACCCCTCAGgtgtCAGGGGAGGGAGGTAGAATGTTATGTATTCTCAGCAGCACAATGGATCCTTGAGACGCCTTGATGCCGGACTCTTCCTGGTTTCTGAAGCACCACCTGCACTGGCCTATTACAGGACTAGAAGACTGACAAGTGATCCAATCCCATGCAGCCCCCACCTCTGACCAACCTCTGCCCTTCCATTCTCTCGTACTATTGCACTCTGAATTAAGGTTCTGTGCAGTATTAGTTCAAatgtctttatttaaaaaatgtttttacctcattgatattgtttttcatttttttttaaattatttcgtttttttttaatatacagGGATCTGACGATACAATACTTAGGCGCCGATATGTATGGTGTTTCTCATGATTATTGTGATTTGATACTGTGATTTTTATTGgcatttgatgttccaaacatattgctcaccacaTGTCGGCTGCAGAGAGTCTAGAGAAAGCATGATAAAATGAGTTTCGATCATTCATGGAAATAAGTGCTGTGAACATGTTGGCTCATTATTTAAGAAGATGGAGAACCAGTTATAGGATGACGAGTGCTAGCTAACGCTTCCTAGcaagaaaaatacattacaaatcGAAAGTAGCGATTTATAATGGAACTATATCGATTTATAATCTTTTTTTTAGCGGCGATATGGATTTAAGGACTGAAATATGGTTCAAAGTAATTTTTCTTCACTTTCTACTGCTAAAATCCAGAACCAGATCAGACCAGTGAAACAGGAcaacagaggggggagggggtgggcATTGGTGTGGCATGGCGGAGCACGGCGAGCTGCTCGGTGAGATGGCCACGATTGGGCGTCTGAGCGCCACGGAGCGCTTGAAGCATGCCCAGAAGCGGCGCGCCCAGCAGCTAAAAGGCTGGGCCCAGATGGACAAGGACATGGCCCGCAGCGCGGGTAAGGCCGGCCAGAAAAGCAACAAGAAGGGGCGCACGCGCAGGGTGGTCTTCCCCAACAACATCACTCTGCTGGAGGCTGCAGCCCGCAATGACCTGGAGGAGGTGAGGGAGCTGCTGAACGGTGGAGTCAGTCCAGATCTGTACAACGAGGACGGACTCACTGCCCTTCACCAGTGCTGCATTGATGACTTTGTGGAGCTGGTACAGTGTCTGTTGGATGCCGGGGCCAGTGTGAACGCCTGTGACAGTGAGCTGTGGACGCCACTTCACGCTGCTGCCACCTGTGGACACACAGACCTGGTGCAGCTCCTCGTGCAGTCTGGAGCAGAGCTGCTGGCTGTCAACGCTGATGGCAACATGCCCTATGACCTTTGTGAGGACGAGGCCACTCTGGAGCTGCTAGAGATGGTCATGGCAGAGCAGGgTATAACCCAGGACCGTATAAACCGGTGTCGTGGGGCTAAGGAGATGAATATGCTCACAGATATTCGAGTGCTGGTTCAGAATGGAGCGGACCTGAACGCTCAGGATGACAACGGGGCCACGCTACTGCACATAGCGGCGGCTAACGGCTACTTGTTGGTGGGGGAGCTGCTACTGGAGCACCGGGCCAAGGTGGAGCAGAAGGACACGGACGGCTGGACACCACTCCACGCCGCCTCCTGCTGGGGACAGATTCTGATGGTGGAGCAGCTGGTGGCTCATGGGGCCAGTCTCAACACCAAGTCTGTCCTGGAAGAGACGCCGCTGGATGTGTGTGCTGACGAGGAGGTGAGAGTCAAGCTGATGGAGCTGAAGCACAAACACGACGCAATCATGAAGAGTCATGACCGACACAAGGGCACCTTGCAGAGACGAGCCTCCAGCACTGGCAGCAGAggTAAGGTGGTGCGGCGTGTGAGCGTCAACGAGCGTTCCAGCCTGTACCGGCGGGAGCACCACAAGGAGGCCATGGTGTGGCAGGAGAGAGGCCGGCAGGCCGAGCCGCAGGACGACGAcgaggacagacagacggacaacGAGCTCCACCATCACGTTGCCATGGCTGCAGGTACCATGTCGAGGCTGGAGAATGAGGAGGGAGCGGAGAGGAAGTCTAGTCTGGGGAACGGTGGGACGCCCCTTGCCCTCTCGGCGTCTGTCCCAGGGGAGCAGTGGAGTAGAGGTCGGATGGACCGTAGTGCCTCCTACCAGCTGAGCCCTGCCTCAGGGTCTGGGGAGGAAAGGGACAACATGACCCTGGAGAAATCCCACCAGACTCTAGCTGACCTGAAACGCCAGCGGGCTGCGGCCAAGCTCAACAAGTACCCCGCCCcacctctactccctccctcagAGGAGgagcctccctctcccacccctctgCAGGAGGTGACCCCCTCCCGAGCCGCCCAGGAGACCCCCAGCACAGAGGTGGCCTTTCCCAGCGCTGTGTACTTCACTCCAGCCAGTGGGGACCCGCCCCTGCTCAAACTACGAGCCCCAGAGGAGGACACGTCCAACAACACCAAGGAGCCCTGCTGTGGAATCAtgtagagacacacaaacactcccaaGCCACAAtgtagagacacacaaacactcccaaGCCACAAtgtagagacacacaaacactcccaaGCACCCACTGCCTGACTGGAAATCAGGGGATGTGTAACACTCCTATGTGGCAAACCGATTTCAAGTCAAAACACTACGGTGACCACCAGATATACTTTTAAGGATTCATTGCAGTTTGATTCATTCTAAGCATATTATTTGGTTCCGTCAATGATATGCCGTTGAATGTTTGGTCTTAACTCCATTTTAGTAAATGTAGTAGTACATTTTATCTTCTTGCACAGATTTATTTTAAACCCTCCTTCCTGAGAAATGTCAAACATTTAATATATGAGCACTTAACGTAATGTTCCTCATTGTTCCTCTGAGGGTGTGGCCAGAGGGGTCTATTTGGATCTCAGGAGACCTTATGTGGCCACCTGGTGGCTTTTTAGGCTGTGTGTAGAGACCTACAGATTCCAGTATTACTCTTGCAATAGCACTGAGTACTTTCCTCTTAAGTCCCTTTTTTCATGTGTGTTTGGGGCAGTTCAATAAGAGTTCTCACACAGGATGTATCAAGCACATACTATATGAATTGGTCATCTGACTTCAGTgagtaagctgtgtgtgtgtattcaaagCAGAAAAGGGGCAAGAGCAGAATGAACCAAACCTGATTATTATGCTTTTTTTCAAGCTGATAATCGGACCAATGAATGATTTTTCCTACTTATGATTGACTGAACATGATTTGAGATGTGCACTGTAACTTGATGTGCACTGTAACTTGATGTGCACTGTAACTTGATGTGCACTGTAACTTGATGTGCACTTTTTGATTGAAGGGAAGCACGGATTATGATCGAGAGTGAGGCGATTTCCTAAAGTGATTGATACAAAAGGGTACATGATAGCATTTATTGATCTGACAGTGCAacctgaaagtattcagaccccttgacttttttcctaattttgtttcattacagccttattctagtttttttccccccctcaatctacacacaataccccataatgacaaagcaaatgtattacaaattaaaaaaacagaaatcacttttacataagtattcagaccctttactctgtacttttttgaagcacctttggcagtgattacagcttcgagtcttgggtatgatgctacaatgTCATGCTTCAACATAAGGATGGTATTTGCCAGGTGttgagcagtgcctggtttcctccagacgtgacgcttggcattcaggccaaaagttcaatcttgttttcatcagaccagaaaatgttgtttctcatggtctgagtcctttaggtgccttttggcaaact

Function

GO: NA

KEGG:

id description
K17458 PPP1R16A, MYPT3; protein phosphatase 1 regulatory subunit 16A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079409 lncRNA upstream 36011 14334335 ~ 14336622 (+) True G946649
TU1079406 lncRNA upstream 62848 14307701 ~ 14309785 (+) True G946646
TU1079424 lncRNA upstream 70713 14301667 ~ 14301920 (+) True G946664
TU1079423 lncRNA upstream 71425 14300970 ~ 14301208 (+) True G946663
TU1079390 lncRNA upstream 94493 14277039 ~ 14278140 (+) True G946635
TU1079454 lncRNA downstream 5898 14400804 ~ 14401022 (+) True G946691
TU1079457 lncRNA downstream 8034 14402940 ~ 14403169 (+) True G946694
TU1079459 lncRNA downstream 11502 14406408 ~ 14406709 (+) True G946696
TU1079441 lncRNA downstream 47848 14442754 ~ 14444395 (+) True G946678
TU1079470 lncRNA downstream 65100 14460006 ~ 14460219 (+) True G946706
XM_036934937.1 mRNA upstream 11140 14340137 ~ 14361493 (+) False oplah
XM_036934935.1 mRNA upstream 11140 14340138 ~ 14361493 (+) False oplah
XM_036934938.1 mRNA upstream 11140 14340138 ~ 14361493 (+) True oplah
LOC110536553 mRNA upstream 43143 14321792 ~ 14329490 (+) True LOC110536553
XR_005034574.1 mRNA upstream 51063 14318742 ~ 14321570 (+) True LOC118936448
XM_036934951.1 mRNA downstream 11104 14406010 ~ 14421353 (+) False si:ch211-217a12.1
XM_036934952.1 mRNA downstream 11107 14406013 ~ 14421353 (+) False si:ch211-217a12.1
XM_036934949.1 mRNA downstream 13461 14408367 ~ 14421353 (+) False si:ch211-217a12.1
XM_036934950.1 mRNA downstream 13461 14408367 ~ 14421353 (+) True si:ch211-217a12.1
XM_021620237.2 mRNA downstream 30559 14425465 ~ 14433808 (+) False emc9
TU1079402 other upstream 43297 14318665 ~ 14329336 (+) True G946642
TU1079403 other upstream 54010 14318008 ~ 14318623 (+) True G946643
TU1079404 other upstream 58315 14310575 ~ 14314318 (+) True G946644
TU1079302 other upstream 169634 14171542 ~ 14202999 (+) True LOC110535304
TU1079304 other upstream 201756 14155354 ~ 14170877 (+) False LOC110535304
TU1079453 other downstream 4956 14399862 ~ 14400273 (+) True G946690
TU1079455 other downstream 6348 14401254 ~ 14401644 (+) True G946692
TU1079817 other downstream 187637 14582543 ~ 14584049 (+) True G946999
TU1079869 other downstream 270820 14665726 ~ 14669756 (+) False LOC110535322
TU1080168 other downstream 491708 14886614 ~ 14887282 (+) True G947301

Expression Profile