RNA id: XM_036934952.1


Basic Information

Item Value
RNA id XM_036934952.1
length 3913
RNA type mRNA
GC content 0.51
exon number 12
gene id si:ch211-217a12.1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14406010 ~ 14421353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCACAGGCTAAGTCCAGGTCTGTCCTATATCCTGGTTGTTAGGGTAAGGTGGAGACAAAACAACcaaagacagactgactgactgaccgggATATACAGAGAGAACCCTTGTGCTTTTACTGACCACTGATTGACCATTGGCTAGTGGCTACTCTCTTCACAGAGAGGATACAGTTCTCTGAATATTTCGTGGGCTATCAGCGGAACAGAGTGTGAGCTCcagaaaccaaacatgactgaaAATGGACTTGGGAACCGGGTGCTTAACATGGACACCATGAACCCGAATGTAAAGCGGGTTGAGTATGCTGTCCGTGGTCCAATCGTGCAACGCGCATTGCAGATTGAAAAGGAGCTCAAAGAGGGGGTTGAGAAGCCTTTTACAGAGGTCATCAAGGCCAACATTGGTGATGCGCATGCTATGGGCCAGAAACCAATCACATTTCTCCGACAGGTTGTAGCGCTCTGCGTCTATCCAGATCTCCTAGAAGACGACAAGTTTCCAGAGGACGCTAAAAGTAGAGCACGGCGCATCCTTCAGGCCTGTGGAGGGGGAAGTATAGGTGCATACAGTGCTAGTCCAGGCATTGAGATCATACGACAGGATGTGGCTAAATATATTGAGAAGCGGGACGGTGGCATCCCCAGTGACCCCGACAGCATCTACCTCTCCACCGGGGCCAGTGATGCCATAGTGACCATGCTAAAGTTGTTGACGTCAGGCGAGGGGAAGAACCGTACAGGGGTGATGATCTCCATCCCTCAGTACCCCCTCTACTCTGCTGCTCTGGCTGAGCTGGCGGCTGTCCAGATCAGCTACTACCTGGACGAGGACAAGTGCTGGAGCCTGGACGTCAATGAGCTGAGGAGGGCTGTGAAGGCAGCCAGGGAGCACTGTAACCCCCGCGCCCTCTGCATTATCAACCCTGGCAACCCCACAGGTCAGGTCCAGAGCAGGCAGTGCATTGAAGATGTGATCCGATTCGCTGCTGAGGAGCACCTTTTCCTGATGGCTGATGAGGTGTACCAGGATAATGTGTATGCGGAGGGTTGCCAGTTCCACTCCTTTAAGAAGGTTCTGTTTGAGATGGGACCAGAGTACTCCAGTGTTGTGGAGCTGGTCTCTTTCCACTCCACCTCCAAATGCTTCATGGGAGAGTGTGGTTTCAGAGGAGGGTACATGGAGGTGGTTAACATGGACCCTGAGGTGAAGTTGCAGCTGACTAAACTGGTGTCTGTGCGGCTGTGCCCCCCCATCCCTGGGCAGGCCCTACTGGACCTGGTGGTCAATCCCCCTCAGCCTGACGAGCCTTCCTATGCCACCTTCATCAAGGAGCGTACTGCCAACCTGGATATCCTGGCTGAGAAGGCCAAGATGACAGAGCAGGTCCTCAACACGGTCCCAGGGATCCACTGTAACCCTGTCCAGGGAGCCATGTACACCTTCCCCCGCCTCTCACTGCCAGAGAAAGCCATCAACGCGGCAAAGGAGAAAGGCCAGGCTCCAGACATGTTCTACTGTATGAAGCTGCTGGAGGAGACTGGTATATGCCTGGTTCCAGGTAGTGGCTTCGGGCAGAGAGATGGAACCTACCATTTCAGGATGACCATCTTACCTGCAACTGAAAAGCTGAAGGTTGTATTGGAAAAGATCAGGGAGTTTCATAAGCGGTTTACAGAGGAGTTCTCATAACCCCACTCCTCTTCCCAGTCTGGTCTGTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTGTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTGTAACAAAACCCCACTCCTCTTCCCAGTCCGGTCTGTAACAAAACCCTACTCCTCTTCCCAGTCTGGTTTGTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTGTAACAAAACCCCACCCCTCTTCCCAGTCCGGTCTTTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCCGGTCTGTAACAAAACCCCACTCCTCTTCCCAGTCTGGTCTTTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTGTAACAAAACCACACCCCTCTTCCCAGTCTGGTCTGTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCCGGTCTGTAACAAAACCCCACTCCTCTTCCCAGTCTGGTCTTTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTTTAACAAAACCCCAGTCCCTCTTCCCAGTCCGGTCCTGTCTGTAACAAAACCTCACCCCTCTTCCCAGTCCGGTCTTTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCCGGTCTGTAACAAAACCTCACCCCTCTTCCCAGTCCGGTCTTTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTGTAACAAAACCTCACCCCTCTTCCCAGTCCGGTCTTTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTTTAACAAAACCTCACCCCTCTTCCCAGTCCGGTCTTTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTTTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTTTAATAAAACCCCACTCCTCTTCCCAGTCTGGTCTTAAACAAAACCTCACCCCTCTTCCCAGTCCGGTCCTGTCTGTAACAAAACCTCACCCCTCTTCCCAGTCCGGTCTTTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTTTAACAAAACCCCACTCCTCTTCCCAGTCTGGTCTTTAATAAAACCCCACTCCTCTTCCCAGTCTGGTCTGTAACAAAACCCCAGTCCCTCTTCCCAGTCCGGTCTGTAACAAAACCCCACTCCTCTTCCCAGTCTGGTCTGTAACAAAACCCCAGTCCCTCTTCCCAGTCTGGTCTGTAACAAAACCCCAGTCCCTCTTCCCAGTCTGGTCTGTAACAAAACCCCACTCCTCTTCCCAGTCTGGTCTGTAACAAAaccccacccctcctcccagTCTGGTCTGTAACAAAACCCCACCCCTCTTCCCAGTCCGGTCTGTAACAAAACCCTACTCCTCTTCCCAGTCCGGTCCGGTCTGTAACAAAACCCCACTCCTCTTCCCAGTCCGGTCCGGTCTGTAACAAAACCCCACTCCTCTTCCCAGTCCGGTCTGTAACAAAACCCTACTCCTCTTCCCAGTCCGGTCTGTAACAAAACCCCACCCCTCTTCCCAGTCCGGTCCGGTCTGTAACAAAACCCCACCCCTCTTCCCAGTCTGGTCTTAAACAAAACCCCACCCCTCTTCCCAGTCCGGTCCGGTCTGTAACAAAACCCCACCCCTCTTCCCAGTCCTGTCCAGTCTGTAACAAAACCCCACCCCTCTTCCCAGTCCGGTCTGTAACAAAACCCCACCCTTCCTCCTCAGAAACTGGTTGGAGAGATGGTGGAAATATCTAACTGAAAGAGTGCCAGTGTGTTACCAACACACCCCCTGTTCGAGACTCTCCCCTCTAGTGTCCTAGACTTGACATTAAAAGAGGAGCAATGTGTTAAGAAACTGCACTTTTTAGCATGGTACCTGGCatactgttctgtttcagctaaTTGTTTAAATTGTGTGTCAGACAGCATCTGCACAGTGTACATATGTGATAATGTTTTAGTCATTTTCAGTTCATGACTATAACTGATTGTGTCAGTTGAGGGTTTTACTTGTTTTGCCTATCTAGTTTTACTGGTTATACAGCTACATTATGATCAATCGTACTATTATCAGTAAATAGTTGGCAGAGGTGTGCTTTTATTGCATGCCAGAGGGAGTGCAATGGCTGTTGCGTTGAAAAGGATACTATGAACTACTGTGTGTACAATGAACAGTCTGAATGTAGTTACAGTATTTAATAACCATGTTGATTTTTATCTTGAATtgtaaaaatataaatgaaaGTGTAATTTCTATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079457 lncRNA upstream 2844 14402940 ~ 14403169 (+) True G946694
TU1079454 lncRNA upstream 4991 14400804 ~ 14401022 (+) True G946691
TU1079409 lncRNA upstream 69391 14334335 ~ 14336622 (+) True G946649
TU1079406 lncRNA upstream 96228 14307701 ~ 14309785 (+) True G946646
TU1079424 lncRNA upstream 104093 14301667 ~ 14301920 (+) True G946664
TU1079441 lncRNA downstream 21401 14442754 ~ 14444395 (+) True G946678
TU1079470 lncRNA downstream 38653 14460006 ~ 14460219 (+) True G946706
TU1079476 lncRNA downstream 45925 14467278 ~ 14467614 (+) True G946712
TU1079468 lncRNA downstream 90998 14512351 ~ 14512454 (+) True cpa6
TU1079758 lncRNA downstream 92268 14513621 ~ 14513827 (+) True G946951
XM_036934945.1 mRNA upstream 11107 14372633 ~ 14394906 (+) False LOC110535311
XM_036934946.1 mRNA upstream 11107 14372633 ~ 14394906 (+) False LOC110535311
XM_036934947.1 mRNA upstream 11107 14372633 ~ 14394906 (+) True LOC110535311
XM_036934935.1 mRNA upstream 44520 14340138 ~ 14361493 (+) False oplah
XM_021620237.2 mRNA downstream 4112 14425465 ~ 14433808 (+) False emc9
XM_021620239.2 mRNA downstream 4427 14425780 ~ 14433808 (+) True emc9
XM_036934956.1 mRNA downstream 47637 14468990 ~ 14513210 (+) False cpa6
XM_036934955.1 mRNA downstream 47638 14468991 ~ 14513207 (+) False cpa6
XM_036934957.1 mRNA downstream 94583 14515936 ~ 14612575 (+) False LOC110535318
TU1079455 other upstream 4369 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 5740 14399862 ~ 14400273 (+) True G946690
TU1079402 other upstream 76677 14318665 ~ 14329336 (+) True G946642
TU1079403 other upstream 87390 14318008 ~ 14318623 (+) True G946643
TU1079404 other upstream 91695 14310575 ~ 14314318 (+) True G946644
TU1079817 other downstream 161190 14582543 ~ 14584049 (+) True G946999
TU1079869 other downstream 244373 14665726 ~ 14669756 (+) False LOC110535322
TU1080168 other downstream 465261 14886614 ~ 14887282 (+) True G947301
TU1080689 other downstream 863826 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 1016328 15437681 ~ 15439862 (+) False LOC110535338

Expression Profile