RNA id: XM_036934958.1


Basic Information

Item Value
RNA id XM_036934958.1
length 7539
RNA type mRNA
GC content 0.51
exon number 39
gene id LOC110535318
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14515936 ~ 14612575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtatttccGCTCCTTGAACCGCTGCCTGGATCATCCTGCTGCCTCACTGCGGCCAGTTTTAAAGTGCGTGACGTCGCTTCCTTTCAACATGGCGCAGCTAGGCAGGTTGCTAATGGAAATCTGAGGGATTTACCCCACCTTCTGTCTTTATTTATGTCTGTATGTTAGAGCAACTGCCGCTGTCATCTCGAACAGAATACATCGGTCTGAAACGGCTGCTGCCCTTTGGACAGGCTCCTCGCCCTAATTCCGGTGCGTCATGTATGAGGGCAAAAAGacgaaaaacatgtttttaacaaGAGCTTTGGAGAAGATCCTGGCCGACAAGGAGGTTAAAAAGTCTCATCATTCACAATTGCGCAAAGCTTGCGAGGTGGCACTTGaGGAAATAAAGGAAGAGTCTGAAAAATTAAGtcctcctccAGACAGCAAATCGGATTCCAGCACTCTTCCGCCAATCAAATCAAAGACCAGCTTCGTAGAGGCCGACAAGTACTTCCTGCCGTTTGAGTTGGCATGTCAGTCCAAATGTCCCCGCATCGTCATCACATCACTAGACTGTTTACAGAAGCTGATAGCGTACGGCCACCTGACCGGCAGCGCTCCAGACAGCACGGCCCCTGGCAAGAAGCTCATCGACAGGATCATCGAGACCATCTGCGGCTGCTTCCAGGGACCACAGACAGATGAGGGGGTGCAGCTACAGATCATTAAGgccCTGTTGACGGCTGTGACCTCCCAGCACATAGAGATCCATGAGGGCACAGTGCTGCAGGCGGTCAGGACCTGCTACAACATCTACCTAGCCAGCAAGAACCTCATCAACCAGACCACGGCCAAGGCCACGCTCACTCAGATGCTCAATGTCATCTTCGCCCGCATGGAGAACCAGGCACTTACAAATCACAAGATATCTTGGTCTCTGGCCTCGAGAAAACGTGACCGCCAGCTCCAGGAGGCCAAgcagatggaaagggagaggccCCGGCAGCACACCCAAGTCACCCAGGAACAGGAACCGGACTCACCCCAGCTCCAGCAGCACGTCTACCTCCCAGCCAAGGGCCCTCCCCGGGAGGCCAACGGCCCCACCACCCCCTCTACACCCACACCCACTTCCACCCCCACCACTCCTACCCCAACCCAGGGGGCCacggaggaggagcagggggaacaTGGGATGGTGTATGAGAGGCCAGACCCAGAGAACGGCTCTGAGTTCAGCACAGCAGAGAACCATCAGACAGAGGCGGCAGCAGCACAGTGTGCTGCTCAGCGTGACCAAGAGACagcagtagaggaggaggagcctAACTATGAGGAGAAAGCCCAGGAGATCGTCCAGAGCATCCTACAGGAAGTCGTCAACACCATCGTTGGAGGGTACTGCCTGAACCCTGCTCATCTGTGTTCAGATGCCAAGGAGCCTGCTAGCGAGACCAAGCAGCCCACAGAGATTATGGAACCCGCTGAGGTCATCACCAAGGTAACAGAGGTCACAGAGGTGGCGGAAGACGAGGGGGCGCTGGGCAGCGACAGCGAGAATGTCCATGCCAACGGAATCCCCGGCACGCCCATCTCTGCCAGCTTCACTCCGTCGCTGCCCGACGAcaggctgtctgtctgctccAATGATACACAGGAGTCGGGGGCGACCACAGGCCCAGTACCAGGTGCTAAGTTCTCCCATATTCTCCAGAAGGATGCCTTCCTAGTGTTTAGATCGCTCTGCAAGCTGTCTATGAAGCCTCTGTCAGATGGACCGCCAGACCCAAAGTCCCACGAGCTGCGCTCCAAGGTGCTGTCCCTCCAGCTGCTGCTGTCCATCCTGCAGAACGCTGGGCCCGTCTTCAAGACCAACGAGATGTTCATCAACGCCATCAAGCAGTACCTGTGTGTGGCGCTGTCTAAGAACGGTGTCTCCTCCATCCCAGAGGtcttctcgctctcgctttccatcttcctcaccctcctctcccacttcAAGACCCACCTCAAGATGCAGATTGAGGTGTTCTTCAAGGAGATTTTCCTGTACATTCTGGAGACGTCCACAAGCTCCTACGACCATAAATGGATGGTCATACAGACCCTCACCAGAAtatgtgcagATGCCCAGGGTGTGGTGGATATCTATGTGAATTATGATTGTGACTTGAATGCTGCTAATATCTTTGAGAGGCTGGTGAATGACCTCTCGAAGATCGCACAGGGCCGGGCAGGCCACGAGCTTGGCACAACACCACTCCAAGAGTTGACCCTGAGGAAGAAAGGCCTGGAGTGTCTGGTGTCCATCTTGAAGTGTATGGTAGAGTGGAGTAAAGACCAGTATGTCAACCCCAACTCCCAGACCAGCCTTGGTCAGGAGAAGCCCTCGGAGCAGGAGACCAATGAGACGAAGGCCCCAGAGACCATCAACCGCTACGGAAGCATCAACTCCCTGGACTCCACAGCCTCGTCGGGCATCGGGAGCTACAGTACACAGATGTCAGGGACAGACAACCCAGAGCAGTTTGAGGTTCTCAAACAACAGAAGGAGATCATTGAGCAGGGCATCGACCTGTTCAACAAGAAACCAAAGAGGGGTGTCCAGTACCTCCAGGAGCAAGGTATGCTGGGAACCACCCCGGAGGACCTCGCTCAGTTCCTGCACCAGGAGGAGAGGCTGGACTCGACTCAGGTGGGTGAGTTCCTGGGGGACAATGATCGCTTCAATAAAGAGGTCATGTATGCCTACGTGGACCAGATGGACTTCCAGGGCAAGGACTTTGTCTACGCTCTCAGAACGTTCCTCGAGGGCTTCCGTCTCCCGGGAGAGGCTCAGAAGATCGACAGGCTCATGGAGAAATTTGCTGCGAGATACCTAGAATGCAACCAGGGgcAAACTGAGTTTGCGAGTGCAGACACTGCGTACGTCCTTGCCTACTCAATCATTATGTTGACAACAGACCTTCATAGTCCGCAGGTGAAGAACAAGATGACTAAAGAGCAATACATCAAGATGAACAGAGGGATCAACGACAGCAAGGATCTACCGGAGGAATATCTGTCTGCCATCTACGACGAGATCGCAGGGAAGAAGATCGCTATGAAGGAGACCAAGGAAATTACTCTGAAATCCAACAAGCACAGTGTGGCCAGTGAGAAGCAGAGGCGGCTGCTGTATAATGTAGAGATGGAGCAGATGGCTAAGACAGCCAAGGCCCTAATGGAGGCTGTCAGTCACGTCCAGGCTCCCTTCACCAGCGCCACACACCTGGAGCATGTCAGACCCATGTTCAAGCTGGCCTGGACCCCGTTCCTAGCAGCCTTCAGTGTGGGCCTCCAGGACTGTGACGACACTGAGGTGGCTTTTCTCTGTCTGGAGGGAATACGCTTTGCCATCCGGATAGCCTGCATCTTCACCATACAGctggAGCGGGATGCGTACATCCAGGCCCTGGCACGGTTCACCCTGCTCACAGCCAGCTCTGGCATCACTGAGATGAAGCAGAAGAACATCGACACCATCAAGACTCTCATCACCGTCGCCCACACAGACGGAAACTACCTGGGCACCTCCTGGCACGAGATAATGAAGTGTATCAGTCAGTTGGAGCTGGCCCAGCTGATCGGGACAGGGGTTAAGGCCAGGTACATCTCAGGGACGGTTCGGGGGAAAGAGGGCTTCATCACCAGCACCAAGGAGCAGAGCAACGACGAATACCTGGGCCTGGGTGGGACAGTAGACCGGAAGCAGATCCTCAGTATCCAGGAGTCCATAGGAGAGACCAGCTCCCAGAGTGTGGTGGTGGCTGTAGACAGAATATTTACAGGTTCTACCAGACTGGATGGTAATGCAATTGTGGACTTTGTGCGCTGGTTGTGTGCTGTGTCTATGGATGAGCTGGCCTCGCCCACACACCCCCGCATGTTCAGCCTGCAGAAGATAGTGGAGATCTCCTACTACAACATGGGACGTATCAGACTGCAGTGGTCCAGGATCTGGGAGGTCATTGGAGACCACTTCAACAAGGTTGGATGTAACCCCAACGAGGACGTGGCTATCTTTGCTGTGGATTCTCTCCGGCAGCTGTCCATGAAGTTTCTAGAGAAGGGAGAGCTGGCAAACTTCAGATTCCAGAAGGACTTTCTGAGGCCTTTTGAGCACATCATGAAAAAGAACAGaTCTCCAACGATCAGGGACATGGTGGTGCGCTGCATAGCCCAGATGGTCAACTCACAGGCGGGGAACATCCGGTCGGGCTGGAAGAACATCTTCTCAGTGTTCCACCTGGCTGCCTCGGACCAGGACGAGAGCATCGTAGAGCTAGCATTCCAGACCACGGGGCACATCTCCACGAATGTATTTGAGAAGCACTTCCCAGCCACCATAGACTCCTTCCAGGATGCAGTCAAGTGTCTGTCTGAGTTCGCCTGCAACGCCTCCTTCCCGGACACCAGCATGGAGGCCATCCGCCTCATCCGACACTGCGCCAAATACGTCTCTGACAGGCCCCAGGCGTTCAAAGACTACACCAGTGATGATATGAATGTAGTCCCAGAGGACCGGGTTTGGGTGAGAGGGTGGTTCCCCATCCTCTTTGAGCTGTCCTGCATCATCAACAGGTGTAAACTGGACGTCAGGACCAGgggtcTGACGGTGATGTTTGAGGTGATGAAGACCTATGGACACACCTTTGAGAAACACTGGTGGCAGGATCTGTTCAGGATCGTCTTCAGGATCTTTGACAACATGAAACTGCCTGAGCAGCAAACTGAGAAAGCAGAGTGGATGACGACGACCTGTAACCACGCACTTTACGCCATCTCTGACGTGTTCACGCAGTACTTTGAGTCTCTCAGTGATGTCCTGCTGGATGACATTCTGGCACAGCTGTACTGGTGTGTTCAGCAAgATAATGAGCAGTTGGCCCGGTCAGGCACCAACTGTCTGGAGAACGTGGTCATCCTGAATGGAGAGAAGTTTACTCCGGAGACCTGGGACAAGACCTGTAACTGCATGCTGGACATCTTCAAGACCACCATCCCACACGCGCTGTTGACATGGAGACCAGCAGGAGCAGAGGGAGATCCCATGACACCACAGGACATATCAGACAGACAGCTGGACTCAATTTCCCAGAAGTCCGTGGACATCCAGTCCCATTCCGAGGACCAGCATTCCATCAACAGCGCAGAGAGGGTTGCCATGGAGACCCGGCGGCAGAGTCAGTACAGCACAGGCATTTATGAGGACGGCCCCAGAAACAGGACCCCAATAAaGATCCAGGAGCAGAGGTTATTCTCAGCCTTGCTCATTAAGTGTGTGGTGCAGTTGGAGCTGATCCAGACCATAGACAACATGGTCTTCTTCCCTGCGACCAGCAGGAAGGAGGATGCTGAGAACCTGGCTGCTGCACAGAGAGATTCTCTGGACGCAGCAGACGTACTTGTGGAGACCCAGGACCAGGGAATGTACCACTATCTGACCTCAGAACAGCTGTTCAAGTTGCTGGACTGTCTGCTGGAGTCCCACCACTTCGCCAAAGCCTTCAACGCCAACAACGAGCAGAGGACCACTCTCTGGAAGGCAGgTTTTAAAGGGAAGTCAAAGCCCAATCTGCTGAAGCAGGAGACCAGCAGTCTGGCGTGTGGCCTGAGGATCCTGTTCCGGATGTACACTGATGACAGCCGTCAGACTGCCTGGGAAGAGGTCCAGAGACAGCTGCTCAATGTGTGCAGTGAGGCAGTAGCCTACTTCCTGACTCTAACATCAGAGAGCCACAGAGAAGCCTGGACAaacctactcctcctcttcctcaccaagGTCCTGAAGATCAGTGATGACAGGTTCAAGGCCCATGCGTCCAGGTACTACCCTCTGCTGTGTGAGATCATGCAGATTGATCTTATCCCAGAACTGCGGTCCGTGCTGCGGAAGTTCTACCTACGCATCGGGATCGTGTTCCAGATCGCCCAGCTACCTGACACCTCCCAGCCGGAACAAGAACCAATGCCAGAACCAGGACTGGAagttgaggtggagagaggggaggtggctggagaggaagcccagtgatGTTCCACTTGTAGCGGGCTGGCACCGAGACCTCTGGATAGGGAAGCCTGGAACTTGGAAGTCCTCCTCCCCTCTTGCCTTGGGTTTGTCCACAAACCCTTTAGGACTATGGTCTCCCATCCCCCAGGGTACTACAAGGGGTGCATCTGACCAGACTTCACCCCCTCTGGATTTGGCAGTTACCCAGAATCCCCCAGTACAGGAAACTGCCAGGGATCTCTACTGTGAACCTGACTGGTCATGTGACAGGAAATGCCCCCTCATTTCAGAGTAGGTTGAAGTTGCCCCTAGAAACTGATCGAAGGCCAGTTTTTGCATCCccttatggttaaggttagaatatTGGGAGGTCAAGCTGATCTTAGATCCTATGAGCAACTTCTACCTGAAGCCCCTCATATCACTGGAAGAATGGCTTGGCATTGTGTGAAGATCTGATTCTCCAATTCTACTGACGACTGCAGAATAACTATGATTATACAATTGGCCTACCCACCTTTCTGACTCCGAAGAGTCAAATATATTTCAAAAAGGTACTGCTTCTTGACATGACTGTGTCCTTACAAGCTACTCTTGAGAATGAAATGGATACACATACATCATGCAATGCAAATGACGATTATTCAGTAATGTGAAATGTGACATTCTTACTCAATAATAATTCAGATATTTTCCAGGCTGCACCATTGATGGCTAACGTTAAAAACCAATAGCACTGTGGATTAAAAATTAACTACAGAAATGGCGCTTTGTAATGTAATCTCATAACACTGGATTTTATTTCCTTTTTTTCTGTATTCTGCTGCACTTGATCTCTTTATTGAAGATTTTTGCTTTTGTGATTATTTATTTTGACTGAACCATCTGTCCTGCAGTTTGTAATTGAATGACGACACGGCAGAAAGTTATAGGTAAATTATTCCATTTGATATGTTCTGAGACTTTAACTGATAGTCTATAACTGGGACTCCTCCTAAAACTGGAAAAAAAGGAGAGCAACTACAGGCCCGTTCAGGAGGTTCCAACGTTCAAGATAGAAATGTAGTGTGTAGATATGATTGTCATATACTACAAGGAATTATCAGCTCTATATAcaacatttctatctgcaatgctTCTGAATAGGCCCCTGGTGTGAGCTGCTTCTGAATCACTGGTCTGTTTCCATGTTTCAAGTTAGTTTCCACTCTGTGTACAAATTTGAATAAAttcataatatatttaatatCCTTTTTCTTTTGTTTGGGGACATGCTGTATGTATAGAGTAAATGACGAATAATGTTAACTGTGGTTTAAAAGAAGACTTGTGAATGGGACGCATTCCTTGCTCACGGatgtagaaaacaaaatgtatatgGTACAGCAATGTAAAGTTTTCTATGTTGAAAAAAGACTTCTGTACAACTTTCTGTACAAAACTGGTCATCATCCGACATTTTAATCAGGTTATAGGTCAATAAAGTTTTTGAACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079758 lncRNA upstream 2109 14513621 ~ 14513827 (+) True G946951
TU1079468 lncRNA upstream 3482 14512351 ~ 14512454 (+) True cpa6
TU1079476 lncRNA upstream 48322 14467278 ~ 14467614 (+) True G946712
TU1079470 lncRNA upstream 55717 14460006 ~ 14460219 (+) True G946706
TU1079441 lncRNA upstream 71541 14442754 ~ 14444395 (+) True G946678
TU1079767 lncRNA downstream 893 14613468 ~ 14615178 (+) True G946955
TU1079859 lncRNA downstream 53151 14665726 ~ 14669246 (+) False LOC110535322
TU1079861 lncRNA downstream 53151 14665726 ~ 14669246 (+) False LOC110535322
TU1079866 lncRNA downstream 53151 14665726 ~ 14671958 (+) False LOC110535322
TU1079868 lncRNA downstream 53151 14665726 ~ 14669246 (+) False LOC110535322
XM_036934956.1 mRNA upstream 2726 14468990 ~ 14513210 (+) False cpa6
XM_036934955.1 mRNA upstream 2729 14468991 ~ 14513207 (+) False cpa6
XM_021620237.2 mRNA upstream 82128 14425465 ~ 14433808 (+) False emc9
XM_021620239.2 mRNA upstream 82128 14425780 ~ 14433808 (+) True emc9
XM_036934949.1 mRNA upstream 94583 14408367 ~ 14421353 (+) False si:ch211-217a12.1
NM_001165048.1 mRNA downstream 25684 14638259 ~ 14642624 (+) True csn5
XM_036934964.1 mRNA downstream 33067 14645642 ~ 14659439 (+) False ppp1r42
XM_036934965.1 mRNA downstream 33067 14645642 ~ 14659439 (+) False ppp1r42
XM_036934966.1 mRNA downstream 33067 14645642 ~ 14659439 (+) True ppp1r42
XM_021620247.2 mRNA downstream 47710 14660285 ~ 14663560 (+) False LOC110535321
TU1079455 other upstream 114292 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 115663 14399862 ~ 14400273 (+) True G946690
TU1079402 other upstream 186600 14318665 ~ 14329336 (+) True G946642
TU1079403 other upstream 197313 14318008 ~ 14318623 (+) True G946643
TU1079404 other upstream 201618 14310575 ~ 14314318 (+) True G946644
TU1079869 other downstream 53151 14665726 ~ 14669756 (+) False LOC110535322
TU1080168 other downstream 274039 14886614 ~ 14887282 (+) True G947301
TU1080689 other downstream 672604 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 825106 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 825106 15437681 ~ 15439862 (+) True LOC110535338

Expression Profile