Gene
RNA
| Item | Value |
|---|---|
| RNA id | NM_001165048.1 |
| length | 1342 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 8 |
| gene id | csn5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 14638259 ~ 14642624 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0008180 | COP9 signalosome | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0008237 | metallopeptidase activity | molecular_function |
| id | description |
|---|---|
| K09613 | COPS5, CSN5; COP9 signalosome complex subunit 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1079767 | lncRNA | upstream | 23081 | 14613468 ~ 14615178 (+) | True | G946955 |
| TU1079769 | lncRNA | upstream | 43231 | 14567193 ~ 14595028 (+) | True | G946957 |
| TU1079815 | lncRNA | upstream | 56686 | 14580554 ~ 14581573 (+) | True | G946998 |
| TU1079758 | lncRNA | upstream | 124432 | 14513621 ~ 14513827 (+) | True | G946951 |
| TU1079468 | lncRNA | upstream | 125805 | 14512351 ~ 14512454 (+) | True | cpa6 |
| TU1079859 | lncRNA | downstream | 23102 | 14665726 ~ 14669246 (+) | False | LOC110535322 |
| TU1079861 | lncRNA | downstream | 23102 | 14665726 ~ 14669246 (+) | False | LOC110535322 |
| TU1079866 | lncRNA | downstream | 23102 | 14665726 ~ 14671958 (+) | False | LOC110535322 |
| TU1079868 | lncRNA | downstream | 23102 | 14665726 ~ 14669246 (+) | False | LOC110535322 |
| TU1079885 | lncRNA | downstream | 53489 | 14696113 ~ 14696330 (+) | True | G947048 |
| XM_036934957.1 | mRNA | upstream | 25684 | 14515936 ~ 14612575 (+) | False | LOC110535318 |
| XM_036934958.1 | mRNA | upstream | 25684 | 14515936 ~ 14612575 (+) | False | LOC110535318 |
| XM_036934959.1 | mRNA | upstream | 25684 | 14515936 ~ 14612575 (+) | False | LOC110535318 |
| XM_036934960.1 | mRNA | upstream | 25684 | 14515936 ~ 14612575 (+) | True | LOC110535318 |
| XM_036934956.1 | mRNA | upstream | 125049 | 14468990 ~ 14513210 (+) | False | cpa6 |
| XM_036934964.1 | mRNA | downstream | 3018 | 14645642 ~ 14659439 (+) | False | ppp1r42 |
| XM_036934965.1 | mRNA | downstream | 3018 | 14645642 ~ 14659439 (+) | False | ppp1r42 |
| XM_036934966.1 | mRNA | downstream | 3018 | 14645642 ~ 14659439 (+) | True | ppp1r42 |
| XM_021620247.2 | mRNA | downstream | 17661 | 14660285 ~ 14663560 (+) | False | LOC110535321 |
| XM_021620246.2 | mRNA | downstream | 17664 | 14660288 ~ 14663560 (+) | True | LOC110535321 |
| TU1079817 | other | upstream | 54210 | 14582543 ~ 14584049 (+) | True | G946999 |
| TU1079455 | other | upstream | 236615 | 14401254 ~ 14401644 (+) | True | G946692 |
| TU1079453 | other | upstream | 237986 | 14399862 ~ 14400273 (+) | True | G946690 |
| TU1079402 | other | upstream | 308923 | 14318665 ~ 14329336 (+) | True | G946642 |
| TU1079403 | other | upstream | 319636 | 14318008 ~ 14318623 (+) | True | G946643 |
| TU1079869 | other | downstream | 23102 | 14665726 ~ 14669756 (+) | False | LOC110535322 |
| TU1080168 | other | downstream | 243990 | 14886614 ~ 14887282 (+) | True | G947301 |
| TU1080689 | other | downstream | 642555 | 15285179 ~ 15299373 (+) | True | spata13 |
| TU1080897 | other | downstream | 795057 | 15437681 ~ 15439862 (+) | False | LOC110535338 |
| TU1080898 | other | downstream | 795057 | 15437681 ~ 15439862 (+) | True | LOC110535338 |
