RNA id: XM_036934965.1


Basic Information

Item Value
RNA id XM_036934965.1
length 2491
RNA type mRNA
GC content 0.45
exon number 9
gene id ppp1r42
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14645642 ~ 14659439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCCAACAAGGATATCCACACACGAGTGTAAACTTTCACCTCATCTCACCCCACATCTTTAGCATTAGTCTCTTTTATCGCCAAATTACAAGGACATGTGCATATACTACAGTGATGTTTCTGGTGGTTGTTCTGTGAGCGCTTTGCTGAAGCTGAGAAGGATCCACTCTGAAGCAGTGTCTGTAACGAGCCATCATGGTCCGCCTCACCATGGATCTGATTGCCAAATCCAGCAACCATTTCAAAAACAAGAGAAGCTACTCCCTCCCAAAGTACCTCAAGAAACTCACTCATCTGAACTTCTCCAACAGGAACATAGAGGACATTGACGATCTCTCCATGTGCAGAAATCTCACAGTCCTCTACCTGTACGACAATCAGATCAGCCAGATCTGCAACCTGGGTTTTGCCTCCAACCTCACTCACCTATACATGCAGAACAACAACATCACTCACATAGATAACCTCTCCGGCCTGCAGAAGCTCTCCAAACTGTACCTGGGGGGAAACAGCATCACGGTGGTGGAGGGGTTAGAGGAGCTGGGGGAGCTGAAGGAGCTCCACATGGAGGGCCAGAGACTCCCCAGTGGAGAGAAGCTGCTCTTTGACCCCAggactctcctctccctcgctGAATCTCTAGGTGTCTTGAATATCAATAAGAACAACATAGATGATGTCAGAGATCTTGCCGTTCTAAAGAAACTCACACATTTCTTTGCTGCAGACAACCAGCTACAGGACATGCAGGATATAGAGTTGGTGTTCAGCCAATGGCCTCAGCTGCATCGAATGGATTTGAGTGGAAATCCTGTGTGCCACAAACCCAAGTACAGAGACAGGCTGATAACTGTGTGCAGAAGCCTGAACGAACTTGATGGGAAGGAAATTAATGAGTTGTCCAGGCAGTTCCTGATTAACTGGAAAGCGTCGAAAGACGCCAAGAAAAAACTGAAAGATGAAAGAATCATGACAGGCCAGATCACCTATCCCTTTACTGCAGACTTCCACATGGGCCCCCATCCTTCATCCAAATATAACTATGCCAACGTCCTGGGAAAGAGGAATCCTCCGGGGTGTGGGAGACCCAGCAGGAAGGTCCGCTCAGAACACTCACAACTGGACAGCGCAGCAATGAGgCCACGGAACGTGAAGATCCCAGTGAGTGCGGGGCTGCTTAGTGATGTGGCCGACAATGCTAATGTCTGCGGCCTGTAAGACGGACATGCCAGCTCTGCTAACACACATTCACTCTGGTGACCCTCTCACATACAGTCTGGTgaccctctaacacacacacacataatatacacTCTGGTgaccctctaacacacacacacacataatatacacTCTGGTGACCCTCTCACATACACTCTGGTgaccctctaacacacacacacacacataatatacacTCTGGTgaccctctaacacacacacacacacataatatacacTCTGGTGACCCTCTCACATACACTCTGGtgaccctctcacacacacacacacacacataatatacacTCTGGTGACCCTCTCACGCCTAAACTTTACCTTACACATAACACATagccagtgcttgacttgggcaggagctcactagAGCTGAGTACCAGCACCTAAAATGTTCTACTGATTGAGCTCCTGCatctcttatagaatattaactAGAAACTATTGTGGAACTTCTGCAACTAAATATAAACAGTTCCCGGGACCCAAAATGATTACCGGCACCTATtccagtccaagtcaagcactgcacaTAACCTCCCACTGCTATCACCACACATCAGGGGTGGACCTGACCCCTGACACACTCAATACGAAAGAGTCTACACTATGGTCTGTCACTGTCAGGGACTGATGGACTGCAGTAGAGGCACtttatggtcataatatatgtacTACCTTTGAAGTCTTCTTCaaatattatgacagaacaaTAGCTGCCCTATAAAAACAGTGTCTGATATTATATCTATGTTTTTTTGgcctttgcctgtttgatgtttGTTTTGTGTACCTGAGTGGACTTGATAAGAATTTTACAATACCTGGATTTTAGAGTGTAAGATCTGATGTGTTTATTTATGAAATGACTGAATGCCGTTTGGTGTTTGGGTGTGTCCATGCTGGGAAGTACAACTCACTTCATACAAATGGCTTTGTTGGATTTTTACAAATACCATTTTCACCAATTTGGAAGTTATATCCCAGAACTCTATGTCAAATAAGTCCACACCGCAAATCCAATCTGAATGTGTGTTTTATACAAATTAAATAACTTTAAAAAAGAATCATTTGAGTATAACCACTATCTGTGTCCTTGATGGTGTAGTTTGTCTTTTTCCCCCTGCTGTATTAATGACATGTTTTGGGGGACACCGACCGTGCATAATGATGTCAGATATGCACTTAATTGCCCAGCATTGTCATAAATTATTATTGTAGAATAAATGGTGAAGGTTTTAATTGGAACAGGAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079767 lncRNA upstream 30464 14613468 ~ 14615178 (+) True G946955
TU1079769 lncRNA upstream 50614 14567193 ~ 14595028 (+) True G946957
TU1079815 lncRNA upstream 64069 14580554 ~ 14581573 (+) True G946998
TU1079758 lncRNA upstream 131815 14513621 ~ 14513827 (+) True G946951
TU1079468 lncRNA upstream 133188 14512351 ~ 14512454 (+) True cpa6
TU1079859 lncRNA downstream 6287 14665726 ~ 14669246 (+) False LOC110535322
TU1079861 lncRNA downstream 6287 14665726 ~ 14669246 (+) False LOC110535322
TU1079866 lncRNA downstream 6287 14665726 ~ 14671958 (+) False LOC110535322
TU1079868 lncRNA downstream 6287 14665726 ~ 14669246 (+) False LOC110535322
TU1079885 lncRNA downstream 36674 14696113 ~ 14696330 (+) True G947048
NM_001165048.1 mRNA upstream 3018 14638259 ~ 14642624 (+) True csn5
XM_036934957.1 mRNA upstream 33067 14515936 ~ 14612575 (+) False LOC110535318
XM_021620247.2 mRNA downstream 846 14660285 ~ 14663560 (+) False LOC110535321
XM_021620246.2 mRNA downstream 849 14660288 ~ 14663560 (+) True LOC110535321
XM_036934968.1 mRNA downstream 6228 14665667 ~ 14715423 (+) False LOC110535322
XM_036934971.1 mRNA downstream 6228 14665667 ~ 14715423 (+) False LOC110535322
XM_036934972.1 mRNA downstream 6228 14665667 ~ 14715423 (+) False LOC110535322
TU1079817 other upstream 61593 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 243998 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 245369 14399862 ~ 14400273 (+) True G946690
TU1079402 other upstream 316306 14318665 ~ 14329336 (+) True G946642
TU1079403 other upstream 327019 14318008 ~ 14318623 (+) True G946643
TU1079869 other downstream 6287 14665726 ~ 14669756 (+) False LOC110535322
TU1080168 other downstream 227175 14886614 ~ 14887282 (+) True G947301
TU1080689 other downstream 625740 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 778242 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 778242 15437681 ~ 15439862 (+) True LOC110535338

Expression Profile