RNA id: XM_021620246.2


Basic Information

Item Value
RNA id XM_021620246.2
length 1826
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110535321
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14660285 ~ 14663560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGGGAGAAGTACCGTCCCCCAAAATTTGTTTGCTAGAAGAAAAACGTCTCCGGCGTTGAAAAGaggtctctccactctccccttcGACAGAAACATGTTGCGAAAGGGAAAAGAGCAGTAAGTCTCTCCCACTGGCAGGGAGTCTTAAGGGCTTGTGATTAATTACTCTGGAGTGAAAAAGTTGTCAGCTCTTTGTGTATGCAATAAATTAGAGGCTCCTCAGGTGAGCGCTACGTACGTGGACATCCCCACTGCGCATCTTCTTCCACGACCGCGCCTCTTTATAAAGATTATCCGGACTTGGAGCGGCACGACAACTTTTCTCCATCTCGTATTGGAGCAGCAGTGGAGTCTGTGGTGCACTATAGATTCTCTTCGCATTGCCTTGATGTCGTTACTCAAGACAAAGCTGTTGGGTACATTTGAAGGTTAATAAGTGCTCCCTATGGTTGGAAGACAGACGATCCGTATGGATAGTGGAAATGGCCCAGTGACAGTTATGGATGAGAGTCCCACAtctagccccagccccagtcctgACATGCTGACCACCGACAGTCGGCGTCCAGAGGCCCTGCAGCTCTCCAGGGTGGTCCAGGCCGGTGGGCTCTGTGGCAGAGGACGGCCGGCAGCAACCAACGCAGCGCGGGAGAGGAGTCGAGTGCAGACCCTGAGAAGCGCGTTCCTGGAGTTACAGAGGACTCTGCCGTCGGTGCCACCGGACACCAAACTGTCCAAGCTCGACGTGTTGATTTTGGCCACCACGTACATTGCCCATCTGACTCAGACCTTGcaagaggaagggatggatgagGGAGATAGCACTAGACAAACAGAGGCCTTACGCTCGCTGAAAGGTGATGGTTACCTGCACCCTGTGAAAAAGTGGCCGATGCGATCCAGGTTATACGTCGGAGCCAGCGGTCAGTTTCTGAACAATTCAAAACAGACAGAAAATCGAGGTGAATCATCGTCAACCTCAAGGACATAAATCTTTCCATTGCATAAGGAACTTCTCATTCAGACGACCATTAATTATGAAGACTCTTTCAGCAGAATCCACCCATGAGGACTTTTGAAATGAATAGCAGACCATGGTTCGTCGCCTGACATTATAATTTTTATTCATCAAACAATTGAAGTATCTGCTTTTGACGTTTCATATCATGTAAAGGGAGCAGTCACGAGACAGTCAACTCTTTCAATTGTAGGAAACACATTGTAAATTAATATATTATGGGATGTATGTATATAACATTTGAGAAAGCCTAAATATTGTTTCTCTGTTGTTATTTTGGCCTTGCTCTGCTCTGTTTTCTGCAGTTATGTACTTGTTGGAGGTATTACCGTGTATACTTTTATTTTAAATTCCATGTGTTGGGTAATGATCTTTCGGGCTTGACTTGTTGGCTATGCACTTTCAGTTAAAACATTTGCACTAAATGCATGTGTGAATAACTTAACATCTGTCATGTGAAGTGGTCTGTCAGAATCTCAACAATGGTAGGAGCCTCTTCATCTCCCCTTCTTTCTTACGGGAATGGTTGTTTATGTGTTTGTTGATAATGGCTTGAGAAATAAAAAGAATGACATGTCTCCCACTCCGTAGGTTGTAAATACGTTTACTGAGATGTATTAGTTGTAAGTGAATAAACATGTTATCTCATTGAAGACAagctatatattttaacaatcaaGAGGGATTCCATTTTATTATTTGCCTAAAAAGGAATTATGAGTAAACATTCTTTGGCAATATGACTTTTTTTTTGCATGCATGTGCTGACTCAGATAAATATATTACACtggaaaaaaataaataga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079767 lncRNA upstream 45110 14613468 ~ 14615178 (+) True G946955
TU1079769 lncRNA upstream 65260 14567193 ~ 14595028 (+) True G946957
TU1079815 lncRNA upstream 78715 14580554 ~ 14581573 (+) True G946998
TU1079758 lncRNA upstream 146461 14513621 ~ 14513827 (+) True G946951
TU1079468 lncRNA upstream 147834 14512351 ~ 14512454 (+) True cpa6
TU1079859 lncRNA downstream 2166 14665726 ~ 14669246 (+) False LOC110535322
TU1079861 lncRNA downstream 2166 14665726 ~ 14669246 (+) False LOC110535322
TU1079866 lncRNA downstream 2166 14665726 ~ 14671958 (+) False LOC110535322
TU1079868 lncRNA downstream 2166 14665726 ~ 14669246 (+) False LOC110535322
TU1079885 lncRNA downstream 32553 14696113 ~ 14696330 (+) True G947048
XM_036934964.1 mRNA upstream 849 14645642 ~ 14659439 (+) False ppp1r42
XM_036934965.1 mRNA upstream 849 14645642 ~ 14659439 (+) False ppp1r42
XM_036934966.1 mRNA upstream 849 14645642 ~ 14659439 (+) True ppp1r42
NM_001165048.1 mRNA upstream 17664 14638259 ~ 14642624 (+) True csn5
XM_036934960.1 mRNA upstream 47713 14515936 ~ 14612575 (+) True LOC110535318
XM_036934968.1 mRNA downstream 2107 14665667 ~ 14715423 (+) False LOC110535322
XM_036934971.1 mRNA downstream 2107 14665667 ~ 14715423 (+) False LOC110535322
XM_036934972.1 mRNA downstream 2107 14665667 ~ 14715423 (+) False LOC110535322
XR_002475240.2 mRNA downstream 2108 14665668 ~ 14669119 (+) False LOC110535322
XR_002475239.2 mRNA downstream 2108 14665668 ~ 14669136 (+) False LOC110535322
TU1079817 other upstream 76239 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 258644 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 260015 14399862 ~ 14400273 (+) True G946690
TU1079402 other upstream 330952 14318665 ~ 14329336 (+) True G946642
TU1079403 other upstream 341665 14318008 ~ 14318623 (+) True G946643
TU1079869 other downstream 2166 14665726 ~ 14669756 (+) False LOC110535322
TU1080168 other downstream 223054 14886614 ~ 14887282 (+) True G947301
TU1080689 other downstream 621619 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 774121 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 774121 15437681 ~ 15439862 (+) True LOC110535338

Expression Profile