RNA id: XM_021620251.2


Basic Information

Item Value
RNA id XM_021620251.2
length 5101
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC110535322
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14665667 ~ 14715423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGATTCGGCGGGATGGACAAAAATCAGACTGCGAAAACAACAAAATAGAAGTGCAGTAAACAGTGAGAGGGAGAATAGTGTTTAGGCTACAAGGCGGGTCACAGCTAGATAAATATGTTCACATCCTGTTCGATCGGATTATGACATTACATGCATCGTGGTGACATGCAAAAGATAAGCAGACtcgttttttttatatataagatTGCACACATTTCCTACAGCGAGAACGAGTTTGACATGGAAGTTAAGCGCTAGCCAGCAAACTTAGCACTTTATTTTCACTGTCATAAAATAAACTGGAAGATTATAGACATCGGGTGGTATGGAAAACTGTCCATAGAGATCACCTAATTCGCTTTTTATATGGATTTTAGCCTAACTACAAAtagaggatatttttaaaaagCGTTGATCAGCTGTCAATATGGCCGAAATAAAGTCGCTCAGTGAGTCTGACGATGAAGATCTACACTCCACAGATCCTGAGGGTAAGGACAAGAGCAAAGACAAGAAGATACTGTGCAAAGTCAAATGGTCTTGTGACGAGgatgAGAGGCTGAAGAAGTTAGTGGAGCAGCATGGAACAGACTCCTGGAAATTAGTAGCTAATAATTTCCCAGGGAGGACAGATGGCCAGTGTCAGCACCGCTGGCAGAAGGTGCTCAACCCAGAGCTGGTGAAAGGACCCTGGACAAAAGAGGAGGATCAGAAGgtgatcGACCTGGTGCACAAATATGGCCCCAAGCGCTGGTCGGTGATCGCTAAGCACCTGCAGGGACGCATCGGAAAGCAATGTCGTGAGCGCTGGCACAACCACCTGAACCCTGAAGTAAAGAAGTCCTCCTGGACCCAGGAGGAGGACTGCATCATCTACCAGGCCCACAAACGCCTGGGCAACCGCTGGGCTGAGATCTCCAAGCTGCTGCCTGGAAGGACGGACAATTCCATTAAGAACCACTGGAACTCCACCATGAGGAGGAAGGTAGAGCATGAGGGGTATCTTCAGGAGGGCTGCAGGGGATTTGGCTTTGAccatgggggggtgaagagaagTCACCACAGACCCTGTGTCCCCCAACCAGACACCCCCCACCATGGGCACAGCCCTCTGGGCATGGAAGGACCAACACAGCTCAGGGGTTACCCTTATAGCCCTCACTGTGGCCAACTGATGGACAGCCTCCAAGACTCCTCCAGCTACTTATCGCCGTCCTGCCATGACGACCCAGACAAAGAGCAGAGAATTAAGGAGCTTGAGCTTCTGCTTATGTCAGCAGAGACTGAGGTCCGGAGACAGGCCCAGTACCGAGGCCCATGTAATGTGGAGCGTTACTCCAGCTGGGCAGACAGCGTGTCAGACGACACCATgaccaccagcagcagcagtcTGGAGGATCAGGCTGAGGGAAGCTGGAGGGGGGCAAAGGAGGGCCGGGGCCCCCCGATGGAGCAGGCTGAGGAGGGCTGGAGGGGCCCAGAGGAGGGCCGGGGCCCCCCGATGGAGCAGGCTGAGGAGGGCTGGAGGGGCCCAGAGGAGGGCCGAGGGCTCCAGGTCCAGCACCACGTCTCCCCCAGTAAGTTCCTGTCTGTGGAGGCTAATTCCGTGCTCTCCACCTTGCAGACCATCCCAGAGTTCGCAGAGTCCATGGAGCTCATCGACTCGGACCCTATGACGTGGAGCGAGGCGTCCAGCTTCGACATGTCTGAGGCGACTACCCCCCCGAAACAAACACAAGGGTGCTACGCACCCCAGGGGAGAGCCACAGAGGGGATGAGGTACGCAGTTGACCACCCCAACGGCATCTCCACCAAGCACTGTGCCCCCATGGGTCAGGGGAAGGCCTCCCCCCACACCCCGAACAACATGCCCAGATCGAGTTTGCCTACcctggggaggaggaagaggggggaccAGTCCCCTGATAGGAGTTGCCCATCCTTCTTAGACTCACTCAGCACCAACTCGCCCAAGAACACCCCCACGAAAGCActgcccttctccccctcccagTTCTTCAACACATCAGGAGGAGAGCATCTGAACCTGGACAATCCAGCTCTGACCTCCACCCCGGTCTGTGACCAGAAGTGTCTCCTCAACACACCCTTCCAGAGGGAGACCACGCCCAAACACCAGAAAGAGAATGTGGGTTTCAGGACCCCTAAGATCCGTAAGTCCATCATGGTTCCGACTCCCAGAACTCCTACTCCGTTTAAGAATGCCCTGGCCGCCCAGGAGAAGATGCATGGGCCACTAAAGATGGTGCCCCAGTCCCTGGCCTTCCTGGAGGAAGACCTCAGGGAGGTGCTGAAGCAGGAGATTGGATCAGACATCTTCACCAGGGAACTACAACCACATTTCATGACATGGAAACATGATGTGGATGGGCCAGCCAAGAAAGTGCGTAAGTCCCTGGTGCTGGACTCCTGGGGGAAAGACTGTCTTAACGTCCAGCTATTCCAGGAACAGCGCAATAATGCACAGGTCCCAGAGGAGAGTCTCCTGACCAGCTCCTTACTGATGACCCCCttccctgagagagacagagaggagcacCCCTGCACCCCCTCGTCTGGGAGGGAGGGGTCCTGTGCCCCCCTGCTCCACCTCCCCAGCCCCCGCAAGAGGAAGAACCCCCCTTCGGTCAGAATGTCCCACCACGATTCACTTAGACagGTAAAAAGCGAGTGGGAAGCAGTGGTTTATGGGAAGACTGAGGACCAGCGGATCATGACAGAGCAGGCCCGGCAGTATCTGGGTAGTACCTACCCATCCTCCGCCTGCACCTCGAGGGCCCTCGTCCTCTGAGGCCTATGTCACCACACACTACACCCGTCCGGCAGAGTTGCTATGTAAACCACGCTCCTTCTCCTAACGACTCTTAGCATACTTACACAATCTGGTGTAGGCAACTCAAATCATTTTGAAAGTTGTGTATTGATAAGATCCCTAAGTGAACACTCAAGTGTACCACAGAATACTTATATAATAATTTTTTTCTCAGTCACACTACCCAAGAACCTTGACGTCCTTGATTTGAGTTTTTGTAGCCATAAATTCCTTGGTTTGTCTTTTGAATACACACAAGCCTAGCCATGTAACAGGTACAGATAAGAAATACTAGATTTTCTGCACTATAATGTGTTCAAACGGAACAACCTGCACATACAGTAAGTAGTAAGCTGTAGAAATAGACTGATTATTACTAGCAGTGGCTGAGTCTCATATTGTTCATATAttgtttaaataaaaaatgaaaaaaatctgTTTTATGATGTAATATTACACGTATATGTATATTTTCTAACTTGTTTGTAGAACTACCCTGTactgctacacctgttgttttcaagtcttaggagagagacagagcgctGTCTGTATGGCACTACTGAGTTGGGGTTGGCTGCAGAGAAGCGATCAGTGTTGAGGAGGTAACTGGTTAGCACTTGTGATGTGACTGTATTGTTCCAAGGCCATACTTTCCTTTAGCAGTCTCAAGTTGAGACATTTGTTGAATGTATTTCATAGCGTGAAACTGCGAAGAAACTCCAAATGGAAGGGTACTTTTCCCCCCGTATTTTATTTATTATCTGTATTCTAAAACGTAGATATTAATATAAGTGTAAATTGAACACAATCTTCCTAAAGCCTTTCCCTGCCCCTAAGATTTGATCTGTCAGTTCTACTTCTTACCTTCTATCGAtctaggttgtgattggggaAGGGTACACTGATCCAAAATCAGAATCCAGTTGTCATGTTTGCTACTGACCAATAGTGCTCAGTGTGCTAAAACGACCATGTTTAGTTGAGGGGATCCTCCTGTTCGCATGAAGGCTGTATGTTCTATTTATTCAATGTttactcatttatttatttaaatacaaAGATAAATgataaaataattatattttcTTCTTATCAGAAAAGGATTGGGCTACCTTTCACCTAATCTCTCCAAATGAGACATAACAAGCAAACATGCACTGCCACTAATTCCTTTTTATTCACTAATTATTTTAACTATCAGATTGAGTTAATTATCATTCGTATAGTGACATCACTGAGTTGTTATTGATAGAACAGTTTCCCCTGGAATCAGTTTGTTTTTTTTGTAGCAGGACCCAGTCTCTAATCATAGACAAATTGCACTTTGCTCATTGTTTTAAGTGTTGTTTCGTTCATTTGTTTGAGAGCATTGCTcgttttatgtgtgtgttttgttaatttttttcaaatccaatgccGTTAGATGAATGTCTCACTACATGTGACGATTGAACATTGACCTAAATAGGTATAGATGGAGCTGCTTGATGTATGTTTTTGCATGGCATGTAAAGATTGAGCTTTTTGTAAAGATGGAAATATTGTAAAGATTAagcttttttttatatattttttagatcAATTGTTTATCAGTAATAATCACAAGTACAGGACAATATAAGATTTTCAACAGacaataaaatataatttttttgttgtatGTCTTCATGTGACAATGCAGTTTTCTATAGCTCTGATTGGTTACCTCTGTAATAAAAGGGTGCAGCAGAGTATCTATATTCCCTGTGGTGATGGTTGGTGTCATTCGTTCCAACAGTCTTCCAACTGTTTAGAATCTGGATTATAATCTGGATTATCTAGCATTAAGTGTGTTTGAGAATAAAAAGGGAATCTCTTCGGGAGAGTTCACATGGAAAGATAATGTATGTTCACCCTCTCTGAGCTCCACAGAGCTTCAGTCTCTGATCTTTCTTATTTTCCATCATCGGCTACACTAAATGTGTATGTTCTGTTGGTTGGTTTGACTTCAGTATGTTTGGTTTGTAACATGTTTGTATGTTAATACTTGGACATCTAACCCTATTTATGAGGGAATTAAATACATTTATAGTAGTTGTTATAATCATGCATGAACAACAAGCAATACGCTGGACCTTTCCAGTACCATGTTTGTACAGTAATCACAGACGTAACACTTGTCTTGTTTTCTGCTGTAATCGTAACCAGGCAACACAATTCCTGCCAACTGCAAATGGAACCATGTACTTAATATGGAATAGTAATAAAATGTTATTACATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1079885 lncRNA upstream 2654 14696113 ~ 14696330 (+) True G947048
TU1079866 lncRNA upstream 27026 14665726 ~ 14671958 (+) False LOC110535322
TU1079859 lncRNA upstream 29738 14665726 ~ 14669246 (+) False LOC110535322
TU1079861 lncRNA upstream 29738 14665726 ~ 14669246 (+) False LOC110535322
TU1079868 lncRNA upstream 29738 14665726 ~ 14669246 (+) False LOC110535322
TU1079894 lncRNA downstream 3025 14718448 ~ 14718683 (+) True G947057
TU1079896 lncRNA downstream 6543 14721966 ~ 14722170 (+) True G947059
TU1080072 lncRNA downstream 26928 14742351 ~ 14742560 (+) True G947207
TU1080118 lncRNA downstream 57946 14773369 ~ 14773842 (+) True G947252
TU1080120 lncRNA downstream 58580 14774003 ~ 14777036 (+) True G947254
XR_002475239.2 mRNA upstream 29848 14665668 ~ 14669136 (+) False LOC110535322
XR_002475240.2 mRNA upstream 29865 14665668 ~ 14669119 (+) False LOC110535322
XM_021620247.2 mRNA upstream 35424 14660285 ~ 14663560 (+) False LOC110535321
XM_021620246.2 mRNA upstream 35424 14660288 ~ 14663560 (+) True LOC110535321
XM_036934964.1 mRNA upstream 39545 14645642 ~ 14659439 (+) False ppp1r42
NM_001124627.1 mRNA downstream 77772 14793195 ~ 14794694 (+) True crf
trnay-gua-3 mRNA downstream 115353 14830776 ~ 14830861 (+) True trnay-gua-3
XM_021620256.2 mRNA downstream 125230 14840653 ~ 14882192 (+) False LOC110535327
XM_021620258.2 mRNA downstream 125230 14840653 ~ 14882192 (+) False LOC110535327
XM_021620259.2 mRNA downstream 125230 14840653 ~ 14882192 (+) True LOC110535327
TU1079869 other upstream 29228 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 114935 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 297340 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 298711 14399862 ~ 14400273 (+) True G946690
TU1079402 other upstream 369648 14318665 ~ 14329336 (+) True G946642
TU1080168 other downstream 171191 14886614 ~ 14887282 (+) True G947301
TU1080689 other downstream 569756 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 722258 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 722258 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 872407 15587830 ~ 15589776 (+) True rnf6

Expression Profile