RNA id: NM_001124627.1



Basic Information


Item Value
RNA id NM_001124627.1
length 994
RNA type mRNA
GC content 0.44
exon number 2
gene id crf
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14793195 ~ 14794694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGGACACACAACGGCTCAACTTGAAGATTCCTGTTGATCCCCTGACATGAAGCTCAATTTACTTGTCACCACCGTGGTTCTGCTGCTTGCCTTCTTACCGCGCTATGAATGTAGGGCTGTCGAGAGCCCTGACGATGTCCAGCGCTCCACCGCTCCACAGCCCGACGCGCAGCAACAGTCTCTTCCCCTCCTGACGCGACTCGGAGAGGAATACTACATCCGACTGGGCAACGAGAACCGCAACTCTGCCGCGTCCGCACCGAAAGTCATGCACCCCAAGGGCTCCCCAGCGGTCTACAACAGAGCCTTGCAGCTCCAGCTGACGCAGCGCCTTCTACAAGGCAAAGTTGGGGACATCAATAGGTTCATCAGCGGCTTCGCGAACCAGCTCGACGACtcgatggagagggggaggaggtccgACGACCCGCCGATATCTCTAGATCTCACGTTCCACATGCTTCGACAGATGATGGAGATGTCCAGAGCGGAACAGTTACAGCAACAAGCCCATAGCAACAGAAAAATGATGGAGATCTTCGGGAAATGAAAACTGCATCAATCCATCCGCCAAAGATTTGTTTTTACGTTTAGCTCAAAACACAATTATCTATACCATAGTGCTGCTTTTCCATCTTTGTTtataatgatttattttataGCTTTAACTTCCAACGATGGAGACTAAATGGGCTTGTACATGACTTGTGTAATTCTCAGATTGTAGCCTGTATCATGCAAGATAAACTATGTCCTGTTAATTTATATTAGGCTACTGTTGTTAAAGTGCTCAATCCAAACTGTAGCATATACAAGTTTCTTTCTTTAAGATATGAACATATTTTTTTGGTAGACCTTATAGGCTTAGGAAGTTAAGTTTTATTGTATGTTATGTTATTTAAGTTTGTTAATAAACTTATGAGCAACCAGTCCATTTTTTTTTGTGCAAGAGAATgtcttatatttatatttttcaataaAATCTGAAAAGTT

Function


GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05256 CRH; corticotropin-releasing hormone

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1080120 lncRNA upstream 16159 14774003 ~ 14777036 (+) True G947254
TU1080118 lncRNA upstream 19353 14773369 ~ 14773842 (+) True G947252
TU1080072 lncRNA upstream 50635 14742351 ~ 14742560 (+) True G947207
TU1079896 lncRNA upstream 71025 14721966 ~ 14722170 (+) True G947059
TU1079894 lncRNA upstream 74512 14718448 ~ 14718683 (+) True G947057
TU1080145 lncRNA downstream 1749 14796443 ~ 14796731 (+) True G947278
TU1080150 lncRNA downstream 13768 14808462 ~ 14808661 (+) True G947283
TU1080153 lncRNA downstream 17637 14812331 ~ 14812543 (+) True G947286
TU1080169 lncRNA downstream 94934 14889628 ~ 14890465 (+) True G947302
TU1080205 lncRNA downstream 105959 14900653 ~ 14900869 (+) True G947338
XM_036934968.1 mRNA upstream 77772 14665667 ~ 14715423 (+) False LOC110535322
XM_036934971.1 mRNA upstream 77772 14665667 ~ 14715423 (+) False LOC110535322
XM_036934972.1 mRNA upstream 77772 14665667 ~ 14715423 (+) False LOC110535322
XM_021620251.2 mRNA upstream 77772 14698984 ~ 14715423 (+) False LOC110535322
XM_036934967.1 mRNA upstream 77772 14698984 ~ 14715423 (+) False LOC110535322
trnay-gua-3 mRNA downstream 36082 14830776 ~ 14830861 (+) True trnay-gua-3
XM_021620256.2 mRNA downstream 45959 14840653 ~ 14882192 (+) False LOC110535327
XM_021620258.2 mRNA downstream 45959 14840653 ~ 14882192 (+) False LOC110535327
XM_021620259.2 mRNA downstream 45959 14840653 ~ 14882192 (+) True LOC110535327
XM_021620268.2 mRNA downstream 110734 14905428 ~ 14918163 (+) False LOC110535331
TU1079869 other upstream 123439 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 209146 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 391551 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 392922 14399862 ~ 14400273 (+) True G946690
TU1079402 other upstream 463859 14318665 ~ 14329336 (+) True G946642
TU1080168 other downstream 91920 14886614 ~ 14887282 (+) True G947301
TU1080689 other downstream 490485 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 642987 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 642987 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 793136 15587830 ~ 15589776 (+) True rnf6

Expression Profile