RNA id: XM_021620258.2


Basic Information

Item Value
RNA id XM_021620258.2
length 3115
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110535327
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14840653 ~ 14882192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttttatttgaattttgATCTGGATCCAGCTCTGACTTTGTTCAATGGAAGTATGTTACCAGCTGCCGGTTTTGCCTCTAGACAGGCCGGTTCCTAAGCATGTCCTCAGCCGGAGAGGAGCCATCAGTTTCAGCTCCAGCTCGTCTCTCTTCGGCGCTCCTGATCCAAGACAGTTGTCTCAGagaCGAGGGGCCATCTCTTATGACAGCTCAGATCAGACCGCTCTGTACATTCGTATGCTCGATGTGAGAGTGAGAAGTCAGGTAGGATTTGACCCAGAAGGAAAAGGTTCCTACTCGTACCTGTGCATCGACTTCCGCACCCTACACTCCTGCTCAGACTCTAGTCTTATCCCTGATCCTGGCTTCAGTTCGGCTGGGCCTGTGTCTGGCAGGAGGCTCCGCAGACTGCTCAGCTTCCAGAGGTACCTGCACTCCTCCCGTCTGCTGCGGGGAACACCCCACCTCAACCCCCTCCACATCCTGGATGAGGACTACACCGGACAGGCCAAGTGTATGCTGGAAAGGGTCGCGACCTGGAATTTCGACATTTTCCTCTATGACAGATTAACCAATGGAAACAGCCTGGTGACGCTGACCTTTCACCTCCTTAACCAGTATGGTCTGTTGGAGCTGTTTCAGCTGGACATGGTAAAGCTGTGGCGCTTCCTGGTCATGGTGCAGGAAGACTACCACAGTCTCAACCCCTACCACAACGCTGTGCACGCCGCTGACGTCACGCAGGCCATGTACTGTTACCTGCGAGAACCCAAGCTGGCCAAGTCCCTGACGTCCTGTGACATCCTCCTGGGCCTGTTGGCAGCCGCCACTCATGACCTGGACCACCCGGGAGTCAACCAGCCCTTCCTCATCAAGACCAACCACTACCTGGCCAAGCTCTACAGGAACTCCTCTGTTCTGGAGAACCATCACTGGAGGTCTGCAGTAGGTCTGCTGAGAGAGACCGGCCTGTTCTCCCACCTGCCTGCTGAGGACGGGCTGAAGATGGAGCATCAACTGGGTTCTCTTATCCTAGCCACTGACATCAGCAGACAGAACGAGTACCTGGGGAAGTTCAGGACACACCTGGACCAGGATGACCTGTACCTGAGCAACGCCAGCCACCGACACTTCATCCTCCAGATGGCTCTGAAGTGTGCGGACATCTGCAACCCCTGCAGACCCTGGGAGCTGAGCAAACAGTGGAGTGAGAAAGTGACAGAAGAGTTCTTCCACCAAGGAGACATTGAGAAGAAGCACCGACTTGAAGTCAGTCCACTGTGTGATAGCCAGAGTAACTCCATGGCAAACATTCAAATTGGTTTCATGACGTACGTGGTGGAGCCTTTGTTTGCTGAGTGGGGCCGGTTCTCTGACACACGTCTGTCCCAGACCATGCTGGGCCACCTGGGGCTGAACAAGGCCAGCTGGGGTGGGTTAGTACAGCAGGAGGGGTTCTCTAGCCCCGAGGAGCTGGAACCTAGCAGCCCTGCCTTCTTCACCATGTCAACGCCCGCCGTCACCGAGTCAGAACCAGAGTCTGCCTCTGCTGCGGAACCCATAGCTGTCACCATGGCAACAGCCACAGGAGAAACCAACTACAAAGAAATACCTCAGGGAAGCAAAGAGTCCTGACACTCCATGTTTGCCCTTAGaatcctgacccctgacccttaaCCGCTAGCCTCGACACACACTggggagagggtgggaggagCGGGGTATGGCATTTAACCCCCCCCTACTCCCACTGCCCCACCAGAACAGTACTCATGTTTTTGTTGCCTTTGCCTCCCATATTTGACAAACcacagattttatttatttattttttaattcctTTCCTTGACATACATAGATACTGCTGCTGTATTTAGTATTTTTATTggcttattttatttatttatttgtcctCTGTAGTTTTAGCCTTACTAATGTAACACCACCATTTTGAAGGCGAAGTGCCATTTTCAAAACAAAGTTCTGTAGGAGGATTTGAAACACACTGAGTATTGAAGAGATGCTCTCTAAAGACCGCACAGAGATGCCGTGATGTGTGTTGATGCGTTTGTAAGGAATCTTCTTCCTGAAGATAATGTGACAAGCCCAGTCCTTTTGCTGCCTCTATGAAGACTGTTTACAGATGTCTTGTTTGTTTGTCCTTGTTGTCCATTCGAAATGAATCATTATGGTTCTGCGATATGCCTTCTAAGCACAGATGCGAAGAACCACTAGTGTTTGAATTGTCGGCACACTGCTGAAGttgactgatacacacacacacacaccagatgccATAAAGAAACACCCCCTGTGCTCCATtgtattcatttcttccttgcaCTGCCAAAAGACTGAAATATTGGACACAACTTCTGTTCTGAGAGAACTTGGGTTAGACAGAATGGTATTCTAGAATGTAACTAATATGAAGAAGCATTGTTGTCAGTGACTGTAGAGAATGCATGACCTCTAACCCTGGACCAGTCACTGAGGCATAGTACACACACCCCATCTGAAAACTCACAACACCACTCACGCAGAGTGGACTGTAGGAGGGAAGTTTACTGTGGTTTAGCTACCTGTGAAACAGCTGTTTACTTCTACTGAATGGGACTCTCTCAGAATGTCTCTCATTATCATCATAGCCACATGCAACCTAGGACTGCTGTACTGATGCCTTATAACTATGCACACTGCGCTAAGTGACCAAACCAGCTCCCTACCACTAGTTCTTCTAGTAATCTCATGAAGTACATCGTGTGCTTGTCCTCTTAATGCACTGTCTGATTTTCTTTTGcctttttgtgaggaaaaactgAACTCAAACACATTCTGTATATAAacgtttttagttttttttacattccatctccatttatacatttttttatttttattctgtagACTGCACAAAGATTTTAATAACAGGTGCTTTTTCCTATTTTAGCTGATTTTTAGTATTTTCGCTGTAAGACTGTTTACAATTTGTTGCGACAGCCATTTTGGGAAGAAGACTTGTCAAGCCATTTTGTACAGGATTTGCCGTGTTGACCTTTTGATACATGCTTGTTGCCGTTTACATTTTGATAAATAAAACAAGTTGACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080153 lncRNA upstream 28110 14812331 ~ 14812543 (+) True G947286
TU1080150 lncRNA upstream 31992 14808462 ~ 14808661 (+) True G947283
TU1080145 lncRNA upstream 43922 14796443 ~ 14796731 (+) True G947278
TU1080120 lncRNA upstream 63617 14774003 ~ 14777036 (+) True G947254
TU1080118 lncRNA upstream 66811 14773369 ~ 14773842 (+) True G947252
TU1080169 lncRNA downstream 7436 14889628 ~ 14890465 (+) True G947302
TU1080205 lncRNA downstream 18461 14900653 ~ 14900869 (+) True G947338
TU1080144 lncRNA downstream 36962 14919154 ~ 14919395 (+) True G947277
TU1080300 lncRNA downstream 45311 14927503 ~ 14927739 (+) True G947426
TU1080312 lncRNA downstream 53465 14935657 ~ 14935868 (+) True G947438
trnay-gua-3 mRNA upstream 9792 14830776 ~ 14830861 (+) True trnay-gua-3
NM_001124627.1 mRNA upstream 45959 14793195 ~ 14794694 (+) True crf
XM_036934973.1 mRNA upstream 125230 14698984 ~ 14715423 (+) False LOC110535322
XM_021620268.2 mRNA downstream 23236 14905428 ~ 14918163 (+) False LOC110535331
XM_021620267.2 mRNA downstream 23243 14905435 ~ 14918163 (+) True LOC110535331
XR_005034577.1 mRNA downstream 115687 14997879 ~ 15016727 (+) True LOC118937318
XM_021620272.2 mRNA downstream 387420 15269612 ~ 15277101 (+) True abhd10b
XM_021620273.2 mRNA downstream 396282 15278474 ~ 15282213 (+) False tagln3b
TU1079869 other upstream 170897 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 256604 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 439009 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 440380 14399862 ~ 14400273 (+) True G946690
TU1079402 other upstream 511317 14318665 ~ 14329336 (+) True G946642
TU1080168 other downstream 4422 14886614 ~ 14887282 (+) True G947301
TU1080689 other downstream 402987 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 555489 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 555489 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 705638 15587830 ~ 15589776 (+) True rnf6

Expression Profile