RNA id: XM_021620266.2


Basic Information

Item Value
RNA id XM_021620266.2
length 2906
RNA type mRNA
GC content 0.45
exon number 9
gene id mtfr1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14884317 ~ 14897579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGGTTCATAAAAATTATCCAACAACCCATACGTCAAGAAATAAAAATTTTATCCCGCCCACTCACTCCGCCAGGAACGCGGTTACTCAAGACTAGAGTGGAGATTTGGGAAACACATTTTTCCTTGGATTTCGACAAAGTCAGTCTCACTACCTCACAAAGAAGATGCTTTCTTGTGTACAACTGCTTCTGTGAAAACACATCGATAGAATGAGTAAAGAAAGTCCAAGAATAGAAATGGACCTGGCCTTTGGCTTTTCAGGCAAGGCGTATGGCTCCTCAAGGAGTATTGTGAGAAGAATAGCCACCAATCTTCCCCTCAAACCATGCCCCAGGGTCCATTTTCAGCTCGATCCTTACACTGAGGACAGTAGTGTCCTGAATAGCACCGGGAGACGGAATGGACTGCTGGCCTCTCTGGCTGATGTCTGCTGGATCGACGAGGAGGAGAAAAATGACTGGTTTGGATTTGGGAGACTGAGGTCAGAGACACCGTCAGGGCTCATGTTTCGTTCTCACCCGCCTCAGCCCAAACAACAACAACCTTTTCCCAGACGGAGGTCATTACCCAGGCTGCACAAGGCCGAGCCGGAGCCCCAGGGTCAGACCTGCAGCAACGATGAGGCCATCCAGAAGATCAGTGCTCTAGAGACAGAGCTGGCTAAACTCAGAGCCCAGATCGCACAGATAGTACTGACCCAGGAGCAGAACGCACTGACACCAGGAGGACCTCCCGCCCCAGGTGGCCCTCCTCCACCCTGCGTCCCTCCACCTCCCCCGccgcctcctccccctccacccccactcATGGGGCTCCAGCAGAGCTTCTCAGTCATTGACCTCATCCAGGAGCGCCGTGGGAAGAAGACTGAGGGCCAGACTCTGCTGGACCAGGGGCCCAAGCAGGCAGAGGTTCCCAATATGCTGGACGTGCTCAAAGACATTGGCAAAGTCAAGCTGCGCCCTGCCAAGAGacggCCAGAGGAGAGCCAAGCCAAACCAAGAGAGCCCACAGACGCTGCGTCTCTTATCGCTAATGCCCTGAAGCGCAAGTTCGCCCATCGCTATCGCCACAACAGCAGTGAGGATAAGGAGTTTGACTTCCCAGCCTCTGAACTGAAACCTTTCTGTTATGAATTCCCCAAGACCAACAAGAAAGTAGAGATTCCCCTGGTAAGGCAGTCCCGGTTGAAAACCCCAGCCCCTGTAGTGAAACCATGCCCAGACACCCCCCTGTTTGGGCAGCACATGTTGAAATCTACTGGCAAGAGAAATCTCCTCTGAGCACCCACAGAGGTGGGATGGAATTCTGGACTTGTTCAGAGTTCTGGACCTTCAGACAGTCGTGGACACTAAGTGCCTTATGAAGCGGTTTGTCAGCTGTCTCTGGATGGACACATGGTTTCTGACTAGATATTTAGTTCATCTGCTCTCCATTCCTGCTCAGCAACAGTGTTGCATTGCCTCAGTCTTCTTCAGTTCTTGCACTTTGATAACATACAGGATCTGTTTTTGTGTGTACCACTTCGATTTTAACTTGTTTTAATCAAATGTCTATTTTTGTTTCTTAAATGACGCCAGTTTCAAAGTCTTTGATCTTAAAGGTCAAACTTTGCTGTACAGATTTGCTGTACATCTTTATTTTTTGTTATCATAACTAAATTCCAATATGAGGCACACCAGTATTTTATGTTCTGGATACACACTGACACTACAGACTCTTAACATTCCTCTCAGCTGACAACTGTTCATAACTACATTTATATATGGGAATGAACCTTCTCTAAATCACAGATGGAAAGGTGTATCCTTTTTGCATGCCCTTCTAAAGGCAGTTGTATTCCTCTTTGCCTCACTGGGTATTTGCTGTCTACTGCTTGCTGTGGGTAGAGAGAAATGTATGCAGAGGAGAGGGAACACTTTGTCATTTGGTCCCTCTTGTAGAGTATTGGGCCATTGACTAGAATGCTATTGACAAAAACAGTCTAATTTCTGATTTCTAGATCTCTTATTTATGTTTTGTTTTGAACTGAATTTAGTTAATACTTGATACAAATAATGAAGTTGTAGCTGTTATCAATGCTATCAAAGCATGTATGGTTGAGATGTAATTGTATTTATGTTTTGTTTTAGACTGGCTCTCTTTTTAGCTTTTTTGAGTTGAACTGGGACCAGTTCTGTTTCTGGAAACACTGTTACCATACAGTACCTCAGTATGAAGACTGGACCAAATGAATCTATGGTGACAGTGTTGTCTTAATGCAGTCTGGGGGGAACAAGGTTAGTGTTGAACTAAAGCTTAACACTGGGGTCTACCAGTCATTTAAACTACAACTTACCAATGCTGGGCATGATTATTATTTTTGTTCCATTGTGTTCCTGATCTGGCATTATCATTCAGTTGTATTTGGTTATGGTTAGAAGCCAAATGGTATCTGGGGATTTAGTGCTACTTGATGACAAGCTGAGTATCCCTCTGTTTATATCCAGATGCCTTGATGCTAAGAATATTTCATACCATAACCACTGTTCCTCCTTGGATATATTCTGTTGCTGGTTAAGAATTTCATACTTCATATTTTTGTGGCATAACAAAGGTGTTCTCTGCACACCTTGACACAGACATGGCATGACCAATATGACTATTTAGGGGGAAAACATTTCAGATAAATCTAACACTAAGACAATCAATGACCAGTGTGTTTATCattgacatactgtatgtgctgtaccGATATCTATTTCCTGCTCAGTGTGTTTAAGCTTTGAACTTGAACTGCATGGTGGGAGAACATGGACAACTCAACTGTCAGTGATACTTGATGTAAAACACCATCTGTGTTGTGAAATGTCTTCCATACTTGAAAGAAAATTCATGAATAAAACCAAAATGATACTTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080223 lncRNA downstream 58688 14815513 ~ 14825629 (-) True LOC110535326
TU1080218 lncRNA downstream 75573 14808409 ~ 14808744 (-) True G947347
TU1080215 lncRNA downstream 78519 14805512 ~ 14805798 (-) True G947344
TU1080128 lncRNA downstream 102923 14781113 ~ 14781394 (-) True G947262
TU1080108 lncRNA downstream 115944 14768100 ~ 14768373 (-) True G947242
TU1080280 lncRNA upstream 7989 14905568 ~ 14906913 (-) True G947407
TU1080313 lncRNA upstream 38293 14935872 ~ 14936076 (-) True G947439
TU1080385 lncRNA upstream 91237 14988816 ~ 14989049 (-) True G947511
TU1080423 lncRNA upstream 123958 15021537 ~ 15021801 (-) True G947547
TU1080425 lncRNA upstream 124494 15022073 ~ 15022498 (-) True G947549
XM_021620264.2 mRNA downstream 43658 14830974 ~ 14840659 (-) True LOC110535328
XM_021620262.2 mRNA downstream 43986 14830974 ~ 14840331 (-) False LOC110535328
XM_021620263.2 mRNA downstream 44275 14830974 ~ 14840042 (-) False LOC110535328
XM_036934977.1 mRNA downstream 44279 14830974 ~ 14840038 (-) False LOC110535328
XM_036934978.1 mRNA downstream 44279 14830974 ~ 14840038 (-) False LOC110535328
XM_021620269.2 mRNA upstream 182945 15080524 ~ 15082767 (-) True LOC110535332
XM_036936642.1 mRNA upstream 321427 15219006 ~ 15221030 (-) True LOC118937468
XM_021620270.2 mRNA upstream 353692 15251271 ~ 15268657 (-) True LOC110535333
XM_036934988.1 mRNA upstream 541836 15439415 ~ 15455905 (-) False pan3
XM_036934989.1 mRNA upstream 541836 15439415 ~ 15455911 (-) False pan3
TU1079569 other downstream 568631 14312512 ~ 14315686 (-) True ly86
TU1078013 other downstream 2490179 12393397 ~ 12394138 (-) True G945345
TU1076845 other downstream 2525438 12348249 ~ 12358879 (-) True LOC110536549
TU1075312 other downstream 3803800 11078431 ~ 11080517 (-) False LOC110536548
TU1075313 other downstream 3807296 11074711 ~ 11077021 (-) False LOC110536548
TU1080652 other upstream 308852 15206431 ~ 15209597 (-) True G947750
TU1080827 other upstream 468371 15365950 ~ 15366301 (-) True G947894
TU1081124 other upstream 553748 15451327 ~ 15455744 (-) True pan3
TU1081160 other upstream 583089 15480668 ~ 15485240 (-) False pdx1
TU1081161 other upstream 583089 15480668 ~ 15484794 (-) True pdx1

Expression Profile

XM_021620266.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
End of interactive chart.

XM_021620266.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021620266.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.