RNA id: XM_021620267.2


Basic Information

Item Value
RNA id XM_021620267.2
length 4393
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110535331
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14905428 ~ 14918163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAtttggtctatcttgggttagttattaACATCTTTGgccctgctgcctgacagaaaaaAACGCTCTGATTGGCTCTTCGTCTTGACAGTCACAACGGAACTGTCCAATCAACTGTCTTCACACAGAGGCCGTGATGAATCGTAAAATGTATgcgatagctagctaacgttagctatttgaCGAAATTGTATGACCGAAACGTCTTTCTTTTTTTTAGCATAATCGCTGTCATTGTAAAGTCAAAATAACGGGAGATCACTTGGAGAAAAGTGTAAAGAGGCTGATTTGATGTGCACGGCACTGGGAGAGGAGGCACCATGAGTAGGGAGTTGGATGCGCTGACTGTGGTGAACCAGCTACGAGATCTCGCAGCTGACCCTCTCAACAGACGAGCCATAGTACAGGACAACGGCTGCTTACCGGGGCTCATCCTCTTTCTGGACCACCCCAACCCTCAGGTCGTCTACTCAGCATTATTGGCAGTGCGCTACCTGGCAGAATGTCGGACCAACAGAGAGAAGATGAAGGGAGAGCTGGGCATGATGCTGAGTCTGCAGAATGTCATGCAGAAGGGCAGCTCCCCAGGGGAGACCAAGCTGCTGGCGTCTGAAATCTATGAGATTCTGCAGGCAGCTGGTAATGAGGCAGAGCAGGCTGAGGCTGCCTCCTGCAGACGCAAGGCTCACTTCTTCCTGGGCTCCACCAACAAGAAGGCCAAGACTGTGGTGCTGCACATCGACGGCCTGGATGACTCGACTCGTAGAAGTCTGTGTGAGGAGGCCCTGTTGAAGATCCGGGGGGTGATCAGCTTCACCTTCCAGATGGCTGTGAAGAGATGTGTGGTCAGGATCCGCTCTGACATCAAGGCTGAGGCACTGGGCACGGCGATCAACTCCACCAAGGTGATGAAGGCTGCACAGGTGGtgaagggagaggatggaggagagCTGATGCTTCCATTCCAGGAGGGTGCAGAGGAAGCAGTGGTGGAGCACAACGAGGACATCCCAGACTACCTCCCTGAGGAGGAAAGCCCGTCTCAGGAGCAGGACAAGGCCGTGACGCGCGTTGGCTCCATCACAGATGGCGTGGGCTGGCTCAGCACAGCCGCCAACTTCCTGTCCCGCTCCTTCTACTGGTGACCACTTCCTGTGTCAGTCACAATCCCAAGCCCACTAACCACCACCCGACGGTCACCTTAGCCCCGCCTATTTCATCCAGCCCTTCTACACTGCTCTCTAGTCCCTCTCAGCAGCCACACAGAGTACCACTCTGCTCAGTGTACTAGGAGCACTGGACTGCCAAGTGCAACCTGCAATAACCTTTACTTGTTTATAAAACAAAATTAGCTAAGAAAATGCTAGCTACTGTACCGCAGGCTGAACTCGCTGCACACTAAATACACTCAAGTCAATCTCTACTCGTTATGCGTCTCATAAGCCATAGACCGAGGACTTCAGAATCAGCTTACATCTCTTTTCCTTTAGGGAAGTAGTTTTCTCTGGCGCCCGATGGGTCCATCATCTCTTTGAAACCAAATTGCATTGTGGGAATGGATTGTGCTGCATCGTCTTCTGAGTTTGAGCGATTGCATTGAATGATGCTGCGCTTGTGGAAATTGGAGTGTTTTTGTGCTTATCTGTTGCTTCTTTTCCTCATCTTTGTTTTGATAAGGTTTTTTCACCCTTTTTCTGTTTGCCAATTTGATAATCCCTAATTCACTTTTCGTTCCCCTGCGGTGGGGGGCTTTTGTTTGTGCCAATCTTGCTCGCTGCCTTGTTTTCATCATGTTTATGTCTCTATCCTtcgttaggtgccttttggactCTTCACTGCCATGTATTGCTATTTATTTGTCCAGTTTAACTTCACTCGAAACCTCTGAAGCCTTGTGAATAATGCAAACTGTCTTCTCTGCGTTGGGAGCTATTTCCCCTAACAGCTCATGTCCCTCACAGAGAGATGTCATATTATTAGCGAGACAAAGAGACCCCGGTGAAGGACGGCTGATGACAGGACATTAGCTGCTCCATAGAGGACGGATGCAGAAAGGAAAGGGAAATGATGcttactgttatactgtagaaAGTTGACTTTAGTACACATTACTTCTCGTTAAATCCTCCTAGGACTTGGGAGTCTCTTGGTTGTACAGTGGAGGTGAGTGTTCAGACGGATCGTTGCTTATGTTGAAGTTGTGATGCGTTGACTCGCATCAAATTGACTTCTTTAGCCTTTTCCCCATCATCAGTGTTTTCATGTCGGATTATCATATGGTCATCTGTAGTCTGAAAGGTCTGATTTAGAGTAGACAACCGGTCCTAAATCGGTGTGATGGAGACCTCGGGGCTTGATAGCCACCTGCTAAATGTGTGTCCCTCACCCTGAAGCCCATCAACATGTTCACTATAGTGGCCCAGCCACTACATATGTTTGTTTTTTACCCCCTTTAGCCAGCAGTGTCCTTAAAATGACATACACATACGGACACACCATTGCTGCTGTCAGAAGGACACTAGAGGTGTAAGCAGCATCACTGGTCTGGATATGTACATTTAAAATtttggtcacattaacacatgtttagcagatgttatcgctggtgtagcgaaatgcttgtgttcctagctccaacagtgcagtagtatctaacaattcacaacaatacacacatctaaaagaatGGAAGTAAGAAATATGTCAATATTCGGAcaagcaatgttggagtggcattgactaaaacacagtaagagtagaatacagtatatacatctgaAATGAGTTAAACAGTATTtaaacatttattaaagtgactagtgttccattgttaaagtgaccagttagtctatgtatatagggcagcagcctctaaggtgcagggttgagtaactgggtggtacccggctagtgatggctgtttaacagtctaatggccttgagatagaagctgtttttcagtctctcggtccctgctttgatgcacctgtactgaccttaccttctggatgatagcagggtgaacaggcagtggctcgggtggttgttgtccttgatgatctttttggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggcagtgttccCCCATTcatgcgttgggcagactgcaccaccctctggtaaatggtgcctggtttcctagCAATATTAATCATAATGTTAATCTCAGTCCTTATTTCAGGaagaaatcatgtttttttttttttcaacagttaTTCTTTGTCTCCATTTTACTTTGTGGTTGAAAGATACAacacatttaaaatgtaaatattgCCCTTTTTGAAGAGGTTTTGACTGACATTGAAGTTCGATATTAGGTTTGTGCATAGATTCCTCTTTGGATTGACTTTTTATTCCTTTTGAGGAACCCTTTCACACCTGTAATCCTTTTCCAGGTGAATTATGGTCTCGTTGTGTAAAGGAAGTGCTGACCAGACAATAGTTATGCTTCTGGAGGCCAAACTCACAGCTCACACAGCTAGTAGGATGGATGgatttactgcagtgggctaaatcagggtcacagtgtttcttggtagtctgaAACAGATCTACTTTGAAAAGTCTACACCTCACACACAAGGTTATGGGCTTAAAACAAGAAGACACCTGAACCATGTCAGATctagttgaaatgtattacattttgagtttgcatcctaatattacacttttatatacatcacagaagactgaaatataatgaaataatgtttattaattatgaaaaatattaataacattccacccataagGCCACTGGTGGGGCGATTTGGTTGTTTTACTACAAGAAAGGCCTACAATAACCTCAGAATTGATCTAATAACGTATATCCACTACAGTGAGTTTATTCTCTATCTGCATCCCTCAGAAGCAGTGCTTACGAACAACAAGTTGTAGGATGAAGTCATCACTTCTATTTAATCCTTTGTCTTCCTTTTTTTGTTTAACATGAACAGCATCAGTCATGACTTAAGTTGCAACATGTAAAGTACATTTTATTATAAGTTGCACTAGTACTGTATGTCAAATACTTGGAAAAGTTTTTTTTGTCTCGGTTTAAATCTcttatgtcaaatcaaatgttaatttgtgccgaataaaacaggtgtagactttaccgtgaaatgcttaccccttaaccaacaatgcagagttaaataaGGAAATACCCTATTGTTTAATAGTCACTCCATCAAGATGGCTGACAGAATCATGTAGCAAGTCCTTAGAATAGCAGACACTTCTCATGTACAGTGTGTATCTGCTGTCTAATGTATTTCAGATCTGAAAACGGTTGATTCCCAATTTACGATTAAGGCAAAGAATATTAAAAATAACTTTAAAATGTAAA

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17306 ARMC1; armadillo repeat-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080205 lncRNA upstream 4566 14900653 ~ 14900869 (+) True G947338
TU1080169 lncRNA upstream 14970 14889628 ~ 14890465 (+) True G947302
TU1080153 lncRNA upstream 92892 14812331 ~ 14812543 (+) True G947286
TU1080150 lncRNA upstream 96774 14808462 ~ 14808661 (+) True G947283
TU1080145 lncRNA upstream 108704 14796443 ~ 14796731 (+) True G947278
TU1080144 lncRNA downstream 991 14919154 ~ 14919395 (+) True G947277
TU1080300 lncRNA downstream 9340 14927503 ~ 14927739 (+) True G947426
TU1080312 lncRNA downstream 17494 14935657 ~ 14935868 (+) True G947438
TU1080314 lncRNA downstream 18515 14936678 ~ 14936904 (+) True G947440
TU1080317 lncRNA downstream 22255 14940418 ~ 14940622 (+) True G947443
XM_021620256.2 mRNA upstream 23243 14840653 ~ 14882192 (+) False LOC110535327
XM_021620258.2 mRNA upstream 23243 14840653 ~ 14882192 (+) False LOC110535327
XM_021620259.2 mRNA upstream 23243 14840653 ~ 14882192 (+) True LOC110535327
trnay-gua-3 mRNA upstream 74574 14830776 ~ 14830861 (+) True trnay-gua-3
NM_001124627.1 mRNA upstream 110741 14793195 ~ 14794694 (+) True crf
XR_005034577.1 mRNA downstream 79716 14997879 ~ 15016727 (+) True LOC118937318
XM_021620272.2 mRNA downstream 351449 15269612 ~ 15277101 (+) True abhd10b
XM_021620273.2 mRNA downstream 360311 15278474 ~ 15282213 (+) False tagln3b
XM_036934980.1 mRNA downstream 360845 15279008 ~ 15282213 (+) True tagln3b
LOC110536556 mRNA downstream 365132 15283295 ~ 15284424 (+) True LOC110536556
TU1080168 other upstream 18153 14886614 ~ 14887282 (+) True G947301
TU1079869 other upstream 235679 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 321386 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 503791 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 505162 14399862 ~ 14400273 (+) True G946690
TU1080689 other downstream 367016 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 519518 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 519518 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 669667 15587830 ~ 15589776 (+) True rnf6
TU1080943 other downstream 733811 15651974 ~ 15659462 (+) False atp8a2

Expression Profile