RNA id: XR_005034577.1


Basic Information

Item Value
RNA id XR_005034577.1
length 1803
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118937318
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14997879 ~ 15016727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGAGTGAGACACTCTGTCACCAAACAAAACATTCAACTGTGGCGTCATTGGGCCGCACCCCAGATGTTTTTGATCCAGCCCCAAACATTTTGAGAGGTGGACCGCTCACGTCCCTTGAGCCGTCCCTCACCCCTACAGCACCGGTTAGATGTCAATGTCATCACTCAGCAAAACGCCTGTCACTCAGTCAGAGTCTGCAGCATAGCACAGAGCAAATACGGACcggatgagagaggagagcagtCAAGAGACAGCAACAGACGACACAGAGAAAAcgatggagagaggcagaggagggGTCAGAAAGCTGTTTGAAAGGCGATCCCGTAATGACGACATCTGTTTTCATATGGTCGTTGACACGTAGCACCCGAAATCAGACGTCATCCTGTCCAAACCCACGGCTGCCAGACAGCATTCCAACCTCTGATTGGTTCTGACAAGCCCCTGACAGCTCTGGAGGTGAGGAGGGCAAGTGACAAAGGGCAAGCAGGGGATGAGCCAACCAAATCAGGGtatacgcccccccccccccccccccccccccatacatgAGACAAATCAGAGACGCTTCAACGTGAGTGTGTGACAGAAAAAGATAGGTTAAAGAGTTGAAAAATAATTGTTATTTAGTATTTATCAGAACAAAGGGAACTCTCACTGCCTCATATTTAAAGTATACAACCTCCTTGTTGTTGTAGCACGGGTGGCTAAATGTAGCATGTAGGTTCTGTGTCTGGTGGATGATGTTGTGAATTTAAAGGGGCACCACCTGCCGTGATAGATATCAGGGTCTTGTATCGCCGCGCAGACAGCTGAGCACTTCAGGTGCCAAAGAGCCTTCCATGACATTGAGCGTTAAGCAGATTTTTGCCAGCAGTTCCATTTgatcacttctccctctctcagaccCATACGGAATCATCCACTCGATATAAGCACGATTTATTCAACTTCTTGATGAAGAAAGACATGCTCAAATGTGCCATGATTGAAGAGACTTGTGATTTAGAACAATGACACCTAACTTAAAAGACCATTCGATCACATCTGTAACATTCCTGTTGTAAAGAACGTGGATAGTGTGTGTCAGTCTTGGGTTCTCAGGGCAAAGCGGATGGAGGTTGTGTTGTTCTCATGTGGACCAGTCGGCAGTGTGACCTTGCATTAGTGCATATGCTCACAGCAGGGTTACTGGTTGGGGGCATGATCTGTCAGCCTTTGTTTATGAAGCTCACACAGCACAGGACTGTAAGATAACATATTTGATGTAATTAGTGGTCAGTAATAACACACTATAAGCGTCAGGAGAAAGAGTgtttggttttggagcagttgttTAGATTTTTTGTAGTATGTTATTTTTGTGATAATATTTGTTTTAATATGTCTGCTGATGTCTATATTtccaaaacataaaacacatGAAATTATAAAACTTGTGAACAGTCATCTAGTTCTGGATTAGATATGGGTTAGATAGGACAGATATGGGTTAGATATGATAGATATGGGTTAGATAGGACTGATATGGGTTAGATATGATAGATATGGGTTATATAGGATAGATATGGGATAGATATGATATATATGGTTTCAATATGATAGATATGGGTTAAATAGGATAGATTTTGGTTAGATATGATATATGTGGGTTAGATGCGATATATATGGGttcccactcaggagactgaaaagatttggtatgggtcctcagatcctcaaaaggttctacagctgcaccactgagagtatcctgactggttgcatcactgcctggtatggcaattgctcggcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080390 lncRNA upstream 6682 14990946 ~ 14991197 (+) True G947516
TU1080373 lncRNA upstream 15502 14982138 ~ 14982377 (+) True G947499
TU1080349 lncRNA upstream 31864 14965632 ~ 14966015 (+) True G947475
TU1080348 lncRNA upstream 32391 14965275 ~ 14965488 (+) True G947474
TU1080334 lncRNA upstream 40507 14957143 ~ 14957372 (+) True G947460
TU1080474 lncRNA downstream 66124 15082851 ~ 15083053 (+) True G947594
TU1080479 lncRNA downstream 72365 15089092 ~ 15089404 (+) True G947599
TU1080532 lncRNA downstream 145007 15161734 ~ 15172265 (+) True G947648
TU1080539 lncRNA downstream 159736 15176463 ~ 15176755 (+) True G947654
TU1080546 lncRNA downstream 171677 15188404 ~ 15188626 (+) True G947661
XM_021620268.2 mRNA upstream 79716 14905428 ~ 14918163 (+) False LOC110535331
XM_021620267.2 mRNA upstream 79716 14905435 ~ 14918163 (+) True LOC110535331
XM_021620256.2 mRNA upstream 115687 14840653 ~ 14882192 (+) False LOC110535327
XM_021620258.2 mRNA upstream 115687 14840653 ~ 14882192 (+) False LOC110535327
XM_021620259.2 mRNA upstream 115687 14840653 ~ 14882192 (+) True LOC110535327
XM_021620272.2 mRNA downstream 252885 15269612 ~ 15277101 (+) True abhd10b
XM_021620273.2 mRNA downstream 261747 15278474 ~ 15282213 (+) False tagln3b
XM_036934980.1 mRNA downstream 262281 15279008 ~ 15282213 (+) True tagln3b
LOC110536556 mRNA downstream 266568 15283295 ~ 15284424 (+) True LOC110536556
XM_036934981.1 mRNA downstream 268315 15285042 ~ 15320246 (+) False spata13
TU1080168 other upstream 110597 14886614 ~ 14887282 (+) True G947301
TU1079869 other upstream 328123 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 413830 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 596235 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 597606 14399862 ~ 14400273 (+) True G946690
TU1080689 other downstream 268452 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 420954 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 420954 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 571103 15587830 ~ 15589776 (+) True rnf6
TU1080943 other downstream 635247 15651974 ~ 15659462 (+) False atp8a2

Expression Profile