RNA id: XM_036934980.1


Basic Information

Item Value
RNA id XM_036934980.1
length 2208
RNA type mRNA
GC content 0.48
exon number 5
gene id tagln3b
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15278474 ~ 15282213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCCCTGTGCAGGACGGGTGCCAAGGACCACACCCATTCCGGCAAGTGCTCTGGTTCTCTGGGGATGTGCCTGTCCTGTAAGGGACACAGTTGCCATTAGGGAGAAAGCAGAGGATGGAGTGTGAGGAAAGGACGTGAAATTAGGAAAACAACAGGTGATGCAGTTTATGATAGAAAAACGACGACAGGTAGACTAATGGTtaaaagcgttgggccagtaagcgAAAAGTTCGAATCCCGAGCCGATTAGGTGAAAAACCTTATATTGAGCAAGGCACTAACCCTAATTTATCATCAGGTGCAGGCTGCCAGTGCTGAAACTGCTCCAGGGTGTTGGTCAGCAGAGCTGCAGACTACTTGTCCGTCTGTCTGGGTGAGCAGGACAGAAGGAGCAATGGCTAACAGGGGACCCAGTTACGGGCTGAGCAAGGAGGTGCAGGAGAAGATAGAGCTGAAGTATAATCTAGACTTGGAGGCCCGGCTGGTGGACTGGATCGTAGCTCAGTGTGGGGGGAACCTGGAGAGACCACAGCCAGGCAGACAGAACTTCCAGACATGGCTGATGGATGGAACAATTCTCTGTAGGCTCATCAATAGCCTGTACCCGCGTGGTAAGGAGCCAATCAAGAAGATTCTGGAGACACAGATGGCCTTTAAGCAGATGGAGAAGATCTCCCAGTTCCTGCAGGCAGCAGAGGTCTACGGAGTCATCACCACAGACATCTTCCAGACCGTGGACCTGTGGGAAGGGAAGGATATGGCCGCAGTGCAGAGAACCCTGATGGCCCTAGGTAGTGTCGCCCTCACCAAGGACGATGGACATTACCGTGGCGACCGCGACTGGTTCCACAGGAAAGCCCAGGGTTACCGGCGAGAGTTCTCTGAGGACCAGCTTCGTCAAGGCCAGAGTCTGATTGGTCTGCAGATGGGAAGCAACCGCGGGGCCTCTCAGTCTGGCATGACAGGCTACGGATCGCACCGCCAGATCATGTAGAGACACCAGCCAGCCGCTCAGCCAGCTGCCAGCCTCTCCCTCTGCATGGCTGTGTACTCCAGAAGAAAGCTCCATCACGCCCCTGGAACCTCATGATATGACCCAACCACTTTTCCCCCTTCCCCAGAAGCACTAGCAAATCACacgagcacacacatacacacacacacacacacacacacacacacacacatgcttttaCTGTTCATCCTCAACCCAAACAGAGTGCTCCTTATACCCCAACCACAATTCTATAGACCTCAGTGCTTTCTGCTTCCCCCACCCCCGCTCTCCATCCAAATGGTCCCACTCTCTCCATTCATATGGTcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatatggtcccactctctccatccatataGTCCTGCTAGCCATTCCCTTCAGTGGATGAAGTCTTCGTAATTCAGTCGGTACAGAGAACCCAAGATTGAAGTCATCCCTCTACAAAACAAGCAAATAGCATTTTACACTTCTAACAAATATTACAGCACGAAACGTTATAGCATGTTACATCTTTTAATTAACTGTTTGTTTgtatgtacagtaggtgtgtctGAGTCATTGTATAGTCCTTTGGGAGGGTTTGCTATACCTCATGAAAAGTTTAATGTGTAACCGAATGGAACTCGGTGAACGATGAGGCCCCTGTGAAGACTTTGCGGTAACTTCTGTAACCAAATGACCATCACATTGTGCCTGGTTAATATAGTAAAGGGACCATAAACTATGCCTTGTATAAGAGACGCCACCCACCCTAATGCAGAGGAATTCATTGACCTAAATTCAGTTCTGTTTTTGTACTAACATTCTGTGCTGTGCATTTATTACTTATGTATAATTGATGTAATGTACTTGTATGTGCCCACTGTCCATGTGTGTTTCAGCCAATCCCATGATTGTTAAAGACCCACAGTATGAAAGTGACAGTAGGATCATTTTCAGGCCTGATATTGCttgaatgtatttttttccccttcaATGTAATTTGTCATGTTTACATAAACAAATATGTTTATATCTGAATCATTGTGTGTAGAAAACATAATAAATTAGGTGAAAACTGA

Function

GO: NA

KEGG:

id description
K20526 TAGLN; transgelin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080677 lncRNA upstream 32133 15246427 ~ 15246875 (+) True G947772
TU1080670 lncRNA upstream 37566 15241222 ~ 15241442 (+) True G947765
TU1080667 lncRNA upstream 44248 15234283 ~ 15234760 (+) True G947762
TU1080666 lncRNA upstream 46070 15232736 ~ 15232938 (+) True G947761
TU1080665 lncRNA upstream 46683 15232010 ~ 15232325 (+) True G947760
TU1080724 lncRNA downstream 55291 15337504 ~ 15337795 (+) True G947810
TU1080725 lncRNA downstream 55711 15337924 ~ 15338191 (+) True G947811
TU1080727 lncRNA downstream 57454 15339667 ~ 15339910 (+) True G947813
TU1080820 lncRNA downstream 71480 15353693 ~ 15353931 (+) False LOC110536557
TU1080821 lncRNA downstream 72039 15354252 ~ 15355812 (+) True LOC110536557
XM_021620272.2 mRNA upstream 1907 15269612 ~ 15277101 (+) True abhd10b
XR_005034577.1 mRNA upstream 262281 14997879 ~ 15016727 (+) True LOC118937318
XM_021620268.2 mRNA upstream 360845 14905428 ~ 14918163 (+) False LOC110535331
XM_021620267.2 mRNA upstream 360845 14905435 ~ 14918163 (+) True LOC110535331
XM_021620259.2 mRNA upstream 396816 14840653 ~ 14882192 (+) True LOC110535327
LOC110536556 mRNA downstream 1082 15283295 ~ 15284424 (+) True LOC110536556
XM_036934981.1 mRNA downstream 2829 15285042 ~ 15320246 (+) False spata13
XM_036934982.1 mRNA downstream 2829 15285042 ~ 15320246 (+) False spata13
XM_036934983.1 mRNA downstream 2829 15285042 ~ 15320246 (+) False spata13
XM_036934984.1 mRNA downstream 2829 15285042 ~ 15320246 (+) False spata13
TU1080168 other upstream 391726 14886614 ~ 14887282 (+) True G947301
TU1079869 other upstream 609252 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 694959 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 877364 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 878735 14399862 ~ 14400273 (+) True G946690
TU1080689 other downstream 2966 15285179 ~ 15299373 (+) True spata13
TU1080897 other downstream 155468 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 155468 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 305617 15587830 ~ 15589776 (+) True rnf6
TU1080943 other downstream 369761 15651974 ~ 15659462 (+) False atp8a2

Expression Profile