RNA id: XM_036934982.1


Basic Information

Item Value
RNA id XM_036934982.1
length 5128
RNA type mRNA
GC content 0.55
exon number 14
gene id spata13
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15285042 ~ 15320246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTGCGGTCAGACCACAAAATAATCAGTGCAAAACGTCCTTTGAGTAAATGTGGAACTCAAACTCCGCCCCCAAGCAATCACTGCAACAAGTGCACCGACGCCGTCCAGTAACGACAGCTCGAGCTCCAAAGAATCGACCAGCCTCTCACACTTGAGTACCAACGGATTTCTGAGTTTGTTTGAACCACTTTTATCATTTATCCACTTGTATACCCAACGGCAGATGCTTACTTGCCCGAAACCTTTTACAATTGAGTTTTCCGTTTTGTGAATATTTTAGAACTTCCCAGGTAGCAAACTCATGTTAGCCTACTGTTTCATGTTGCAAGGAGCGAAGTTAGCCATTTGTCTCGACATCTTGCAAGCCAGTTGAACCAGCAGCAGTAGCCTGCTACTTCCGACATGTTTTCGTGTGTAATCATCGATTGCAGGACCCAGCAGACCTTTGGACTtaagtagctagcttgctaactaacCATTTTAGTAAAGCGTTGACCGAGGATGGCTAACTAATCAACAAAAACAGCTGCTACTCTGTTGATGACAAATATCGGTGGCACAGAACAACACGACTATGAGAAGGGCATGGCAGAGCGATGGAACCCCGTCCACCAGCGAGGATTCTCTCTCCTACCGCCGTAGCTCCACATCCGACCCTGACCTTCGACCTCCAGCCCGACCCCGACCCCTCAGCGACTTTTACCCCTTGAAGGCTCATGTTTCGATGGCAGTGCCCCCGTCTCTGCTGTCTGGGTGTGATGCTCAGGTACAGCCCATGACCTGTGACTTTAACAGTGAAGAGAGTAGACTGAACGGGTTCAACACAGCCACCTGGTCCAGCCCTGTGATAGGCCACCCCTCCAGGATCATGAGGCTCTTCTCTACCCAGAAGAAGTGCACTGTTCCTGGGGACAGTCAGGGCTCCACCAGGCCCCTCTCTTTCCAGGGCCCTCCATCCAGTGCCGGGGTCCCGCAGGTTTGGCCAGGCCTGTCAGGGCTGACCGTCATGGGCTCCTTTAAGAAGCTACGCTCCTCAGTGCTCCAGGGTATCCAGAACCGAGGGACAGCCAATCAGGATGACGAGTACACCTCGGCAGCCATCCAGGGTGGAGATAATGTAATGGTCACAACCAATCAGAGCCCTAGACTTAGATGTGGGAAGGGCTATAGAGTCTCCAATGGGGTGTCTATTGGCCAACAGATGGCTGGGTTGAGCCCTTATGGTTCTGACaatgaagatgaggaggaggtagTAGATGAGGAAGATGGACTACAGAGAAACACATGGTTCTCCAGGAGTATCCGGAGAGCGTACGGGGCGGGGCGCATCTCACTGCTGGACGCTGGGGAGGGGAAACGAGGGGAGGGTCCAGGACTGggggttttaaccaatcagaggCCAGGTTCAGGCTCCGGTTCAGTGTCAGAGGTGAACCTCCATTTGGAGGAGAGTGTGAATGAAAACGTGAATGCGCTAAGCAGACTGAGCAAGAGTGCAGACAACCTACACCTCTTCAAGGGCCCTTTCAGACACAAagtcccctgtccctctcctcagaCAGACTCCCCAGGTGCCAATGGGGACCGCAGCATCCAGAGAACAGCCAGTGCCTCATCCGGTGACCTTAGGGACCGCAGCCAGAGCCCTGTTCGCTTTAGGAGTCCAGTGGGGGCCAAGGGCCACATGTTGAAGCTAATGGGCAGTATAACTGACCTGACCGTGAGACGCAGACCTAACCCGCCTCCTGTCACCTCTCCGGGCTCCCCCGTGACCCCCTTGTCACCCCTCAGCCGTCTCCATGACGACTACTCGCGCCGCACGCCCTGCCTGCCCGCCAGCGACCGCCAACGCCGGCCCTTGCCCGCCAGAACGAGAGCTGCAGCGGAGAGGAAGAGGAATAGCACTTCAGTACGACTGGAACACACGCCTACCATCCACCCCCAGCCCCAGTCTGAGTACCACCCAGCCCTGTTCCCCATAGAGCCCCAGGAGGGACCAGACCATGTCTTCGCTTTTCCCAGCATTAACCAGCCTTTCACTACAACCTCATTTTCCCTGAGTGCTCGTGCTCAGAGGAGCAGCCTGTGTGAGGGGGACAGGCctcaggagagacagggagacgggTGGAGAGCACGGTGTGATTCCGCTCCACACCCCCAGCGGGAGCCCTGTGGGAGTCGCAGCAAACACCAGCCAGACGTCAACGCAGAGGGAAAGACGGAACCAAAGCAGTGCGtatggaccagaccagaccaagaTCAGGAGGACCAGCAGGTAAGAGGACATCTCTGGGGTACGTTAGACGAACAGGGCAGAGAGGCACTATTGGGGGGTGAAGAGATGCCCCCTCCTTCAGCCACCAGTACCCCTTCTCTCACACCAACATGGCCCCCAGAGTCTCCCACTTCACCCATGTCACCGACGAAAATAGGTTCCACAGAAACGTCCACGTCCTTCATCCCCAGGCAAAGGGCGGGCCGATCGAGGCCTCGACCAATCTCTGACTACGCTCAGCTGGTAGCCAGGAAGTACGCCATCCCCGAGGAGGAGACGGAGCTACATCCTAAGGAGAGGACTACAAATGGAACTCTCTATCAAGACGGCAAAAGCAATGGAGGCTCGCAGGACAGTGACAGCACAGAGAACTACAATGTGAATGGAGATCTCCCGTGCCGGAGGAGACAGCCAATGTCTGTTATTGgaggagctgaggagagagaggaccgtCTGCCTTCTCCCCTGTCGCGCCCCCCTGTCCCGTCCCACCAAGTGCCCCCCTACAAAGCGGTGTCGGCCAGGTTCCGCCCCTCCACCTTCTCCCAGAGCACCCCCATCGGACTGGACCGCCTCGGACGACGCAAACTACACAGAGTCCTCAGtgttgaggACGCCGGCTCAGAGCGTTCTGCAGCGGTGGATGGTGACAGTGTGAGTGAAGAGGAGGGGAGCTTCGATGAGCTCAGCGACGTCACAACGTACCTGCAGCCTGGGGTGGAGCTGTCTGCTCTCAGCCAGtggataAGCCAGGGTCAAGCGGTGTATGCGGAGGCCCTGTGGGACCATGTGACGATGGAGGAGCAGGAGCTGGCGTTCAAGGCGGGGGATGTGATCCGGGTGCTGGAGGCCCCTCACAAGGACTGGTGGTGGGGCATGGGGGCAGACAGGGAGGCCTGGTTCCCCTCTAGCTTCGTCAGGGTTCGTGTGAACCAGGAGGAGGACTCAGGAGCAGAAAGTGTAGAGAGTTGTGCTCTGGACCAAGAGGACCCACACACTGACACCcgggacactcacacacacagcaccgAGCACCGTGAGCAGATGAGGACTAACGTGGTCAAAGAGATCATGAATACTGAACGCATCTACATCAAACATCTCCGGGACATCTGTGAGGGCTATATCCGCCAGTGTGGTAAACACCCGGGCATGTTCACTGAGCTGCAGCTAAAGACCATCTTCAGTAACATTGAGGACATCTACAAGTTCCAGAGACAGTTCCTTAAAGACCTGGAGAGGAAGTACAACACAGACCAGCCTCACCTCAGTGAGATAGGAGCCTGTTTCCTCTTACAGGGGGAGGGTTTTTCCATCTACTCTGAGTACTGTAACACCCACCCTGCAGCGTGTGGGGAGCTGCAGCGCCTCATGAAGCTGGGCAGGTACAAGCACTTCTTTGAGGCCTGCCGGCTGCTGCAGCAGATGATTGACATCTCCATCGCTGGCTTCCTGCTCACGCCCGTCCAGAAGATCTGCAAGTACCCCCTGCAGCTGGGAGAGCTGCTCAAATACACCCCCAAAGACCACAGTGACTATGGTGGAGTTCGTGACGCGTACGAGGCGATGAAGAATGTGGCGAGCCTGATCAATGAGGGGAAAAGGAGGCTGGAGAGTATTGACGCCATAGCTCACTGGCAGGTGGCCATCCTACGCTGGGAGGGAGCGGATGTTCTGGAGTGCAGCTCGGAGCTGATCCACTCTGGGGAACTCACCCGGATTGTCCGGCAGGGCAACAAGACGCAGCAGCGCAGCTTCTTCCTGTTCGACCACCAGCTGGTGTTCTGTAAGAAGGACGTACTGCGCCGCGACCTGCTGCACTACCGTGGTCGCCTGGACATGGACAACACATCGGTGCTGCAGATGCCCGATGGCAGGGACCCCGAGCTGGGCATCTTGCTGAGGAACGCCTTGCGGCTCCGGAACAGCTCTACCCTGGAGACCCtgtgttacctctgctgcaggaaACCCCAGGACAGACAGCGCTGGCTGCAGGCCTTcgccagggagagacagagagtacaggaggacCAGGAGATGGGAATGAAGATCAGTGAAACGCAGAGAAAACAAGCCATCTTCAATGCAAGAAGATCCAAACAAGGGAAAATGAAGACCATAGGCTACTCTGGCTCTGtcccgccccaccaccaccaaccccTGCATCCAATTCACCAGCGCCATGTTACTGTGCCAACCAGTGTGCCTCAGCAGCAGGTGTTCACATTGGCCGAGCCCAAGCGAAAGCCCGCCCACCTGTGGTACACCTTCACCCGACATGCCTTGTTCAGGAAGTGAGGATCTCGCCCTGAGGACTCAGAGAAAACATAATTATGGACCTACATATTTCAGCATAGTATCTGTGCATGTACTACTTTGTGTTTTAtcaatgtgtttgtgtgcctCTTAAAGTGTATGTATATTTTGTGGTCTTGTGTGCATTATGTCTGTTTGGTTTCTATTTGTGTCTATTCAAATCTGTGCCTGCAAATTGGGAGAGATTTCCCATAAGTGTTAATATGCTTACAGACGGACTCCCTCCATGTGCTGGTGTGGTAAAGATGCTGCTTTTTGTAGGTCTGAGGTTCCCAACCGCCCAACACAAACCTGTATTCATGTAATTATGACCATGATGTGCAGCACATTTTAGCTTTTCAATTAGGAGTTGCTACCTTGGTTTTAGTTCATTTCTCTGAGGCTAGTCCCTGTTGGAGTTGGACTGCTAGTGAAGGCACAAGTGGCTCTTCTGAGAGCTGAATGCCCAGAGGACAGTCTACACATGCATTTGCACATTCAGTAAACCTGTTAACACTGTTGTAAATAAACACTTACAAAAAGTACCAAATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080677 lncRNA upstream 38167 15246427 ~ 15246875 (+) True G947772
TU1080670 lncRNA upstream 43600 15241222 ~ 15241442 (+) True G947765
TU1080667 lncRNA upstream 50282 15234283 ~ 15234760 (+) True G947762
TU1080666 lncRNA upstream 52104 15232736 ~ 15232938 (+) True G947761
TU1080665 lncRNA upstream 52717 15232010 ~ 15232325 (+) True G947760
TU1080724 lncRNA downstream 17258 15337504 ~ 15337795 (+) True G947810
TU1080725 lncRNA downstream 17678 15337924 ~ 15338191 (+) True G947811
TU1080727 lncRNA downstream 19421 15339667 ~ 15339910 (+) True G947813
TU1080820 lncRNA downstream 33447 15353693 ~ 15353931 (+) False LOC110536557
TU1080821 lncRNA downstream 34006 15354252 ~ 15355812 (+) True LOC110536557
LOC110536556 mRNA upstream 618 15283295 ~ 15284424 (+) True LOC110536556
XM_021620273.2 mRNA upstream 2829 15278474 ~ 15282213 (+) False tagln3b
XM_036934980.1 mRNA upstream 2829 15279008 ~ 15282213 (+) True tagln3b
XM_021620272.2 mRNA upstream 7941 15269612 ~ 15277101 (+) True abhd10b
XR_005034577.1 mRNA upstream 268315 14997879 ~ 15016727 (+) True LOC118937318
XM_036934985.1 mRNA downstream 336 15320582 ~ 15337190 (+) True tmprss7
XM_036934987.1 mRNA downstream 22115 15342361 ~ 15367543 (+) False LOC110536557
XM_036936644.1 mRNA downstream 55414 15375660 ~ 15478222 (+) False LOC110535338
XM_021620280.2 mRNA downstream 158339 15478585 ~ 15479868 (+) True urad
XM_021620284.2 mRNA downstream 177215 15497461 ~ 15518161 (+) False lnx2a
TU1080168 other upstream 397760 14886614 ~ 14887282 (+) True G947301
TU1079869 other upstream 615286 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 700993 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 883398 14401254 ~ 14401644 (+) True G946692
TU1079453 other upstream 884769 14399862 ~ 14400273 (+) True G946690
TU1080897 other downstream 117435 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 117435 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 267584 15587830 ~ 15589776 (+) True rnf6
TU1080943 other downstream 331728 15651974 ~ 15659462 (+) False atp8a2
TU1081090 other downstream 427127 15747373 ~ 15793034 (+) True boc

Expression Profile