RNA id: XM_036934985.1


Basic Information

Item Value
RNA id XM_036934985.1
length 3774
RNA type mRNA
GC content 0.52
exon number 18
gene id tmprss7
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15320582 ~ 15337190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCACAGCAGCACGGTTTAACCAGTACACAGGGGTGCTGCTTTTTCCATCTTTATGTTTTACATCTTAGAGTGGAACAGTAGAAATGACCGATCTCACTCAGAAGCGAACGATCGGATGATATGAGAGGCGCGAAGTAATGTCCCTTTGTCGGTGTCATGGGGACAGAGCGCGAGCTGACGAGCGGAGATGACAGAGATGGCAATGCCGGAGACACTGCCAGTGTTAAGGATGTGACTGTGGAGGTGGCCACGGTTGACCACACCCTCCAGAGGCTGTGTACGAGGTACAACGGCCGCAGCAGAGCCAGACGTATGTCACGCATCAGGACCCAGCTGCCCAGGAAGAGCTGGGCACCTCTGTGGAACCTCCAGAACCTGACCATCCTCATCAccgtggttgtgtttgtggtcgTGGTCATCGTGTGGTCACTGCTCTGGGTCTTCATATTTCGCAGGGAGAGCAACAGCGGAGTGTATTTTGCCGGAATGTTCCGTGTTGCCAACGTAGATTTCATCCCCGAGTACCGCCAGGCAGAGTCCCATGAGTTTGTTTCCATGGCAAACAAGATACAGCACGTGGTGAGCAGTGTGTACAGAATGTCCTCAGTGTCCAAACTCTACAAACTCACCACCATATCAGACCTCAGTGATAACAAGGGTGGTCTGCTGGTGCATTTCTGGATGGTGTTTGTGGTGCCGAGACTGAAGACCCCAGCCGTGTGCGAGGAGTGTGTAGGAGCTATCCTCAGAGACTCAGTCCTCACCAGCCTGAGGAACAGGTCTTCTGTAGGGTACCTACTGGGCCTGCCCGTAGACATAGATTCCATACTCATtaatgCTGCTCTACGATCAGATTATACATCAATTGCAGCGGGCTCTCAGTGTGTGGACAAGCTGTATGCCAGCCTGCCAGGCTCCAGTGTTCCCCTAAACGTCTACTCGTCATGGGGAGGTCTGAGCTGCTACGTCAAGCTGACGTCTACCCCTGGCTCTCTGATCCGCCTCACCATTACCTCCCTGCACATTGAGCCCAGCGACTGTGTCAGTGATGCCCTCACCATGTACGACGCCCTGCTGCCCATGAGGGGGCGTACTCTCTACAGGGTGTGTGAGCCCGTGTCCCAGTCCCTGTCTCTGGTCTCCACGTCCAACGTCATGCTGCTGTCCCTCAGGATGACCCAGGGCAACAAGCACTTCAGAGGACACTTCCAGGCCATCGCTGAGGAACtgACTTACGTAGAGATCCAGGCAGAGCCAGATTTCTCTGGTCAGATCACCAGTCCCTTCTACCCCAGCCTAATGCCTCCTCAGTGCTCCTGCATATGGAGGTTTCAGACCCCCCACATTGCTCTGGGAGTGGCTCTGAAGTTCCAGAATTATGTGCTGAAGCTGAAGGACATAGCGGCCTGTGAGCACGGCTGGTGGAAGGTCAAGGAGATCATATACTGTGGAAGCTACATAGGCCACACCACAGTGTTCCGTATCCCTGACCACACCGCTGAGGTGGAGTTTCGCAGCAGCTCCCGGAGCTCTGACCAACCCTTCCAGGCCGAATCTAGTAGCTTCAACATCAGCCAACCGTGTGCAGAGGGCCATTTCCTGTGCTCCACAGGGCTGTGTGTGGAGAAGACCCAACGCTGTGACGGCCTGGACGACTGTCAGGACGAGAGTGATGAGGTCTTCTGCGCAAGGCCTAGTAAGAACTGTGGAGGCTCCAGTCCTCTTCACCCACTGTACATCTGCAacggagagagagactgcaaTGACGGCAGGGACGAAACCAACTGCACTCTGGAGACGAGCTGCTCTGACCTCAGGTACAGGTGTAACAGTGGGTCCTGCATCCTGAAGAAGAACGCCAGGTGTGATGGAGTCACCGACTGCTCAGACCACAGTGACGAGAGGGACTGTGCCTGTGGCCGGTCCTCTACTGTGAAGAAAGTAGACTCGACCTCGGGTCTTCGGGTGGTCGGTGGAATCAATGCCCTGGAGGGGGAGTGGCCATGGCAGGTCAGCTTGCACTTCTCTGGCTACCTGTACTGTGgagcctctgtcctctcttctgatTGGCTCATCTCAGCAGCACACTGCTTCAGCAGGGACAGGCTGTCAGACCCACGCCAGTGGAGTGCCCATCTGGGTATGCTGTACCAGGGTAGTGCCAGGCACGTGGCAGAGATCCAGCGCATCGTTGTGCACGAGTACTACAACAGGCTGACCTTTGACTATGACATCGCCCTGCTGCAGCTGAGGAGCCCCTGGCCTCCCTCCCTCAGCTTCCTCATCCAGCCCGTGTGTCTGCCGGCCACCTCACAGACCCTCACACATGCACACCGCTGCTGGGTCACAGGATGGGGGTACCGCTCTgaggaggATAAGACCCTTCCCACAGTGTTACAGAAGGCAGAGGTTTCTGTCCTGGATCAGAGTGAGTGTAAGAGGAGGTACGGCCCCGTCTCCCCCCGCATGCTGTGTGCCGGAGTCCCCTCTGGACAGCGGGACGCCTGCAGGGGGGACTCAGGGGGTCCTCTGTCGTGCTGGGCCCCAGGCTCAGAGGGGCGATGGTTCCTCACAGGAATCGTGAGTTGGGGGGCGGGGTGCGGCAGACCCAACCTACCAGGCGTCTACACCCGTGTCAACAAGTTCACCACCTGGATCCAGAACCACATTGTTACCTGAGTCAATTTCAACACCCTTTATTTCATAGTCCTATTTCAACTGGTATTTACTACGAAATTACAATGTGTACTTTCTGGTGTCTACTTCTATGAATCCCATATAAAATGTAATTACTATCTATACCATCTATATCATCTTCGAAAATACAAGGTAATGAGTGGACAGTATGTAAAGCTGTTACAGGAATGAAGATCAGGAGAGATTGACACAAGTTAGACGCAGCACTGGTCCCCTTCAGCCAATCAACCCTAACCACAAACATACAGTGTAAAAAAATAGATATGTGTTTGGTTGACCCAAATGTTgcattagatctagctgaaagCCACACCCCTAATAAGCCAAGCCTCCTGAAAATAGCATAAAAAATACCCAGCTGCTAAATCAACCCAGCATGAGAGTATAAAATACCAAATTGATGGTTAAATTAACCCATGTTTGAGTAATCCCAACAACCCAACTTGTGTTATTCACGCAACCCAGCTGTCTGGGTCAAAGTAACCCAGCGTGTGTTCTGTCCAACCCAGCGCCTGGTTACCaaattgggttgtttttaaccTAGACATTTTTAGAACCTccaaatctctctgtctctgtatgtctagCTCTATACTGGCTCTAGCCTAGGCTGCCTGCACTATCATTTAGGTACTATGTGCATTCCTGGTAATACACTTGAGTCCCCTGTGGAACTGCTCGTACGTAAAGCATCCTCTATTCAGGCTGTGAAGGCGTCATTTTCCTCCTTAACTAcctttaactgcctgttcaggggtagaacgacagatttgtatcttgtcagctcggggttttgaacttgcaaccttccggttactagtccaacgatctaatcactagtctaccctgccgcccctttaaTGACGAGAAGGCAGAGAAAACAGGGGAAATATGCATACTTTCGTCATGAAACAATTTTCCACCACTTTCCACCATTTTAGCATTTTCTGACAATTTAGGATGTTGCACATCCATGGCTGAAACTGCTGCCTGGGCTACACTGGCTCagctatatactgtactctatgtaACAGTAACTGATATGTTGTTGAGTCATCACTTTAACAATAAACATT

Function

GO: NA

KEGG:

id description
K09638 TMPRSS7; transmembrane protease serine 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080677 lncRNA upstream 73707 15246427 ~ 15246875 (+) True G947772
TU1080670 lncRNA upstream 79140 15241222 ~ 15241442 (+) True G947765
TU1080667 lncRNA upstream 85822 15234283 ~ 15234760 (+) True G947762
TU1080666 lncRNA upstream 87644 15232736 ~ 15232938 (+) True G947761
TU1080665 lncRNA upstream 88257 15232010 ~ 15232325 (+) True G947760
TU1080724 lncRNA downstream 314 15337504 ~ 15337795 (+) True G947810
TU1080725 lncRNA downstream 734 15337924 ~ 15338191 (+) True G947811
TU1080727 lncRNA downstream 2477 15339667 ~ 15339910 (+) True G947813
TU1080820 lncRNA downstream 16503 15353693 ~ 15353931 (+) False LOC110536557
TU1080821 lncRNA downstream 17062 15354252 ~ 15355812 (+) True LOC110536557
XM_036934981.1 mRNA upstream 336 15285042 ~ 15320246 (+) False spata13
XM_036934982.1 mRNA upstream 336 15285042 ~ 15320246 (+) False spata13
XM_036934983.1 mRNA upstream 336 15285042 ~ 15320246 (+) False spata13
XM_036934984.1 mRNA upstream 336 15285042 ~ 15320246 (+) False spata13
LOC110536556 mRNA upstream 36158 15283295 ~ 15284424 (+) True LOC110536556
XM_036934987.1 mRNA downstream 5171 15342361 ~ 15367543 (+) False LOC110536557
XM_036936644.1 mRNA downstream 38470 15375660 ~ 15478222 (+) False LOC110535338
XM_021620280.2 mRNA downstream 141395 15478585 ~ 15479868 (+) True urad
XM_021620284.2 mRNA downstream 160271 15497461 ~ 15518161 (+) False lnx2a
XM_021620283.2 mRNA downstream 160272 15497462 ~ 15518161 (+) True lnx2a
TU1080689 other upstream 21209 15285179 ~ 15299373 (+) True spata13
TU1080168 other upstream 433300 14886614 ~ 14887282 (+) True G947301
TU1079869 other upstream 650826 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 736533 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 918938 14401254 ~ 14401644 (+) True G946692
TU1080897 other downstream 100491 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 100491 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 250640 15587830 ~ 15589776 (+) True rnf6
TU1080943 other downstream 314784 15651974 ~ 15659462 (+) False atp8a2
TU1081090 other downstream 410183 15747373 ~ 15793034 (+) True boc

Expression Profile