RNA id: TU1080821


Basic Information

Item Value
RNA id TU1080821
length 218
lncRNA type sense_over
GC content 0.57
exon number 2
gene id LOC110536557
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15342361 ~ 15367543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCAGGTCATGTGGTGCGTCTGGTCGTCCTCACCCTGCACGGAGCCACACCCGGAAGCTGCTCCTCCCACAAACTGTCTGCCTACGACTTCCTGTTGCCACTACAGAACAAGATCATCGCCAGGTGGTGtggtctcccagtgtctggcTCATCTCCTGTAATGAAGCTGACGTCGTCTGGTAACGTGATGCTGGTCACCTTCTCCTtcagcagacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080820 lncRNA upstream 321 15353693 ~ 15353931 (+) False LOC110536557
TU1080727 lncRNA upstream 14342 15339667 ~ 15339910 (+) True G947813
TU1080725 lncRNA upstream 16061 15337924 ~ 15338191 (+) True G947811
TU1080724 lncRNA upstream 16457 15337504 ~ 15337795 (+) True G947810
TU1080677 lncRNA upstream 107377 15246427 ~ 15246875 (+) True G947772
TU1080826 lncRNA downstream 9475 15365287 ~ 15365605 (+) True G947893
TU1080829 lncRNA downstream 12467 15368279 ~ 15368648 (+) True G947896
TU1080831 lncRNA downstream 13108 15368920 ~ 15369398 (+) True G947898
TU1080891 lncRNA downstream 72118 15427930 ~ 15428384 (+) True G947951
TU1080892 lncRNA downstream 74775 15430587 ~ 15430880 (+) True G947952
XM_036934985.1 mRNA upstream 17062 15320582 ~ 15337190 (+) True tmprss7
XM_036934981.1 mRNA upstream 34006 15285042 ~ 15320246 (+) False spata13
XM_036936644.1 mRNA downstream 19848 15375660 ~ 15478222 (+) False LOC110535338
XM_021620280.2 mRNA downstream 122773 15478585 ~ 15479868 (+) True urad
XM_021620284.2 mRNA downstream 141649 15497461 ~ 15518161 (+) False lnx2a
XM_021620283.2 mRNA downstream 141650 15497462 ~ 15518161 (+) True lnx2a
XM_036934991.1 mRNA downstream 174363 15530175 ~ 15534688 (+) False usp12a
TU1080689 other upstream 54879 15285179 ~ 15299373 (+) True spata13
TU1080168 other upstream 466970 14886614 ~ 14887282 (+) True G947301
TU1079869 other upstream 684496 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 770203 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 952608 14401254 ~ 14401644 (+) True G946692
TU1080897 other downstream 81869 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other downstream 81869 15437681 ~ 15439862 (+) True LOC110535338
TU1080953 other downstream 232018 15587830 ~ 15589776 (+) True rnf6
TU1080943 other downstream 296162 15651974 ~ 15659462 (+) False atp8a2
TU1081090 other downstream 391561 15747373 ~ 15793034 (+) True boc