RNA id: TU1080898


Basic Information

Item Value
RNA id TU1080898
length 2148
RNA type TUCP
GC content 0.49
exon number 2
gene id LOC110535338
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15375660 ~ 15478222 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGCCCACACCGATCTGACTGGATAAAGGGCGACCAATGACGGCCAAACACATTCAGTCATTGGGCCCCTGCAGCTGTCCATTGTCCTGAGAGAATTCCAAACCATCCAGAGGGTCTATTCAATAGGGTTGAATGTTGCACATAGAACTGTGATGTATAGAATAGATCTTCTCATGTGACTAGAAGTCTTGGTATGATCTATATAATACATTTCTAAAACGCTTTGAGTGTTTCACCCTTCTGAATAGATCCTTGCTTCTGAGTGCAACAGCCACCACCCACCCCCCTTACCAATTCTCTATCCTTCTCCCTGATGTACACTCCTTCACTATCCATTATGAATTCAAAGGCATTGGATTGGTATAAGCATGGGTTGGAGTTTCCATCATCTCTCTTATGCCAATCCATTATTTTTAAAGCCATGAGAGGGTGTGAATGAGAGCACACTGCAGGGGGAAAAACCCAGGGGACCTCCGGAAGGGGTCAAAGGTGAAAGGTGACTCCTGGTCATCGCTGCTCGGTGTCTCCAGCATGTTTTGTGTCACATGATcttaaaaggtcaaataaaaaaaagacaTTTTCTTAAAATTATTCAAAACCCCTTCCTACAATCCACTTCACCCCCGttccttgcccccccccccaaattggTCCACAGAAAAACATTTGTGTTGAGGCAGAAAGACTGTCCCTTCCATGTCCCATCATGCatcactgcacaacagcagagtAAAGTGAGAAGAACCAGCTAGAAAGAATCATCACAAAAAGCATAACGTATTCTCAAATGAAGAGGTCACCAGGGACCCttcaggagagggagaaagacggagggagggacccttcaggagagggagaaagatggagggagggacccTTCAGGGGAGGGAAAAATACGGCGGGAGGGACCCttcaggagagggagaaagacggagggagggacccttcaggggagggagaaagatggagggagggacccttcaggagagggagaaagagggacccttcaggggagggagaaagacagagggagggacccttcaggagagggagaaagagggacccTTCAGGGGAGAGAaaaatagggagggagggacccttcaggggagagagaaagagggagggaggcagcaaAGAAAATAATTGAGGCAGAACTGGCTCCATTCTCTAGTTATGCCCAATCCATGGGTTCTACCCCAGAGCTGACAAAACAGTTCCATCCCCCGAGTTCATAATTTGTGTCACAACATTTTCCACAATAGTGTCCATCATTGAGCAATAAAGGAGGGGCTGCCTGGCCTGCCTGACTCTGCTCTaacaaacacaacacacccctCAATGGTCTGTTTCAACAGAGTCCCCATCCCAACCCACAGCCTACTCCAAAACTCAGTGGGTTGTCCTTTCTGAGTGAGAACCGACAACTAAGGCTGACTTGGACCGGCCCATTTCATGAATGGGTTCTTTGACCACCCCCTTAGAAAGCATCCAGTGGTCTGTCCCGTCTCTTAATGTGTTGGTATGAAGGGGTGTGGTCTCCAGCAGAGACACGCAGTAGAAAGCCTGATTTATATTCAGTTCTCAGTCTGTGTCGGTGTGTGTCTGACTTCAGCTGTCTGGAGCTGCATCTCGTAGGCCACTCACACATTCATTAAAAGTCAAATAGTGAATCCTTCACAGAAAAAAAAGCAGGAAAAAGTTCAATACCACGTGGTTGGTTTATTTTTTTAGTATCCGTTTTGTTCCCCAgttctaaaataaaataatgcaGTGTTCATCATCCTTGTTGTCATCGTCACAGCTTCCGTTTCTGTCCACTATTTGTAGTGGCAGCTGCTGGGTTTTTaggaaaacaacaaaaaaatgatccTGGTTGCTAAGACAGTGTATGTGACTGATTCAGCAAGTCCCGCCCCCTCTGATGATGTCATCACTATGCGCCTGGTCCTCCGATGTAGTGCAATAATGTGCTTTCAGGTTCAGGGTTCAGGCAGTCCCACCCCGCTGCCTGTGTGTGGGGGGCGGCAGGGGCGCTACAGGGGGCCAGTGGCAGCCGCCTGCTGCAACTCCTGGAAGGTACTGTCGAAGCAGCGCTTCAGGTCTGAGTAGGTCACCACCAGAACACTCTTCTCATCACGAGATACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080900 lncRNA upstream 63 15436326 ~ 15437618 (+) True G947956
TU1080892 lncRNA upstream 6801 15430587 ~ 15430880 (+) True G947952
TU1080891 lncRNA upstream 9297 15427930 ~ 15428384 (+) True G947951
TU1080831 lncRNA upstream 68283 15368920 ~ 15369398 (+) True G947898
TU1080829 lncRNA upstream 69033 15368279 ~ 15368648 (+) True G947896
TU1080935 lncRNA downstream 50426 15490288 ~ 15490511 (+) True G947984
TU1080931 lncRNA downstream 51245 15491107 ~ 15491630 (+) True G947980
TU1080970 lncRNA downstream 78630 15518492 ~ 15518714 (+) True G947999
TU1080971 lncRNA downstream 80602 15520464 ~ 15520678 (+) True G948000
TU1080979 lncRNA downstream 86575 15526437 ~ 15529942 (+) False G948005
XM_036934987.1 mRNA upstream 70138 15342361 ~ 15367543 (+) False LOC110536557
XM_036934985.1 mRNA upstream 100491 15320582 ~ 15337190 (+) True tmprss7
XM_036934982.1 mRNA upstream 117435 15285042 ~ 15320246 (+) False spata13
XM_021620280.2 mRNA downstream 38723 15478585 ~ 15479868 (+) True urad
XM_021620284.2 mRNA downstream 57599 15497461 ~ 15518161 (+) False lnx2a
XM_021620283.2 mRNA downstream 57600 15497462 ~ 15518161 (+) True lnx2a
XM_036934991.1 mRNA downstream 90313 15530175 ~ 15534688 (+) False usp12a
XM_021620285.2 mRNA downstream 90532 15530394 ~ 15534688 (+) True usp12a
TU1080689 other upstream 138308 15285179 ~ 15299373 (+) True spata13
TU1080168 other upstream 550399 14886614 ~ 14887282 (+) True G947301
TU1079869 other upstream 767925 14665726 ~ 14669756 (+) False LOC110535322
TU1079817 other upstream 853632 14582543 ~ 14584049 (+) True G946999
TU1079455 other upstream 1036037 14401254 ~ 14401644 (+) True G946692
TU1080953 other downstream 147968 15587830 ~ 15589776 (+) True rnf6
TU1080943 other downstream 212112 15651974 ~ 15659462 (+) False atp8a2
TU1081090 other downstream 307511 15747373 ~ 15793034 (+) True boc
TU1081573 other downstream 614203 16054065 ~ 16054638 (+) True G948524
TU1081554 other downstream 633554 16073416 ~ 16083282 (+) False sh3kbp1

Expression Profile