RNA id: XM_021620284.2


Basic Information

Item Value
RNA id XM_021620284.2
length 3631
RNA type mRNA
GC content 0.56
exon number 12
gene id lnx2a
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15497461 ~ 15518161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCCGTGGGCGGGTTCTTCACGGCGAAAGTCACAGGGGCGTTTTATGTGCGGCTGCTACGGCTCTGCTTGTTGCGGTGAATGTGTGATTGAGTTCGGTTAATTGTCCCCTCTCGGGGCCGGAGTTCTCGGCACCAAGGAGAAGCCGGAATAGGGTGATGTCTGATTGGCCACTGGGGGGCGGCTGTCCTCTCTGTCACCAGCTCACCCTCTGAGGCTTATGGGATAGGACGCCCCCCACCCAACCCCTTTGTAACCTCCCGACCTGTAACCCCAGTGACGATTGTGCCGAAGGCCGTGCCTGGCAATTAGAGCCCTGGTCCTGACATGGGCAGCCCCGGCTGTGAGGTGAGTCCGGCAGGGCCTGTGGAGCCCGTGCTGGAGGCCTTGTGTCCAGAGTGTGGTCAGATCCACCGGGCCTGGGAGAACCACCTCTATAACTACCGCCTGGAGGTGGACGATGACCTGGTGTGTCACATCTGTCTGCAGCCCCTGGTCCAGCCCCTGGACACACCCTGCGGACACACCTTCTGTGCCCTCTGCCTCCGCAGCTTCCTCCAGGAACGGGACTTCTGCCCGCTGGACCGGGAGCGGCTACATCTGCAGGTGTGTAGGCGGAGCAGCATCCTGGTACACAAGCTGCTTGACaagctgtctgtgtcctgtccccTGGCCCTGGCCTGCAGCCTCAGCATGCCCCGCTGTGACCTGGAGGCTCACCTCAAACACAGgtGTCCGGGGACGCAGTGTCAGCAGACCAGTTTAGAGGGACCACCATGTGATCCCGGGGAGGAGGGAGCCATGGTGACCAGCCCCTTCAAGTCCCCACGCTTCCTCCAGATGGAGACAGACCTGCAGGAGGAGAGCTCCTCCTTGCCTCCTGGTGTCACCTCCACCGCCGGAAGCAGCATCCCCATGTGGACCGACGAGCCTGGATTGGACAACCCCGCCTTCGAGGAGAGCAATGAGGAGGACAgtgtggtaGGGTTGGAGTGTGTGGTGCCCAGGGTAAAGCGACCCCTCAGTAACCCGTGCATCCACCTCCTCCGCACCGCCAGCTCTGCCTCCTCTGGGTGGGACAGCCCAGAGTCACCGCCCCTCTCTGCAGAAGAGGGTAGTGTGAAGCTGCCGTCCCTTCCAGAGGGTGAGATCACCACCATCGAGGTCCACCGCTCTAACCCCTATGTTGAACTGGGCATCAGCATCGTCGGGGGCAACGAAACGCCTCTCATCAACGTGGTGATCCAGGAAGTGTACCGTGATGGGGTCATTGCTCGAGATGGCAGGCTTCTGGCCGGGGACCAGATACTACAGGTCAACAGTGTAGACATCAGCAATGTGGGCCATACCTTTGCTCGCTCCACGTTGGCACGCCCCTGTGCCACACTGCAGCTCACTGTCCTAAGGGAGCGCCGCTGTGTCTCTCGcccacctccctccaccaccccctCGGTGCCCCACGCCCCCTGTTCCACCCCAGAGGGTACTCCGTCCAGCCCTGCCAGCCTGAGGATCACCCTGCAGAAGCGGGACTCGTCAGAGCAGCTGGGCATCAAGCTGGTGCGAAGGACTGATGAGGAGGGGGTGTTTGTGTTAGATCTGCTAGACGGTGGCCTGGCTGCCAAGGACGGGAGGCTGTGTAGTAACGACCGCGTGCTGGCGGTCAACGAACAGGACCTACGCCACGGCACGCCTGAACAGGCTGCTCAGATCATACAGGCCAGCGGCGAAAGAGTCTATCTGCTGATTGGCCGTCCCAGCAAGCCTACCCTTCCCCCTCCATCAAGCTCCACCTCCAGCAGAGATCTGTACTGCCATGACCACTTCctccccaaccaccaccaccatcaccacagcTTCTCCCCCAACCCCAGCACCGTGCCCACCTGCGCCCACCTGGCCCGCTCCAGCACCCACAGAgacctGGCCCAGTGTGTGACCTGTAAGGAGAAACACATCACTGTGAAGAAGGAGACTCATGAGTCTCTGGGTATGACCGTGGCCGGGGGGCGGGGCAGCAAGAGTGGCGAGCTGCCCATCTTTGTGACCAGCGTCCAACCACATGGCTGCCTGTCACGGGTTGGACGAATCAAACAAGGTGACATCCTCCTGAGTATCAACGACCAGGACCTGACCTACCTGAGCCACAGCGAGGCGGTTGGCACCTTGAAGGCCAGTGCGGCGTCACCCTCCGTCCAGCTGAGGGCGCTGGAGGTCAGCATGGTGGAGGAGCCGGACCAGGACATGAGCCCCGAGGACCAGCTGCTgcccacacaccaccacacacacgacTCAGACTTCGACTCCTCCTGGTCCCCTTCCTGGGTCCTGTGGCTCGGCCTGCCCAGCTTCCTTCACAGTAGCCATGAGATTGTTCTGCGTAGAAGTCACCCTGGGAGCTGGGGCTTCAGCATCGTTGGGGGATACGAGGAAAACCACAGCAACCAGGCATTCTTCATCAAGACCATTGTCCTTGGAACGCCTGCATACTATGATGGCCGCCTCAAGTGTGGGGACATGATAGTGGCGGTTAACGGGCTGTCTACAGCTGGTATGAGCCACTCAGCCCTGGTACCCATGCTGAAGGAGCAGCGTAGCAGAGTGGCTCTCACCGTGGTCTCCTGGCCTGGCAGCTTGGCATAGAACCGGGTCAAACTGCACTGGACAGCGTCATGCCATGCTGATATTACTCTAGACTCTATCTAACCAGGACCAAATCATGCTAGACTGCATCGAAACCAAGCTATGGTGCCAAATCATGCCATACTGAAATTGCTCTGGATCTAACCTACTGTAACCTGGGACAAATCACATGGACTTCATCAAACCAGGCTGGACTGTGCCAGCCCCACACCACACTGCACTCACACATACTGATGTgttcatacagatgtaggatcttaatttgatcacccagATCCAGAACtatcctgcaatgcaggacatttcaaacttgtagtgtatgaGGTTTAAAAAGGTCCACATTCAAATTCCAGACTTAATTTTTctttacgaaaaatgtatcaaaacgctacaaaaatgtccattcttTATAATCAACATTTCCTGATGTAGCAAACTGGCTGAAATGAAGAAGCTATATCTGTATGGTCATGTTACCGGTCTTCActcccacacagagagagtgggacTGTACGTTAGAGGACAGTATATCATCTCTGTTTCTCTTCACTGGACTCCATTAGTAGATCCCAGGGGCATATTCACGTGGCCGTAACGTTACAGAACCTTTCAGATAGAAATTCCCTGCATAGAACAGGATTCTCTGCCATGTAGAATAATGAAATAGATCAGCTTTAGGCCATGTATTTCTGTCATTATAAAATGCTTCTAGGGTTATGTTCAGGAGGAGAAATAATTTTGAAACAAGTTCAGGTAACACCCCTTtccaaaaaatataaaaaacattcaCCCAGTCGCTCCTACTGAATACAACCCAACTGAATAAACCCAGGCCTTACCAAATACCTGCCACGCCCTGGAGGCCCGACCCGCCCCCCTGGACACAGCCTTAGGCCTCATCACCGTGACGACCCAGCCGTCAGCTTGCTGGGGTTTTAtacgtgtgtgaatgtgtgttctGCGGTTTAATAAAGACTTCCCACAGAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080931 lncRNA upstream 5831 15491107 ~ 15491630 (+) True G947980
TU1080935 lncRNA upstream 6950 15490288 ~ 15490511 (+) True G947984
TU1080900 lncRNA upstream 59843 15436326 ~ 15437618 (+) True G947956
TU1080892 lncRNA upstream 66581 15430587 ~ 15430880 (+) True G947952
TU1080891 lncRNA upstream 69077 15427930 ~ 15428384 (+) True G947951
TU1080970 lncRNA downstream 331 15518492 ~ 15518714 (+) True G947999
TU1080971 lncRNA downstream 2303 15520464 ~ 15520678 (+) True G948000
TU1080979 lncRNA downstream 8276 15526437 ~ 15529942 (+) False G948005
TU1080980 lncRNA downstream 8276 15526437 ~ 15528524 (+) False G948005
TU1080981 lncRNA downstream 8276 15526437 ~ 15529942 (+) False G948005
XM_021620280.2 mRNA upstream 17593 15478585 ~ 15479868 (+) True urad
XM_036936644.1 mRNA upstream 19239 15375660 ~ 15478222 (+) False LOC110535338
XM_036934987.1 mRNA upstream 129918 15342361 ~ 15367543 (+) False LOC110536557
XM_036934985.1 mRNA upstream 160271 15320582 ~ 15337190 (+) True tmprss7
XM_036934983.1 mRNA upstream 177215 15285042 ~ 15320246 (+) False spata13
XM_036934991.1 mRNA downstream 12014 15530175 ~ 15534688 (+) False usp12a
XM_021620285.2 mRNA downstream 12233 15530394 ~ 15534688 (+) True usp12a
XM_021620287.2 mRNA downstream 21517 15539678 ~ 15547074 (+) True LOC110535348
XM_036934995.1 mRNA downstream 69123 15587284 ~ 15593900 (+) False rnf6
XM_036934994.1 mRNA downstream 69130 15587291 ~ 15593900 (+) False rnf6
TU1080897 other upstream 57599 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other upstream 57599 15437681 ~ 15439862 (+) True LOC110535338
TU1080689 other upstream 198088 15285179 ~ 15299373 (+) True spata13
TU1080168 other upstream 610179 14886614 ~ 14887282 (+) True G947301
TU1079869 other upstream 827705 14665726 ~ 14669756 (+) False LOC110535322
TU1080953 other downstream 69669 15587830 ~ 15589776 (+) True rnf6
TU1080943 other downstream 133813 15651974 ~ 15659462 (+) False atp8a2
TU1081090 other downstream 229212 15747373 ~ 15793034 (+) True boc
TU1081573 other downstream 535904 16054065 ~ 16054638 (+) True G948524
TU1081554 other downstream 555255 16073416 ~ 16083282 (+) False sh3kbp1

Expression Profile