RNA id: TU1080953


Basic Information

Item Value
RNA id TU1080953
length 305
RNA type TUCP
GC content 0.60
exon number 3
gene id rnf6
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15587284 ~ 15593900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAGGGAAGCAAACGCGTCGATATTACAGCTGCTGTGTCAGCGGATTCCATGGTGATGGACCCTCCTAGCGGGCGAGACGAGCGGCGGCGTCAGGCAGAGCGTCTTCGAAGGGAGGAGGCGTACTATCACTTCATCAACGAGCTGAGTGAGGAAGAGTACCGCCTTATGAGAGATAGCAACCTACTGGGCACACCTGGTGAGGTGACAGCGGAGGAGCTACGGCAGCGCCTGGACGGGGCAAAGGAGCGTGTATCATCTCAGCCCCGCCCTGAACCACTCCCACAGAACACTGAGgccggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080990 lncRNA upstream 49387 15538165 ~ 15538443 (+) True G948011
TU1080979 lncRNA upstream 57888 15526437 ~ 15529942 (+) False G948005
TU1080981 lncRNA upstream 57888 15526437 ~ 15529942 (+) False G948005
TU1080980 lncRNA upstream 59306 15526437 ~ 15528524 (+) False G948005
TU1080976 lncRNA upstream 59306 15526905 ~ 15528524 (+) True G948005
TU1080938 lncRNA downstream 69235 15659011 ~ 15660363 (+) False atp8a2
TU1080942 lncRNA downstream 69235 15659011 ~ 15660363 (+) False atp8a2
TU1080944 lncRNA downstream 69235 15659011 ~ 15660363 (+) False atp8a2
TU1080945 lncRNA downstream 69235 15659011 ~ 15660363 (+) False atp8a2
TU1080946 lncRNA downstream 69235 15659011 ~ 15660363 (+) False atp8a2
XM_021620287.2 mRNA upstream 40756 15539678 ~ 15547074 (+) True LOC110535348
XM_036934991.1 mRNA upstream 53142 15530175 ~ 15534688 (+) False usp12a
XM_021620285.2 mRNA upstream 53142 15530394 ~ 15534688 (+) True usp12a
XM_021620284.2 mRNA upstream 69669 15497461 ~ 15518161 (+) False lnx2a
XM_021620283.2 mRNA upstream 69669 15497462 ~ 15518161 (+) True lnx2a
XM_036935005.1 mRNA downstream 4640 15594416 ~ 15658441 (+) False atp8a2
XM_036935001.1 mRNA downstream 4640 15594416 ~ 15658937 (+) False atp8a2
XM_036935002.1 mRNA downstream 4640 15594416 ~ 15658937 (+) False atp8a2
XM_036935003.1 mRNA downstream 4640 15594416 ~ 15658937 (+) False atp8a2
XM_036935004.1 mRNA downstream 4640 15594416 ~ 15658937 (+) False atp8a2
TU1080897 other upstream 147968 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other upstream 147968 15437681 ~ 15439862 (+) True LOC110535338
TU1080689 other upstream 288457 15285179 ~ 15299373 (+) True spata13
TU1080168 other upstream 700548 14886614 ~ 14887282 (+) True G947301
TU1079869 other upstream 918074 14665726 ~ 14669756 (+) False LOC110535322
TU1080943 other downstream 62198 15651974 ~ 15659462 (+) False atp8a2
TU1081090 other downstream 157597 15747373 ~ 15793034 (+) True boc
TU1081573 other downstream 464289 16054065 ~ 16054638 (+) True G948524
TU1081554 other downstream 483640 16073416 ~ 16083282 (+) False sh3kbp1
TU1081677 other downstream 620153 16209929 ~ 16210840 (+) False ccl20b

Expression Profile