RNA id: XM_036935005.1


Basic Information

Item Value
RNA id XM_036935005.1
length 3919
RNA type mRNA
GC content 0.54
exon number 37
gene id atp8a2
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15594416 ~ 15660363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGAGGATCCTACTTATGCAACGGATCAGGCTTTTTGTGATCTTGGCCGAGGACGCGCGCACGCACAAACACGTCTCACCCCTATGCACGCTCTCGTCACTGCTGAGCCGACCCATCGCCGTCCCTCGTCCAACGATCGAACATGATTCATCTCCCAGCGAACGCAGCCTTGTCCCGGGCCCGCATTCCCCCGCTTTGTACGTGAGCCACCGGCATGCCAGCGCCCCGGCCGCCCTCTTCCAGGCCAATACAGACCCCCGGCTCAAGATCAGGATGTACTTCAACCGGCGATCGAAGAAGATCCACAGCGAGGGAGAGCAGTTAGTGTTGACTCTCATTAGGCAGGAGAAGTCTCCTGACCACCTGGACCCAGAGCTGGGCGTCGGCGTGGCCGCCATGCGCTCCCGACTCGCTAACAGGTTTGAAAAAACCTCGCCTCTCTCCCATCAATCGAACGGTGCAGGAACCTCTTGTTCATCCGCCGGCTACCGCAAGGCAGATGATGAGATGTCCGGGACTACTTCGCAGGCAGATCCCATAGATGCTACGGCACGGACGATTCTGCTAAACCAACCTCAGAACACCAAGTTCTGTGACAACCATGTCAGtaccacCAAGTACGGGGTGTTTACCTTCCTGCCTCGTTTCCTGTACGAGCAGATCCGCCGCGCTGCCAACGCCTTCTTCCTCTTCATCGCCCTAATGCAGCAAATCCCTGATGTGTCTCCTACGGGTCGTTACACCACCCTGGTACCACTCATCTTCATCCTCACTGTGGCCGGGATCAAAGAGATCATAGAGGACTATCAAAGACACAAGGCAGACAACACAGTCAACAATAAAAAGACCACAGTTCTGAGGAATGGAGCCTGGCAGACCGTCATATGGAAACAGGTGGCAGTAGGAGACATAGTGAAGGTGACCAATGGGCAGCATCTTCCAGCTGACATGGTCATAGTGTCCTCCAGTGAGCCTCAGGCCATGTGTTACACCGAGACCTCCAACCTGGACGGAGAAACCAACCTGAAGATCAGACAGggtctCACTCACACAGCTGGTCTCCAGTCTCTGGAGGAGCTGATGGGTCTCTCTGGCCGTCTGGAGTGTGAAGAGCCCAACAGACACCTGTACGACTTCACTGGGACCCTACGGCTGGACAACCAAAAtgcgGTTCCTCTTGGTCCTGACCAGGTGCTACTGAGAGGTGCCCAGCTCAGAAACACACAATGGGTTGTAGGAATTATAGTCTACACTGGACATGACTCCAAACTGATGCAGAACTCGACCAAGGCCCCCCTGAAGCGTTCTAACGTGGAGCGGGTGACCAACGTCCAGATCCTGGTGCTGTTCTGCATCCTCCTGGTGATGGCGCTAGTGAGCTCTATAGGAGCCTCCATCTGGAACAAACAACACACTGAGGAGGCCTGCTGGTACCTGTCACGTGCCGgggACATCTCCACTAACTTTTGGTATAACCTGCTGACCTTCATCATCCTCTACAACAACCTCATCCCCATCAGCCTGCTGGTCACTCTGGAGGTGGTCAAGTTCACACAGGCCCTCTTCATCAACTGGGATGAGGAGATGTACTACTCTGAGACAGACACACCCGCCATGGCTCGAACGTCCAATCTCAACGAAGAACTGGGCCAGGTGAAGTATCTGTTTTCTGATAAGACAGGAACTCTCACCTGTAACGTCATGCACTTTAAGAAGTGTACCATCGCTGGGATCACATACGGCCACTTCCCTGACCTGGATGTTGATCGTTCCATGGAGGACTTCAGTCCCCTGCCGTCCAGCAGTCTTAACTCCACAGAGTTTGATGACCCCGCTCTCATCCAGAACATTGAGAAGAACCATccaacCTCTGCGCAAATCTGTGAGTTTCTGACGATGATGGCGGTGTGTCACACAGTggtcccagagagagaggaggaccagCTTATCTACCAGGCCTCCTCGCCAGATGAAGGAGCTCTGGTAAAAGGAGCCAAAGGTCTGGGCTTTGTTTTCACAGCAAGGACTCCTGGCTCCGTTATCATGGAAGCTagggggaaggagaagagCTTTGAGTTGCTGAATGTGCTGGAGTTTTCAAGTAACCGTAAGCGCATGTCTGTAGTGGTCCGAACCCCCGATGGGAAACTGCGTCTGTACTGCAAGGGAGCAGATAATGTGATCTTTGAGCGTCTCACTGATGCGTCTCAGTACAAAGAGCTGACCATCGCACACCTGGAACAGTTCGCCACCGAGGGTCTGCGGACTCTGTGTTTTGCCTATGTTGATCTGGAGGAGGGGGTATACCAGGAGTGGCTGAAGGAGTACACCCGTATAAGCACTATCATTAAAGACCGGGCCCAGAAACTAGAGGACTGCTACGAACTACTGGAGAAGgacCTGTTGTTGTTGGGGGCCACAGCTATAGAGGACCGTCTCCAGGCAGGGGTCCCTGAGACCATCGCTACTCTGATGAAGGCCGACATCAAGATCTGGGTCCTCACTGGAGACAAACAGGAGACCGCCATCAACATAGGTTACTCATGTCGTCTAGTTTCCCATGGCATGTCCCTCATCATCGTCAACGAGGATTCACTGGATGCTACACGTGCCACCCTGACAGCCCACTGTACATCTCTGGGTGACTCTCTGGGGAAGGAGAATGAGTTGGCTCTGATCATTGATGGACAGACCCTAAAGTACGCCCTGTCCTTCGAGCTCCGCCAAGCCTTCCTAGACCTCGCCCTGTCCTGCAAGGCCGTCATCTGCTGCCGGGTGTCTCCCCTCCAGAAGTCTGAGATAGTGGACATGGTGAAGAAGCATGTAAAGGCCATCACTCTGGCCATAGGAGACGGGGCCAATGACGTGGGCATGATCCAGACTGCCCATGTGGGGGTTGGCATCAGTGGCAACGAGGGCATGCAGGCCACCAACTCCTCTGACTACTCCATAGCACAGTTTTCCTACCTAGAGAAGCTGTTGCTGGTCCATGGGGCGTGGAGTTATAACCGTGTCACTAAGTGTATTCTCTACTGTTTCTATAAGAATGTGGTGCTCTACATTATAGAGCTGTGGTTTGCCTTTGTGAACGGCTTCTCTGGACAGATCCTGTTTGAACGCTGGTGTATCGGCCTCTACAACGTGatcttCACAGCGCTGCCTCCCTTCACTCTGGGGATCTTTGACCGGCCATGCAGTCAGCAGAACATGCTACGCTTCCCCCAGCTATACAGGATCACCCAGAATGCTGAGGGCTTCAAcaccaaggtgtttTGGGGTCACTGTATAAATGCTCTGATCCATTCCATTATTCTCTTCTGGTTTCCACTCAAAGTACTAGAACATGACAGTCCTTTCAACAACGGGCATGGTACTGACTACCTGTTTGTGGGGAACATGGTGTACACGtatgtGGTAGTAACAGTGTGTTTAAAAGCTGGTATGGAAACCACTGCGTGGACCAGGTTCTCCCACTTGGCAGTGTGGGGCAGTATGATTCTCTGGATGCTGTTCTTCACTGTCTACTCAGCTTTCTGGCCGTCCATCCCCATCGCTCCTGACATGCAGGGCCAGGCTAGCAGAGTGATGCAGTGCTGGCACTTCTGGCTGGGGCTGGTCCTGGTGCCAGCAGCCTGTCTACTCAAAGACTTTGCCTGGAACGCGGGTCGTCGCACTGTGAAGAAGTCTCTTCTGGAAGAGGTTCAGGAGCTGGAGGCCAGGGCTGTAGACCCGGGGGCTGCCGTGCTCCGAGACGCCAGCGGGCGCAGGGCCAAAGCCAACCCTGAGGTCCCCTAGCCCCAGAGCTCAGGGCACAGACACAGTCTGAACGAGCGTGCCCACCTGTTGACCCGGGTCTTTAGGAAAACACCCTCCAACGTGGGCCGCAAAAACTCTGTGCAGCAGAGCAACGTGTCTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080990 lncRNA upstream 55973 15538165 ~ 15538443 (+) True G948011
TU1080981 lncRNA upstream 64474 15526437 ~ 15529942 (+) False G948005
TU1080980 lncRNA upstream 65892 15526437 ~ 15528524 (+) False G948005
TU1080938 lncRNA downstream 570 15659011 ~ 15660363 (+) False atp8a2
TU1080942 lncRNA downstream 570 15659011 ~ 15660363 (+) False atp8a2
TU1080944 lncRNA downstream 570 15659011 ~ 15660363 (+) False atp8a2
TU1080945 lncRNA downstream 570 15659011 ~ 15660363 (+) False atp8a2
TU1080946 lncRNA downstream 570 15659011 ~ 15660363 (+) False atp8a2
XM_036934995.1 mRNA upstream 516 15587284 ~ 15593900 (+) False rnf6
XM_036934994.1 mRNA upstream 516 15587291 ~ 15593900 (+) False rnf6
XM_036934998.1 mRNA upstream 516 15587682 ~ 15593900 (+) False rnf6
XM_021620293.2 mRNA upstream 516 15587712 ~ 15593900 (+) False rnf6
XM_036934997.1 mRNA upstream 516 15587915 ~ 15593900 (+) False rnf6
XM_021620299.2 mRNA downstream 29819 15688260 ~ 15694754 (+) False spice1
XM_021620297.2 mRNA downstream 29820 15688261 ~ 15695114 (+) False spice1
XM_021620298.2 mRNA downstream 29820 15688261 ~ 15695114 (+) False spice1
XR_002475244.2 mRNA downstream 29820 15688261 ~ 15695114 (+) True spice1
XM_036935014.1 mRNA downstream 88709 15747150 ~ 15800515 (+) False boc
TU1080953 other upstream 4640 15587830 ~ 15589776 (+) True rnf6
TU1080897 other upstream 154554 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other upstream 154554 15437681 ~ 15439862 (+) True LOC110535338
TU1080689 other upstream 295043 15285179 ~ 15299373 (+) True spata13
TU1080168 other upstream 707134 14886614 ~ 14887282 (+) True G947301
TU1081090 other downstream 88932 15747373 ~ 15793034 (+) True boc
TU1081573 other downstream 395624 16054065 ~ 16054638 (+) True G948524
TU1081554 other downstream 414975 16073416 ~ 16083282 (+) False sh3kbp1
TU1081677 other downstream 551488 16209929 ~ 16210840 (+) False ccl20b
TU1081665 other downstream 664909 16323350 ~ 16326407 (+) True G948587

Expression Profile