RNA id: XR_002475244.2


Basic Information

Item Value
RNA id XR_002475244.2
length 2915
RNA type mRNA
GC content 0.56
exon number 17
gene id spice1
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15688260 ~ 15695114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtggtgtCGTTTTATTGGTAACTAGGAGGTTACACATTTCACCCAGAAGCGCGCAACAACTGTTGAACACAGCGCCACTCCACAACGGAAAGAAAACAATGAATACAGCAAACTAACTAAACATTTTTCTACAGTTAATAACCTAGTTTGCCAGCAAGCTACAACTGCCTAGTTTAAGTGTAGCTTGCGTATGACTTTCATTGAAAAAACTCTTGGCAAACAACATAGTTAGGtaggctaacgttagccagctaatCAGACATTTTCTAGCTAGTTATCGTTTTCTTCCCAGATGTCGTTTACGAGGGTGGGCCGCTTACAGCACGGTCAAGGAAAACGACCTGCTGTGCGTCCCAAGAAGGCCAATGCCCCGAAGAGAGAGTGGGTGAGCACCGTCCATGACCTCTCTGTACACAAGGCTTCACCGGAGGAGCTGaaTCGTCGTCATGAGATGCACCGGTCCCAGAACCGAGTGGTGGCCCAgtgggagctgagagagagagctctgagaCACAGGAGGAAGAAGGACCTCCCTGGTAGCCCAGCTCCGCTAGACCGCGCCAGCCTCAACATCATCAGAGAGGTGTTCTCAGATCAGTTTCAACTGCAGGACGTTCTGGCCCGGTCAGACAGAGCTATGGCTGTGGTCAAAGACTTGTTTGGCGACGCGCCTCGCAGGCAGACCGGGTTCCCCAGTGTTACCATGGCTCCAGACTGTGGCTCTGACTCAGACCTGCCTGTCCTGCAGAAACCAGAGGCCCCAACACAGCTCTCCCTCCTCAGCCAGTCCATGATGGACCCACAGgcTCTGAATGAGCTGGAGGACTCTGTTGAAGACCATAGTGATGAAGAAACTGGCCATTCTGCCTCTGTCAATTTCAACTCCAACATGGATACCAGTTACAAGGTGTATACCCGGAAAGTGAAAGCCAAGCCTTGTACTAGAGGAGGGAAGCAGCAAAGACCCCAGTGTAACTCCAACCTCCAGGGGGCAGGAGGAGACAGCCCCCCTCAGACTCCCAGTGCCTCAGGGGGAACCCAAGTACAAGCAGctCTGAATGCCACAGTTAAAGTCCAGCGGTTGGGGTCCAgacagccccaaccccagcctgaACCTGGGGAGCATTTCACCCTGGTCACTCAGGTCCTGAACCCAGACCCTCCTCTCACCCGCTCAGGCAGGAAGAGCCGGTCCTCGAAAGCCAGTAGGGGGCGCAGTACTGAGTCAGGTCTGGATGGCTCTACCCTCAGCTCTCTGAGTGGGAACCAGTCCAGCCTGGGGCTGCTGCAGGGCCTGCTGGGTCAGGTGGAGACAGAGCTGGATGGCCTAGGGCCAGAGGAGCCTCCCAGAGCCCCAGGagcaggggaaggagaggggacgaCGGGGCCAAAGCACAGCACACATGGCCTCACAGGCTTCTCTGTGGCTCTGGTGTCTACACTGGGCCGCCTGGCTAGACTACTCAGACAGagagaggaggagactcagagggagggaaaggagaggaggcgGCTGGAGGTGGAGGTGAAGGAGCAGAGAGGAATGATAGACGCCCTCACCGCAGAgaccctgaccctgagagagGAGAGCGCCGCCCTGCAGGCAGGTTTGCAGCAGCGAGCGTGTGATCTGGAACAGAGGCTGGACACAGTGGTGCTGGTTCTGGGGGGATTGGGGGTACTAGGAGGAGACGGGGACTATGAGCCCcaagagactggcagcatagctacagGCAGTGAGTGGGAACCGTCCTATGATGCAGACGCTCCTGTACCCTCCTATGAACAGAATCAGACAGGTCTCACTCTCAACCCTGCTGTGCTGCTCTCTCCACCACGTCAGAGAGACAATCGGCCACACGGTCACACTTCAGCTGTTCATTCCCTGGCTCTTCACcacgttccctctctccctgtgacCCGGGGCTCCTGTGACGACCTCCAGACCTTCAGCTCCGCCCCCTCTCTCTTCAGCCTGCCCCGCCCTGCCCCTACACCCCCTCCAGCCGCCACCCCAGACCCTCTCCTCTGCGATCCGTCCCAGGGTGCCATGCTGTCTCAGATTGCCGAGCTGACCCGTCAGAACGCCCTCATACGGGATCAGCTGGGGCAGTTCCACCCCGCTACTCCTCCCTCCGGGTCAGAGATTTGTGAAGGTCAGAGTTCAGGCAGGGGGTTTGTCTCCAGCAGCACAGGGAGACTGACTCCCCAACAGGGCATGGAGAAGAGAGGCTTCGTTCCCAGCAGTACAGGCAGAACAACACCCCAgcgtgagacagggagagagagggggacatggTCCTGTGGTGGAGAGCAGCAAACACAGCAGTCTGTGGTTCGTGAGAGCCCAGGCTGTGAGAGCAGTGTGGAACAGCGTCTCCTAGAGCTCAACAGGCAGAGTGCAGCAGCCAGGAGCAGACTGCTGGAGCTTATAGAACAACAGAGACAGAGCTCCTCCTCAGCCAGAGTATCCCCTTCTGTCTCCCCCATACCTCCACTGTCAGCAGGCCTGAGCCCAGAGTCATCCATGCTGCTGCCTGAACAGGACCCCTCCCCCCTGGGCAGCGGAGGTAGTAGACGGTGATGTGGAGGAAGGGATCAGAGGTCAGGGGAATGATGGTCATCTTGACTGAAGAGgtcctgtgtgtttcaggtctgcTGGTGGGGTCTCTCCACAAAGCCTTGGAGGACAGTCCAGAGGCAGCAGGActccgGTGGACAAGCTGAAAGGAGAAGGCTGGTTTGCGTTGTCTACACATGTAAGATGAACAAGTTAAGAACTGAATACAGAAACTCCCTGCAACTTTTGTAACTTTTAGTAGAGGTCACTTTAGACTTAAAATGTTGTTTCTTTACCCTGTTTTTACCTATGCAATTTTCTTATGGTTGTGAATTAAAACTTTTGATAACTGTG

Function

GO: NA

KEGG:

id description
K16490 SPICE1; spindle and centriole-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1080942 lncRNA upstream 27898 15659011 ~ 15660363 (+) False atp8a2
TU1081034 lncRNA downstream 76 15695190 ~ 15699638 (+) True G948049
TU1081083 lncRNA downstream 33576 15728690 ~ 15728894 (+) True G948092
TU1081109 lncRNA downstream 83871 15778985 ~ 15781343 (+) True G948115
TU1081110 lncRNA downstream 84519 15779633 ~ 15780297 (+) True G948116
TU1081340 lncRNA downstream 132184 15827298 ~ 15828220 (+) True G948318
XM_036935001.1 mRNA upstream 29324 15594416 ~ 15658937 (+) False atp8a2
XM_036935002.1 mRNA upstream 29324 15594416 ~ 15658937 (+) False atp8a2
XM_036935003.1 mRNA upstream 29324 15594416 ~ 15658937 (+) False atp8a2
XM_036935004.1 mRNA upstream 29324 15594416 ~ 15658937 (+) False atp8a2
XM_036935006.1 mRNA upstream 29325 15594596 ~ 15658936 (+) False atp8a2
XM_036935014.1 mRNA downstream 52036 15747150 ~ 15800515 (+) False boc
XM_036935015.1 mRNA downstream 122261 15817375 ~ 15839784 (+) True atp6v1ab
XM_036935017.1 mRNA downstream 146734 15841848 ~ 15857765 (+) False gramd1c
XM_036935018.1 mRNA downstream 146737 15841851 ~ 15857765 (+) True gramd1c
XM_021620314.2 mRNA downstream 163405 15858519 ~ 15865400 (+) False zdhhc23b
TU1080943 other upstream 28799 15651974 ~ 15659462 (+) False atp8a2
TU1080953 other upstream 98485 15587830 ~ 15589776 (+) True rnf6
TU1080897 other upstream 248399 15437681 ~ 15439862 (+) False LOC110535338
TU1080898 other upstream 248399 15437681 ~ 15439862 (+) True LOC110535338
TU1080689 other upstream 388888 15285179 ~ 15299373 (+) True spata13
TU1081090 other downstream 52259 15747373 ~ 15793034 (+) True boc
TU1081573 other downstream 358951 16054065 ~ 16054638 (+) True G948524
TU1081554 other downstream 378302 16073416 ~ 16083282 (+) False sh3kbp1
TU1081677 other downstream 514815 16209929 ~ 16210840 (+) False ccl20b
TU1081665 other downstream 628236 16323350 ~ 16326407 (+) True G948587

Expression Profile