RNA id: XM_036935018.1


Basic Information

Item Value
RNA id XM_036935018.1
length 3728
RNA type mRNA
GC content 0.47
exon number 19
gene id gramd1c
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 15841848 ~ 15857765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGGCAGATACAAGAAATCATTCTCAAAAAAAATACGAGCTTGACACACCTCCAGAACAAGATCTTAGAGggtggaacagaacagagaatgATGGCTATTTTTAGAACCATTAGACAGCCATCAGTACGCAAATGGTATCCACGACTTCACAAACCTTCATTCATCCCAGACTCACAACTCGGTGCAGAAGATACATATATTCGGTCGTTTCCAGGCAGCGGAACAGTGGGTCTGATGGACCAGGTTTCTCGGTCAGGGGTTGGCAGTGACGTCACAGACGAGACCGCCTCCATGGGGGAGTACAGGTGGAGCTCTGAGGAACATGAGATGTCCGACCCTCAGGGCCAGTGTCTGGCCGCCCCCCAAGCCCTGCCTGCCCCCACCTACAAACAGAGAGTTGAGGAGTTCAAGAAGCTGTTCAGAGAACTGCCTGAGTCAGAGAGACTCATCATGGACTATACCTGTGCCCTCCAGAGAGACATCCTACTGCAGGGACGCCTCTACCTGTCAGAGAACTGGCTCTGTTTCTATAGCAATGTGTTTCGGGGGACAAAGATAGCCTTGACTCTGAGGGACATCAAGGCCATGTACAGAGGGAAGACAGCACGGCTGATCCCCAACGCCATACAGATCTGCACAGACTCagagaagTTGTTCTTCACTTCCTTCTCAGCCAGAGAGAAGAGTTACCAGGGAGTGTTCCGGATGTGGCAGAACACACTGATGGACAAGccACTGAGTAGTTTGGCGCTGTGGCAGATGGTCAAGCAGCACTATGGCAATGACCTGGGCCTGAGGATTATCGAGAGAGAAAGTCTACAGACATCAGCAGAATCAACCACGCAGAAACACACCAGCATGACCGTGAGGCCTGGTGGAGAGGACTCTGGGAGGCCGTCTACTCTGCGCCTCCAGCCGGGGGATCAGGGCTCCTGTGAGCCCACTGCGCCCCAGGGAGAGGACCTACCCTCACCCCTCGGACAGAGCTCCATCAACTCAGGAAACACGGATGATGCTTGCAGCACCTCGTCTAGGTGCACTCCTGACCCGTCCCTGGACCTCTCTGCCCCAGAGCGAGTCTCCAAGCGCTCTGAGCTCTCTCTGGACCTCAACTCTAACATGGACCGCTTCTCTGAACAGAGCGCAGAGGAGAGTGCAGAGGAGGaggagagggggagtgtcTCCCAGCAGCATGGCAGGCTGTATGTGAACACGGTCTTCAACATCAGTGCAGAAAAGATGTTTGAACTGCTCTTTACCGAATCTCACTTCATACGAAGATTCATGAACGCCAGGAAGATCACCAATGCCATCCTTACACGCTGGCAGAGTGACGCGTCTGGCTCCATGAAGAGGAGTCTCAActacaccatcaccatcaccaaccCTCTGGTGGGCAAGTTCTCCACCGCCACGGAGAACCAGATCCTGTACAAGGAGTTCAGGGAAGGTCAGTACTATCTCGTCGACTCGGAGGTCTACACACACGACGTCCCGTACCACGACTACTTCTACACTCAGAACCGCTACTGTATCATCCGCCATTCCAAACGCAAATGTCGACTCAGGGTGTACACTGATGTGAAGTATAAGAAGCAGCCGTGGGGGCTGGTCAAGTCCTTCATTACCAAGAACTCCTGGAGTGGCCTGGAGGACTACTTCAGACACCTGGAATCTGAGCTGATGGAAGAGGAGGCGGAGCTGAACCAGGGATGCGGAGACCCCGGTAAGATGATTGGCGGGTTGCATCATTGGCGGAGGAGGACGTTCAGTCGGACACTACAGGACCACCTGAAGCCCAGCAAGCAATACGAGCCTGACCTAGACCCTCACAGAGAGGGCAAGACGGATCCCATAGATATGAAGGGTCCACCTCGATGGAACATCTCTACCATCATAGCTGGGATGAGCATCATTCTGCTTATCCTAACAGTACTGAACCTGGGGCTGTTCTTTAAGCTGTGGGCCATGGAGGATGTGGCCAACCGCATGTACCTGAGCACCAAGCACCACCTCCGGGAGAGGACCGAGAGCAGTTTTGCAGCTGACTTCTTTCCCGAACCGGCCCCAACATACAGGACCAGAGAGGAGACTTTGCTGCTGAAAACAGTGCTGCAGGACTCTATCAAGCTATTGGAGCAGCTCCGCAGTTCTCTGTCGCTGCTTCAGCAGAAATTTGTAACCAACAGAACAGCAATTCTGCAGTGACACCGTCACACCTGGCGACCTCACTACGCCCTCTGAAGCCTGGGGTTGTAAAGGCTACAAGGGCCTCTGAGGACTCTCTCGTAACCAGGGGTGTTGCTAAAGGGACAACTCATGCACAGACTTGTTACTAAGAGCAACAATGGTTCAAGTCCCAGGGCCTTTAATAGTGTGGTACCAGGTAGATGGatgttttaatttttatttaactaggcaagtcagtcaagaacaaattcttattaaagTTCAACTGTCGGCACTGCGCTGTGGAGGAAGAAAATGGTTCCCAACCATCAGCAACACTGGGAGATGACTGGTGGATTGGGGTTTATGTGGGGTTCTGTTTTCAGTTTGGTAGTTCTTTATTCTTCCTTAATGTTGGTGCTGGGTTTATTGTGATTAAGTTAGTTCTACTGCATGCCTCACTGTACTGCGTACCCCTTTGATTGACAAGCCAATCACAGAAGATGTGAGCCAATGGTGTGATGAGTGCAGCAGATCAGAACCAATGTTTTGATAGAAATGAATGCCAATGTAAGGAATCATTAAATATTTTTACTTTTTGCACAGTGCCTTGTGTACTTTTTATGGTTTTTAGATtcatttagatattttttttcaATTAGAAGGCTTTTAGAaagtaatttgtatttatttggatGCCAATGGGTTTCTGCTATtgtgaaaatgtgaaataagtatgcagttgagaaaaaaaagaaatgttaGCCTTGGATGGTTTGTGATTTTTCAGCTGGTTTGTAGATGTACAGCAGACCTCAATATCAGGGTTGTGTTCAGAAGGGTGCAATGTTCTGAACGCTGTAGATATAAATGCCTTTTATAGACCTGTCATGAAACCTTATTCTACATGAGTTTGTTCTACATAATATATTTGTATCTGTAACATTGCTCCCCACTGAACGTGACCCAGGTGAACTTTCTCAGGAGCATTTGGTTAGAACCAAAACATCCCGATGTGAATAATACTGATTACATTTTGTTAATCTTGATAGCTGTCCCATGTAGGCTAGGCTAGAGGGTTAGTGGCTGTTATGTAATTAATATTCCATCCGCATGCCACACCCATTCAAGAAGCCACAGCACTAAAACGTTGCACTGCTGTTGTGTACGTCCACTATAAGAATGTGACCACAAGTTTAGTCTGGACTCTCTGAGTTGAATCCACACTAGTGCCTTGTTAACTTGGTTTGAATTGTTATTATTGTAAATTACAATTTACAATGACGTGTATATGCTGCACAAAATTAACATTCAActcatttctgtgtgtgtggcgGAACAGCTTCAGACTGTATGTAACACCCAtccttattttttaaataaaagcacAGGAATCTTCCTACCGTTGTTACATGGAATCAATGTGAACCATTGGATGTGaatagtttacacacacacatttgtataATTTGTTTTATATTTGTTGGCTATTTTGTACAGTTGTTAGACAAAGATGTAATGTATTGTTGCTTTGAATAAAGAAACACTTTCCAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1081340 lncRNA upstream 13631 15827298 ~ 15828220 (+) True G948318
TU1081109 lncRNA upstream 60508 15778985 ~ 15781343 (+) True G948115
TU1081110 lncRNA upstream 61554 15779633 ~ 15780297 (+) True G948116
TU1081083 lncRNA upstream 112957 15728690 ~ 15728894 (+) True G948092
TU1081034 lncRNA upstream 142213 15695190 ~ 15699638 (+) True G948049
TU1081371 lncRNA downstream 36679 15894444 ~ 15894934 (+) True G948347
TU1081457 lncRNA downstream 62320 15920085 ~ 15920430 (+) True G948410
TU1081460 lncRNA downstream 64794 15922559 ~ 15922830 (+) True G948413
TU1081473 lncRNA downstream 75427 15933192 ~ 15933423 (+) True G948426
TU1081495 lncRNA downstream 94085 15951850 ~ 15952070 (+) True G948448
XM_036935015.1 mRNA upstream 2067 15817375 ~ 15839784 (+) True atp6v1ab
XM_036935014.1 mRNA upstream 41336 15747150 ~ 15800515 (+) False boc
XM_021620297.2 mRNA upstream 146737 15688261 ~ 15695114 (+) False spice1
XM_021620314.2 mRNA downstream 754 15858519 ~ 15865400 (+) False zdhhc23b
XM_021620315.2 mRNA downstream 754 15858519 ~ 15865400 (+) True zdhhc23b
XM_021620324.2 mRNA downstream 215550 16073315 ~ 16097197 (+) False sh3kbp1
XM_021620321.2 mRNA downstream 215562 16073327 ~ 16098499 (+) False sh3kbp1
XM_021620322.2 mRNA downstream 215562 16073327 ~ 16098499 (+) False sh3kbp1
TU1081090 other upstream 48817 15747373 ~ 15793034 (+) True boc
TU1080943 other upstream 182389 15651974 ~ 15659462 (+) False atp8a2
TU1080953 other upstream 252075 15587830 ~ 15589776 (+) True rnf6
TU1080897 other upstream 401989 15437681 ~ 15439862 (+) False LOC110535338
TU1081573 other downstream 196300 16054065 ~ 16054638 (+) True G948524
TU1081554 other downstream 215651 16073416 ~ 16083282 (+) False sh3kbp1
TU1081677 other downstream 352164 16209929 ~ 16210840 (+) False ccl20b
TU1081665 other downstream 465585 16323350 ~ 16326407 (+) True G948587
TU1081649 other downstream 475292 16333057 ~ 16335292 (+) True LOC110535372

Expression Profile