RNA id: XM_021620321.2


Basic Information

Item Value
RNA id XM_021620321.2
length 2805
RNA type mRNA
GC content 0.51
exon number 19
gene id sh3kbp1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16073315 ~ 16098499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTATCTGGAACGCACCTAATATTTTGGGGGAAGATTCGTGATTTCTCGCGATATATGTGGTACAGAAGCGGTACGCAGTTCAATGCAGGGCAGAGCGCACAGAGCGTTCTGTACATCAGCGCTTTTCCGCTTTCTGGCTGCTCTCTGGTGTGACCGGGGAGAAAGCGGAAGGAATATGGTTCCATCTCGCGTTCCTCCCGCTGCAGCGCGTTCATAACGGAGCTCTCGTGCGGGAGGCTGGGGGTCGTACTCGGTCCACCAAATAACAAGATTCCTGCATTTCCAGTTAAACCCGGTAGTCCCTGCAGCAGGAGCGGAGCGTCACGGGAACAGATGGtagaGGCAGTGGTAGAGTTTGACTACGAGGCTCAACAGGAGGATGAGTTGAGTCTGCATGTTGGTGACATCATCGTCAAGGTAACGAAGGATGACGGAGGATGGTGGGAAGGAGAGATAGACGGACGGAGGGGGCTGTTCCCAGACAACTTTGTCAGGGAGATAAAGAAGGATgtgaagagagaggtggggcctaagtctgatctctccaatgGCAGTGCAAGTCCTGTGTCTGAGCCCAGCCTACGACCAGCCAGGAAAGATCAGATCCGCCAAAGGAGGTGTAAGGCGTCATTTAGCTATGTTCCCCAGAATGAGGACGAGTTAGAGCTGAAGATAGGAGATGTCATCAACATACTgggggagGTGGAGGAGGGCTGGTGGGAGGGCAGTCTGAATGGTAAGACAGGGATGTTTCCCTCCAACTTCACCAGAGAGCTGGAGGACACGCCCCCTTCACTAGACACATCCACTAGGTCATCACAGGAGGAGCTACGCAGCAGCAGGACCAGTAAAGACAGTCCAGGCAGTGAGAGTGATGGCGGAGAGAGTCGCTCTGACAGCGGAGAGATTCAACCCAAAAAGGTTCGAGGGTTCGGGTTCGGTGACATCTTTAAAGACCAGCCCATCAGACTGAGACCTGCATCTGAAGATatggacacagagggagagaagGCACAGGTTAGCAAATCACCCTCTGTTGCCCCGGAAACTATGAAGGCGGAACCTGAGGGCAAGGTGAAAGGCCGTGAGCTGTGTAAAGTCATCTTCCCGTACGACGCCCAGAACGAAGACGAGCTGTCAATCAAAGAGGGAGAGATCATCTCCATCAttaacaggGACTGTGCTGACGCGGGGTGGTGGATGGGGGAGGtaggggggagaaagggagtcTTCCCTGATAACTTTGTCAAGCTGCTAATTCCTGATGTAGAGAAAGAGAGACCAAAGAAGCCGCCTCCCCCCAGTGCCCCCTCAGCTAAACACACCACAGAGAAAAGATCGGAAGTCAGAAAGGTACCCCCGGAGCGCCCCGAGCACCTGCCTCATAGACCACCTGATGACAACAAaggtGAGGAGGTGAAGGTTGGAGAGATCCCTAAGCCCACCCTCCCATCCAAATCTCCAAAGAAGCCCCACCCACCAAAGACAAgctcctcccacctccctccccgaCGCCCTGACAGACCTGAGAGACCTCCAACTGTaccGTGCGAGAGCCCTAAGTTTGAGGGTGGGGCTGTGACTCCAGATCCTGCCTTTGACAGGTCAAAAGATATTGatgTGGTTGACTTGGACTCTGTAGTCTTGTCTACAGAAAAACTCAACCATCCGACCGCAATGAGACCAAGAGTCCTCGACCGCAGACCACGCTCCCAGATCATCAGCACAtCTTCTCTGTCCAGTATTGACTTGCTGAACTTTcctgtggtggaggaggagaagagtgagaaggacagagagaaggaggaggagcaggactcCTTATGTCCAAGACCAGTAGATGTCTCTAAGAGGAAAGCACTTCCCACCATCACTGTACCTGACAGTAAGTGTCTGCTGCCCCCCAAGCCTGCGGTCCTCCCCCTACTTTCCACAGGAAGCCTGGCCCTCCACTCAACAAGCCCACCCCCTTCAACTGTAAACCACACCTCTTCCGGGTTAAGCCCCTCCCCCGAGCGTAGGCCGACACCCACCCTAGAGGAGCTGAGAGGACAGCTTAGAGAGCTGAGAGCCTCCGTAGAACTGCTGAAGAGCCAACAcagGCAGGAGATGAAGCAGTTGTCTAGTGAcctggaagaggagaagaggatccGCATTACTCTACagataGAGGTGGAGCAGATTAAGAAGAGTTTAGCTAAATGACCCTTCACCCCTCCGCTGCGCACACTGATGACATCACCACACACTGCAGCCAGAGTTTAACATCATCCCGAGGCAGGGTTCAGCCGAACTAGTTTGtgccaaaaaacaacaacaaaaatgacagaCGATCCCAATCCCTCACCCCGTCTGTTAGTTTGTTTGTGTTGAAAAGgcttgtttatttgtttgtttactgCAATCTGATTGGAGTGCTCTGCATCAGGGGAGTGGCCTCAAGTTCTTACCTGTCTGTCACCACGGTACTCAAACACCTGGAATACCTATTCCTcctctttgtgtctgtgtgtgtcaaatTACAAGGTTTCCATTGCAACCCCTCACTGTGGCCTTCCTTCCGGTTTTagactccttccctcctcccttcccttctttctttcttcccttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcagatGACAAAGAGAAAGTGTCTTGTTTTTTTCTTGGTCATTGCTCTCCAGGAAAGTAAAATAGACTTTTATATTCCAGTGTTGTAAAGATGAAGAGTATGGATGTGTGCCGATTTTAATAAAAAAACATCAACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1081541 lncRNA upstream 68407 16004710 ~ 16004920 (+) True G948494
TU1081533 lncRNA upstream 87548 15984758 ~ 15985779 (+) True G948486
TU1081529 lncRNA upstream 92600 15980520 ~ 15980727 (+) True G948482
TU1081495 lncRNA upstream 121257 15951850 ~ 15952070 (+) True G948448
TU1081473 lncRNA upstream 139904 15933192 ~ 15933423 (+) True G948426
TU1081599 lncRNA downstream 38248 16136747 ~ 16173715 (+) False G948545
TU1081604 lncRNA downstream 38248 16136747 ~ 16141454 (+) False G948545
TU1081602 lncRNA downstream 59072 16157571 ~ 16171306 (+) True G948545
TU1081616 lncRNA downstream 75793 16174292 ~ 16174572 (+) True G948554
TU1081678 lncRNA downstream 111892 16210391 ~ 16210840 (+) True ccl20b
XM_021620314.2 mRNA upstream 207927 15858519 ~ 15865400 (+) False zdhhc23b
XM_021620315.2 mRNA upstream 207927 15858519 ~ 15865400 (+) True zdhhc23b
XM_036935017.1 mRNA upstream 215562 15841848 ~ 15857765 (+) False gramd1c
XM_036935018.1 mRNA upstream 215562 15841851 ~ 15857765 (+) True gramd1c
XM_036935015.1 mRNA upstream 233543 15817375 ~ 15839784 (+) True atp6v1ab
XM_036935019.1 mRNA downstream 106 16098605 ~ 16205054 (+) False map3k15
XM_036935020.1 mRNA downstream 106 16098605 ~ 16205054 (+) False map3k15
XM_036935021.1 mRNA downstream 106 16098605 ~ 16205054 (+) False map3k15
XM_036935022.1 mRNA downstream 106 16098605 ~ 16205054 (+) False map3k15
XM_036935023.1 mRNA downstream 106 16098605 ~ 16205054 (+) False map3k15
TU1081573 other upstream 18689 16054065 ~ 16054638 (+) True G948524
TU1081090 other upstream 280293 15747373 ~ 15793034 (+) True boc
TU1080943 other upstream 413865 15651974 ~ 15659462 (+) False atp8a2
TU1080953 other upstream 483551 15587830 ~ 15589776 (+) True rnf6
TU1080898 other upstream 633465 15437681 ~ 15439862 (+) True LOC110535338
TU1081677 other downstream 111430 16209929 ~ 16210840 (+) False ccl20b
TU1081665 other downstream 224851 16323350 ~ 16326407 (+) True G948587
TU1081649 other downstream 234558 16333057 ~ 16335292 (+) True LOC110535372
TU1081652 other downstream 445316 16543815 ~ 16545289 (+) False LOC110535387
TU1081800 other downstream 455701 16554200 ~ 16601892 (+) True G948710

Expression Profile