RNA id: TU1081678


Basic Information

Item Value
RNA id TU1081678
length 331
lncRNA type sense_over
GC content 0.42
exon number 2
gene id ccl20b
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16209929 ~ 16211192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCAAGGAGAGAGGATTCGGGGAAAGACAATTGACATTCAGTCACTGTGGTGTGTAATGTGCGTTGACATTGTACTGTGTTGTGGCAGCTTCCAGAATCTAAGGAACAAGTTTGTGTGTGCCGACCCCTCTCAAGACTGGACCAAGAGGGTACAACGCTGTCTGCGCAAGCGTCAGGAGAAGAAATCCCAACTGAAGAAAAGGGTCTGAACTCATGTTGCCATGGAGAGGGCTTTCATTACAGAACACCATGTAATACATTATTGATTTAATGTTATATTTTACTGAGACAAACAGCAATATATTTCAATATACAGAGAGATTCATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1081616 lncRNA upstream 35819 16174292 ~ 16174572 (+) True G948554
TU1081599 lncRNA upstream 36676 16136747 ~ 16173715 (+) False G948545
TU1081602 lncRNA upstream 39085 16157571 ~ 16171306 (+) True G948545
TU1081604 lncRNA upstream 68937 16136747 ~ 16141454 (+) False G948545
TU1081552 lncRNA upstream 111894 16090404 ~ 16098497 (+) True sh3kbp1
TU1081661 lncRNA downstream 55306 16266146 ~ 16278483 (+) True G948583
TU1081655 lncRNA downstream 87516 16298356 ~ 16298602 (+) True G948577
TU1081710 lncRNA downstream 88098 16298938 ~ 16299177 (+) True G948626
TU1081715 lncRNA downstream 89036 16299876 ~ 16300305 (+) True G948630
TU1081714 lncRNA downstream 91006 16301846 ~ 16302047 (+) True G948629
XM_036935019.1 mRNA upstream 5337 16098605 ~ 16205054 (+) False map3k15
XM_036935020.1 mRNA upstream 5337 16098605 ~ 16205054 (+) False map3k15
XM_036935021.1 mRNA upstream 5337 16098605 ~ 16205054 (+) False map3k15
XM_036935022.1 mRNA upstream 5337 16098605 ~ 16205054 (+) False map3k15
XM_036935023.1 mRNA upstream 5337 16098605 ~ 16205054 (+) False map3k15
XM_036935025.1 mRNA downstream 30741 16241581 ~ 16253322 (+) False tfr1b
XR_005034583.1 mRNA downstream 30741 16241581 ~ 16253322 (+) True tfr1b
XM_036935026.1 mRNA downstream 43169 16254009 ~ 16274994 (+) False tnk2a
XM_036935027.1 mRNA downstream 43193 16254033 ~ 16274994 (+) False tnk2a
XM_036935028.1 mRNA downstream 43194 16254034 ~ 16274994 (+) False tnk2a
TU1081554 other upstream 127109 16073416 ~ 16083282 (+) False sh3kbp1
TU1081573 other upstream 155753 16054065 ~ 16054638 (+) True G948524
TU1081090 other upstream 417357 15747373 ~ 15793034 (+) True boc
TU1080943 other upstream 550929 15651974 ~ 15659462 (+) False atp8a2
TU1080953 other upstream 620615 15587830 ~ 15589776 (+) True rnf6
TU1081665 other downstream 112510 16323350 ~ 16326407 (+) True G948587
TU1081649 other downstream 122217 16333057 ~ 16335292 (+) True LOC110535372
TU1081652 other downstream 332975 16543815 ~ 16545289 (+) False LOC110535387
TU1081800 other downstream 343360 16554200 ~ 16601892 (+) True G948710
TU1085033 other downstream 2915825 19126665 ~ 19127085 (+) True G951511

Expression Profile