RNA id: XM_036935037.1


Basic Information

Item Value
RNA id XM_036935037.1
length 3845
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC110535377
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16408645 ~ 16433176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacaaaataagttacaaataacgcaaaaaaaaacacataatagcacaattggttgggcggccgtaaaactgctgccatttcttccggcgccattCTTGTCATTCTGTTAacaaaaacccacatatctttaagatattttcgcATTTCTCTCCCTCACGAGGAGGGAGGATAGTataagttcacagaagtaacaggTAAATGTAGACCTACCAATTagctattgtttttattttttactgataATTTGGTTTATGATTGAAATGTGTCAATCACTTAATGTGATTACCAAATCTTTAAGTGACCAAAAAATCAGTAACAGAATGACTGCAACTGAattctactgtcctcccttccactggcatactgttatgttcatcTCATAGGGTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGCTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGGTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGCTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGCTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGGTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGGTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGGTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGCTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGGTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGGTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGGTCTGCTTCCACTGGCATATTGTTATGTTCATCTCATAGGGTCTCCTTCCACTGGCATattgttatgttcagctcatagggtCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGGTCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGCTCTCCTTCCACTGGCATattgttatgttcagctcatagggtCTCCTTCCACTGGCATATTGTTATGTTCATCTCATAGGGTCTGCTTCCACTGGCATattgttatgttcagctcatagcaTAAtggttttctttctctttctgacgCGTGGTGGTCAAAGCAATAGTGTAAAAACAGTCCAgacaaccccttcctctctctctccctgtctctcttctctctctctctctctctccagctaatGTCACCTCTCTTGGCTCTTACTGACCGTAACCAGCCCTCTCACCCACTGAGCACTGACGGACACCAGACGTCCATAGACGTTGAAAGTcgttgaaatttgGTTCCGGTTCCTAGGGTCGGTGGCATCCCTGACAACCAGGACGTTCTCCCGGGGGCCTGTGTCTTTGCAGGGGAAGGCCCCGGACATGTCTGAGGGAAATGCTCACTTGCTAATGTCCAATGTGCGCAACAGGCTGAGAGAGATTGTGGGAGCGTCCACTAACTGGAGAGACCACCAGCAGGCGCTAGCTGACCGTTTGTCATTGTCCAATCAGCTGGCTGGTTCTCAGGATGAGCTTCCCGTCCGCAGGATGAAGGACAGCTACATAGAGGCCCACCTTCCCCTGGGCACAGACCCTACCCTTAGAGAGAAATACCTCAACTACCTCAAAGGTGTCAGGTTTGGCCGTATCCTGGAGGATCTGGACAGTCTAGCAGTGTTGATCTGTTACTCTCACACCCATAACAAGACACTTCAAAGATCTCCTCTGTCCATCGTCACTGCCCTGGTGGATAAGATAGACATGAGGAAACAAATCATCCACCCTGACTGTGACATCAAGTTCACTGGTCACGTGACCTGGGTGGGGAAGACCTCCATTGAAGCCAAGATGCACATGTCTCAGTACCACGGTGGGGCCTACACTCCAGTTCTGGATGCTACGTTTGTTATGGTGGCCAGAGACCCTGAGAACAAGAGggcAGCGTTTGTTAACCCTCTGAAGCCAGAGGGAATTGAGGAGGAGAAACTGTTTCACCAGGGAGAGATCAATAAGACGCGTCGTATAGAGCTGAGTACAGCGTCTCTACTGAAGGTGGCCCCTACTGCTGAGGAGAGGAAGATCGTACACAGCCTGTTCCTCAACACCCTGGACAGCAAGACAGTGAGTTTCCGTAGCAGAGTTCTGCCTCCTAACTCAGTATGGATGGAGGATGCCAAAGTCAAAGGACTGGAGATCTGCCATCCACAGGAGAGGAACATCTTTAACAGGATCTTTGGAGGGTTTCTGATGAGGAAGGCTTACGAGCTGGGCTGGGCCAACGCATGTGTCTACGGGGGGTGTCGGCCTAACTTGGTTGCCGTGGACGATATCCTCTTCCGGAAGCCAGTAGAGATTGGCTCCCTACTCCTGCTCTCATCAcaggtgtGTTACACAGAGGGAAAGTACATCCAGGTCAGAGTTCATACAGAGGTTCTTGACCCCCTGACCCGGCAGCACAACACCACTAATGTCTTCCACTTCACCTTCGTCACAGACAAAGACGTCCCCAACATAGTGCCACAGAGCTACGGCGAGTCCATGTTGTACCTGGATGGAAAGAGACACTTTAACCAGACCCTGGAGTCTCAGTGAGACGTGATGAATACTGACGAACCATGACCCAACACAACAACTACCTGCTAAAGCCTTAGTGTCCAGCCACCGCACCCGCCCTCCTTACCGtacggtgtgtgtatgtgtatgtgtgtgtctatttgcaTAACAAGGTATCTATTAATTTGTTTACCTCTAtgtaccatatatatatatatatatatttttttataaactgggtggttcgggccctgaatgctgattggctgacagccgcggtatatcagaccgtataccatgggtatgacaaaacatttcattttactgctctaattatgctggtaaccagtttataatagcaataaggcaccttgggggtttgtggtatattgccaatataccacggctaagggctgtatccagttACTCCGCAATGCCTCgtacctaagaacagcccttagctgtggtatattggccatataacacaCCCCCttatgccttattgcttaaatatatgcATGCTGTCTGTCTAGTATAGGTCTGTTTGGTGGTTGATTCTTCTGGAGTCTGTTTACGTTCTGGGATCCTGGTTTGGGAACACAGATGTCAATAGTGCTATCACTTTTTTTCTACATATCTTCGACatgaaatcaaattaaatgttatttgtcacatgccgaatacaacaggtgtagaaatgcttacttacaagcccttaaccaacaatgcagttttaagacaaATAAGAGTGAAGAATTTTTCAaattaaataaactaaagttaaaaaataaaataacaataaggaggctatataaagggggtaccggtacagagtcaatgtgcgggggcaccggctAGTCGAGGTAATGgaagtaatatatacatgtaggtaggggtaaagtgactatgcatagataataaacagcgagtagcagcagcgtaaaataaaGGATGGGCggttaatgcaaatagtctggctagccatttgattagcatGATTACATCAACAGGATTTTATATTTTGTCAAAATGTTATTCATGCTACACGGTCTTACAGCTTTAAAACGTGTTTTTCACAGATACTCATCACAGGTCTTATTTTTATATATTCTATTTGATATAATCTCCATCTGTGTGTACACTAGGGCGAGTGAATGGGTGTGTATGGGTTATTTAAGGGAAAGTGGCATCTTTGCTCGATTCGATCAAAGTTATGTAACAAATGACACATATTTGCAATAAATATTTATCCTTCATTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1081635 lncRNA upstream 9100 16405167 ~ 16408397 (+) True G948565
TU1081654 lncRNA upstream 25321 16391366 ~ 16392176 (+) True G948576
TU1081723 lncRNA upstream 94532 16322120 ~ 16322965 (+) True G948638
TU1081712 lncRNA upstream 108871 16302932 ~ 16308626 (+) True G948627
TU1081714 lncRNA upstream 115450 16301846 ~ 16302047 (+) True G948629
TU1081759 lncRNA downstream 38538 16471714 ~ 16472562 (+) True G948674
TU1081646 lncRNA downstream 45618 16478794 ~ 16480401 (+) True G948569
TU1081760 lncRNA downstream 51815 16484991 ~ 16485279 (+) True G948675
TU1081762 lncRNA downstream 55486 16488662 ~ 16489052 (+) True G948677
TU1081763 lncRNA downstream 56559 16489735 ~ 16489999 (+) True G948678
XM_021620342.2 mRNA upstream 19706 16383721 ~ 16397791 (+) False klhl15
XM_021620344.2 mRNA upstream 19706 16383722 ~ 16397791 (+) False klhl15
XM_021620345.2 mRNA upstream 19706 16383722 ~ 16397791 (+) False klhl15
XM_021620343.2 mRNA upstream 19706 16383935 ~ 16397791 (+) True klhl15
XM_021620338.2 mRNA upstream 61570 16343328 ~ 16355927 (+) True lrrc34
XM_036935043.1 mRNA downstream 1285 16434461 ~ 16441313 (+) False LOC110535379
XM_036935042.1 mRNA downstream 2582 16435758 ~ 16441313 (+) False LOC110535379
XM_036935040.1 mRNA downstream 2598 16435774 ~ 16441313 (+) False LOC110535379
XM_036935041.1 mRNA downstream 2859 16436035 ~ 16441313 (+) False LOC110535379
XM_036935044.1 mRNA downstream 4027 16437203 ~ 16441313 (+) True LOC110535379
TU1081649 other upstream 82205 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 91090 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 206657 16209929 ~ 16210840 (+) False ccl20b
TU1081554 other upstream 334215 16073416 ~ 16083282 (+) False sh3kbp1
TU1081573 other upstream 362859 16054065 ~ 16054638 (+) True G948524
TU1081652 other downstream 110639 16543815 ~ 16545289 (+) False LOC110535387
TU1081800 other downstream 121024 16554200 ~ 16601892 (+) True G948710
TU1085033 other downstream 2693489 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 3328089 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 6293377 22726553 ~ 22741247 (+) True tlcd4a

Expression Profile