RNA id: XM_036935041.1


Basic Information

Item Value
RNA id XM_036935041.1
length 2101
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110535379
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16434461 ~ 16441313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCTCCAGCCCCAGCTAGCAGTGCTGACCTTGTAGGCCTGGTAACATGGTCAGTCAGTACGAACTCAACGACACAACAACCAAATCGATTTACTGTCGCTGTCTACTGCGGggggCCAGGATGGTGGCTTCCACACGCTCCTTCGCTGACTTCACCCCACAGGCCAGCTTTGACGTCAAGAAGTGTGAGCTGCACCGTCTGGAGGCGGGCCCCTCTGAGACAGCGGTGTTGACCAGAGAACAGGGCCTCCAGTACTACAGAACCATGCAGACCATGAGACGCATGGAGCTGAAGGCTGACCAGCTGTACAAGCAGAAGATCATCAGAGGCTTCTGCCACCTCTACGACGGACagGAGGCGTGTGCGATGGGCATCGAGGCAGGCATCAACCCAACAGACCACCTGATCACGGCGTACCGCGCCCATGGCTACACCTTCACAAGGGGCGTGTCTGTAAGAGAGATCTTGGCTGAACTCACAGgtcgTAGAGGGGGTGTGGCCAAGGGTAAAGGTGGTTCTATGCACATGTACGCTAAACACTTTTATGGAGGGAACGGAATCGTGGGGGCTCAGgTTCCATTAGGGGCAGGTGTGGCACTAGCCTGTCAGTACCAAGGCAACAACCAGGTGTGCGTGGCGCTGTACGGAGACGGAGCAGCCAACCAGGGACAGATCTTTGAGTCGTTCAACATGGCAGCTCTGTGGAAGCTGCCGTGTATCTTCATCTGTGAGAACAACAAGTTTGGCATGGGGACGTCTGTAGAGAGATCTTCCGCGAGCACTGACTACTTCAAGAGAGGAGACTATATACCTGGAATcaagGTGGATGGCATGGACGTTCTGTGTGTGAGGGAGGCCATCAAGTTTGCTGCAGACtactgcagagctgggaagGGTCCTATTGTGATGGAGCTGGAGACCTACCGTTACCATGGACACAGCATGAGTGACCCCGGGGTTAGCTACCGTTCACGTGAGGAAATCCAGGAAGTGCGCAGTAAGAGTGACCCCATAACCATGCTGAAGGAGCGTATGCTGTCCAACAACATGGCTTCTGTGGAGGAGATCAAGGAGATAGATGTAGAGATCAGGAAAGTGATCGAGGATGCGGCCCAGTTTGCGATCTCTGACCCTGAGCCGCCATTGGACGAGCTCTGCAACCACATCTTCGCCAACAATCCACCCATGGAGGTCCGTGGGACCAACCCCTGGGTCAAACTGAAGTCTGtcagttagacacacacacacacatggaccaAACTACTGTACAGTCTATCAGCTGCACATCCCTTTCTACCCTCTGCAACCAACCCCTGGGTGAAAGTCTactcctcctgtcctctgtctcccttctcttATTCCCTCATGAATTGTCTCTAAATGCACTATATGAAAGAAGGTCATGACCCTGTAGGTCGGAGTTCAGTCTGTAGCAGCAATCCAAACCAGTCTGACACCTCTGACACTGACGTCACTGGTATTTATTGACACTGTATTGAGTATATTATGTAGTTTTATATTTATGTATTCTCCTGACACTGAGGGACCACCTGTCTGTAGATTGGAGGTGTATGGCTTagggcaggcttttgttccagcctagcactaacacacctgattcaatcaGTCATCAAGACATTGATTAGCTGGATCTGGTGTGTTCACGCTGGTACTTACTAAGCTTGCACACCCTCTAACTCTCCAGTACCAGGGTTGGCTACCCCTGGAtaagggagtgtgtgtggggaTGGTTCTAGGTTAAACCAAGTTCATCTCCCTGTAAGGTTTCAGACTGTTAGTATGTATTACCTCTGACCCAGATGTTATTGTAGCACCGTAGCACTTTGACTAGATAGATAAACTAATGAGATATCATACTGCAAGTCATTATTGTCATCATAGAAAAAGGGACCATCAATGGTGGTCTATTTCttgctcttcctctccttctttaaCTTCCTCCCGGGCATCAATCTATCCTTCTTTCCGTGAGCAGCGGATACTGATCCAAGCACTAACAGAAGAACTGAAAAACTGAACGATTGTTGTACAGTTTGTTGTGATTTGACTGAAGCAATAAAATTGGCAGAGACTGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1081635 lncRNA upstream 27638 16405167 ~ 16408397 (+) True G948565
TU1081654 lncRNA upstream 43859 16391366 ~ 16392176 (+) True G948576
TU1081723 lncRNA upstream 113070 16322120 ~ 16322965 (+) True G948638
TU1081712 lncRNA upstream 127409 16302932 ~ 16308626 (+) True G948627
TU1081714 lncRNA upstream 133988 16301846 ~ 16302047 (+) True G948629
TU1081759 lncRNA downstream 30401 16471714 ~ 16472562 (+) True G948674
TU1081646 lncRNA downstream 37481 16478794 ~ 16480401 (+) True G948569
TU1081760 lncRNA downstream 43678 16484991 ~ 16485279 (+) True G948675
TU1081762 lncRNA downstream 47349 16488662 ~ 16489052 (+) True G948677
TU1081763 lncRNA downstream 48422 16489735 ~ 16489999 (+) True G948678
XM_021620347.2 mRNA upstream 2859 16409895 ~ 16433176 (+) False LOC110535377
XM_036935047.1 mRNA downstream 3491 16444804 ~ 16478553 (+) False LOC110516493
XM_036935048.1 mRNA downstream 15949 16457262 ~ 16478553 (+) False LOC110516493
XM_036935046.1 mRNA downstream 19010 16460323 ~ 16478554 (+) True LOC110516493
XM_036935049.1 mRNA downstream 55966 16497279 ~ 16513908 (+) False LOC110535384
XM_021620356.2 mRNA downstream 55968 16497281 ~ 16513908 (+) True LOC110535384
TU1081649 other upstream 100743 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 109628 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 225195 16209929 ~ 16210840 (+) False ccl20b
TU1081554 other upstream 352753 16073416 ~ 16083282 (+) False sh3kbp1
TU1081573 other upstream 381397 16054065 ~ 16054638 (+) True G948524
TU1081652 other downstream 102502 16543815 ~ 16545289 (+) False LOC110535387
TU1081800 other downstream 112887 16554200 ~ 16601892 (+) True G948710
TU1085033 other downstream 2685352 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 3319952 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 6285240 22726553 ~ 22741247 (+) True tlcd4a

Expression Profile