RNA id: XM_021620366.2


Basic Information

Item Value
RNA id XM_021620366.2
length 2241
RNA type mRNA
GC content 0.49
exon number 12
gene id chrnd
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 16621214 ~ 16632688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCGCCACTCACGGCTCCGGGGGTCACGTCACGAGCACAAGGAGAGAATGGATAACTTTTTTTAAGTTCCAGAGTCTGTCCGGTGTCGAACAGCCATGAACCACCGTTTATTGGGACCGGGAGCCCTGGTTCTGTTCGCAGTCCTTGTAACAGagtgtttGGCCAGGAATGAGGAAGAGCGGTTGATTCAACATCTGTTCAAGGAGAAGGCTTACAACAAGGACCTCCGGCCCGTAGAAAAACAGGACGAAGCTGTCGTTGTGTACATCGCCCTCACACTCTCTAACCTCATCTCTCTGaAAGAGGTAACCGAGACTCTGCTGACCAATGTGTGGATGGAACATGGCTGGTATGACACCAGGCTGTCATGGAACACCGCTGAGTTTGACGATATCGATGTCCTGCGCCTCCCGCCCAGCATGGTGTGGCTGCCGGAGATCGTCCTAGAGAACAATAACGATGCCCAGTTCCAGGTGGCGTACTACTGTAACGTATTGATCAATCCGGAAGGCTATGTGTACTGGCTGCCGCCAGCCATCTTCAGATCCTCCTGTGCCATCAACGTCAACTACTTCCCCTTCGACTGGCAGAACTGCACTCTCAAGTTCACCTCCCTGACCTACAATGCTAAGGAGATCACCATGCAGCTGAAAGAGGAGCTGGAAGATGACAAGTCCTACAAGGTGGAGTGGATCATCATAGACCCTGCAGGgttcacagagaatggagagtgggaaatcattcataaaccggCCCGTAGGAACACCTATAAGAATATCCCTATAGAGAGCAACAAGCACCAGGACATCACCTTCTATCTCATCATCAAACGCAAACCTCTGTTCTATATCGTCAACATCATAATCCCCTCTGTCCTCATCTCCTTCATGGCTACACTGGTCTACTACTTACCAGCTGACAgtgggGAGAAGATGACTCTGTCCATCTCGGTGCTGCTGGCTCAGTCTGTGTTCCTGCTGCTGATCtcacagagactgccagagaccTCCATGGCTATACCACTTATTGTCAAGTATCTGATGTTCATCATGGTTCTGGTTACGGTGGTGGTGTTGCACTGTGTGGTGGTCCTCAACCTGCACTTCAGGAGCCCCAGTACACACATCATGACAGAGTGGACTAGAGAGTTCTTCCTGGAGAGGTTGCCCCGCCTGCTGCGGATGTCCCGCCCTGCAGAGTCAGAGTCTAGCTGGGAGGGGGCGTTGCCAAGGCGATCTAGCTCGGTTGGTTACATTGCTAAGGCGGAAGAGTACTACAGTGTGAAGTCACGCAGCGAGCTGATGTTTGAGAAACAGTCTGAGAGACATGGGCTGGCCACACGGGCTACACCTGCGGCAGCTGTGAAGCCCCAGTCAGATGGAGAGGTGACAGAGCAGCTGTACTCTGAGATGAAGCCTGGTGTGGATGGAGCCAACTACATTGTCAAACACATGCATGACAAGAATGACTACAACGAGGAGAAGGATAACTGGAGTGGTATAGCTCGTACGGTGGACCGTCTGTGTCTGTTCCTGGTCACCCCAGTCATGACAGCAGGCACCATCGTCATCTTCCTCATGGGTATCTACAACCACCCTCCGCCCCTGCCCTTCGAGGGAGACCCCTACAACTACCTGGAGGAGAACAAGCGCTACGTCTGATACACACCAACGCTTACACACGTTCGCACACATGTGAAGTGTGGTTCTGCTGTTTGTTCACCTTCACCTTCACTAACACATCCGCAACCgcccaaatataaaatatgaggcCTGCCCCCGACCCTAACCCACAAATATAGAAAATGCACTGTGGGCCTACAGTCAGATGGCAGAACTATTTTTGGACAGGCCTTTGTATATAGGCCTATGTTTCTGCTTATCATTTCCAACATTTTGGTAGgttatttgttagtcaacttgtttGTAATTAGATAGGCCTAAATGTAGCTCCTCTACTGTCATTACTAGTTGACCTAGAACACTAAGTAATCCCTTAACCAAAATGTAATTAATCCATAGAATTAATGTTTCAGTCAACTTGACATCGGTAAAGTTTGTTTTCTCTTTCATCTCTGCTTCTTTTGCAGCAAAGACATGTAGGGCCCGGGCAAAAATtctataacaaaaaaaaaactgggaaagatttttttgcaaaatttccaaatgacatcagtttgaccggtttttagaaatgtaaaaGCTATTAAAAAGACCCAACATGTTTTTGATAAGATTTAA

Function

GO: NA

KEGG:

id description
K04816 CHRND; nicotinic acetylcholine receptor delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1081666 lncRNA upstream 35004 16549256 ~ 16586210 (+) True G948588
TU1081658 lncRNA upstream 55446 16564549 ~ 16565768 (+) True LOC110535387
TU1081802 lncRNA upstream 58315 16562019 ~ 16562899 (+) True G948712
TU1081798 lncRNA upstream 91773 16529237 ~ 16529441 (+) True LOC110535386
TU1081797 lncRNA upstream 93241 16527757 ~ 16527973 (+) True G948707
TU1081963 lncRNA downstream 106261 16738949 ~ 16742665 (+) True G948863
TU1081964 lncRNA downstream 107428 16740116 ~ 16744527 (+) True G948864
TU1081965 lncRNA downstream 114251 16746939 ~ 16748502 (+) True G948865
TU1081968 lncRNA downstream 116927 16749615 ~ 16750464 (+) True G948868
TU1081983 lncRNA downstream 163754 16796442 ~ 16796686 (+) True G948883
XM_021620365.2 mRNA upstream 14632 16595471 ~ 16606582 (+) True si:ch73-264p11.1
XR_002475247.2 mRNA upstream 55431 16543993 ~ 16565783 (+) False LOC110535387
XM_021620364.2 mRNA upstream 63514 16543682 ~ 16557700 (+) False LOC110535387
XM_021620363.2 mRNA upstream 63514 16543993 ~ 16557700 (+) False LOC110535387
XM_021620362.2 mRNA upstream 79956 16530636 ~ 16541258 (+) False LOC110535385
XM_036936612.1 mRNA downstream 39402 16672090 ~ 16683601 (+) True LOC110536563
XM_021620369.2 mRNA downstream 59777 16692465 ~ 16719098 (+) False LOC110535391
XM_021620370.2 mRNA downstream 59777 16692465 ~ 16719098 (+) False LOC110535391
XM_021620371.2 mRNA downstream 59777 16692465 ~ 16719098 (+) True LOC110535391
XM_036935057.1 mRNA downstream 86836 16719524 ~ 16760850 (+) False LOC110536564
TU1081800 other upstream 19322 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 75925 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 285922 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 294807 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 410374 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 2493977 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 3128577 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 6093865 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 7032600 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 7143084 23775772 ~ 23776845 (+) True G956797

Expression Profile