RNA id: XM_036935085.1


Basic Information

Item Value
RNA id XM_036935085.1
length 2213
RNA type mRNA
GC content 0.50
exon number 11
gene id spag6
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17281407 ~ 17285569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTAACATGCGAACCCAAACTTGAGGCTGCGGGAGTTAGATGCTGCACGGCACTGTTTACTGCTGCTTTTCATGGAAAACTCACATATTTATTAGACATTTATTAGAAAAGTggagttctttaaaaaaaaaatatctaattGTAATCATGAGTCAACGACAGGTTTTACAAGTGTTTGAGCAGTATCAGAAATCAAGGGCACAGTTTGTGCAGACTATTGCTGAGCTTGCCACAAGACCACAAAACATTGAAACTTTACAAAATGCTGGTGTGATGTCCCTGCTGAGGCCTTTACTGCTAGACGTGGTTCCTACCATCCAGCAGACAACTGCTCTGGCTCTAGGACGACTGGCCAACTACAATGACGACCTGGCAGTGGCCGTCGTCAAGGGAGACATCCTCCCACAGCTCGTCTACTCCCTGACCGAGCAGAACaggttcTATAAGAAGGCAGCAGCGTTTGTCCTGCGTGCGGTGGCCAAGCACAGCCCTGCTCTGGCCCAGGCCGTGGTGGACTGTGGAGCGCTGGACGCTCTGGTCATCTCTCTGGAAGAGTTTGACCCTGGGGTCAAGGAGGCTGCTGCTTGGGCTCTGGGATACATTGCACGCCACAATGCACACCTGTCTCAGGCGGTAGTGGATGCGGGGGCCGTTCCTCTGCTGGTGCTGTGTATCCAGGAACCAGAGGTTGCCCTGAAACGCATCGCTGCCTCGGCCCTTAGCGACATCGCCAAGCACTCCCCTGAGCTAGCTCAGACTGTGGTCGACACCGGCGCCATCGCACACCTGGCCCAGATGATCCTCAACCCTGATGCCAAACTGAAGaggcaggtgttctCTGCCCTGAGTCAGATCAGTAAGCACTCGGTGGACCTGGCTGAGATGGTGGTGGAGGCAGAGATCTTCCCTGCTGTCCTGGCCTGCCTCCGAGACCCAGATGAGTACGTCAGGAAGAATGTTACCACACTGATGAGAGAGATCACCAAACACACacctgagctgtCTCTGATGATCGTGAATGCGGGTGGTGTGGCGGCGGTGATTGACTACCTGGGTGATAGCCGTGGTAACGTGCGGTTACCTGGGATCATGATGCTTGGATATGTGGCCGCTCACTCTGAAAACCTTGCCATGGCCGTCATCGTgtctaagGGGGTGCCCCAGCTGgccatctgtctgtctgaggaGCCAGAGGAGCACATCAAGGCGGCCACAGCGTGGGCGTTTGGCCAGATCGGCCGCCACACCCCGGAACATGCTAGGGCCGTGTCCACAGCTAACGTCCTGCCCAAGCTGCTGGCCCTCTACATGGACACGGACAGCTCAGAGGACCTGCAGGTCAAGGCTAAGAAGGCTCTGAAGAGCATCCTACAGAAGTGCACCTATCTGCCTGCTCTGGAGCCCCTGCTCTACGAAGCTCCCAGCAACATCCTGAAACATGTTGTCTGCCAGTTCAGCAAGgtGCTGCCCCATGACAGCAAGGCTCGTCGTCTGTTTGTAACCAGCGGAGGCCTGAAGAAGGTTCAGGAAATTAAGGCTGATCCTGGATCTGCCCTGCAGGAGTACATCAACTCTATCAACAACTGTTACCCTGAGGAGAtagtcagGTACTACTCCCCTGGCTACTCAGAGACTCTGCTGGCGCGGGTAGAGAAGTACCAGCCTGTTTGAGGGTCTTAGCCCAGCTTACTGGGGGTTACGGGCTCACATACCTCTATTACTGACGATTTCACCCCCGACCATGAATATGAGGACAGCAGACCTATATAAAACAATCTCTTATTATTGCAGTGATTAtgttgtctgtctttgtctcaaTGGCCAGTACATTATCACATGGACTGTATATGCATTGTCATAGCTGTGTAGGTCTGTGTTAGCATTTGTTAAGAGGAATTGCATCATTAACCTGCTCAACAGTGTACTCTGTATGCCTAAACAAGTCACTTATTAGTATTGAACCATTGTATATGCAGCTAATATTCATaggtttattttatatttataggATATATGATTATTTCCACTGGAAATGTAATGTTGTGTGCATTATTGCTTTTCATCCAGCATGCAGGTctttcaaaaaataaaataaacattataGTAAATGAAACATAACAAGCCTAACACCATAAATATTTTTAATTAAAACAGGACAGTGAAAATAAAGATGTACTCAGTTTTAGATACGAACTCTGCATTGTTATTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1082152 lncRNA upstream 21390 17254674 ~ 17260017 (+) False bmi1a
TU1082196 lncRNA downstream 16768 17302337 ~ 17302783 (+) False LOC110536567
TU1082203 lncRNA downstream 27482 17313051 ~ 17313273 (+) True G949087
TU1082212 lncRNA downstream 41903 17327472 ~ 17327766 (+) True LOC110536567
TU1082232 lncRNA downstream 70449 17356018 ~ 17356404 (+) True G949103
TU1082234 lncRNA downstream 73568 17359137 ~ 17359378 (+) True G949105
XM_036935083.1 mRNA upstream 10238 17254655 ~ 17271169 (+) False bmi1a
XM_036935084.1 mRNA upstream 10238 17254655 ~ 17271169 (+) False bmi1a
XM_021620390.2 mRNA upstream 10238 17261838 ~ 17271169 (+) False bmi1a
XM_021620391.2 mRNA upstream 10238 17265466 ~ 17271169 (+) False bmi1a
XM_036935077.1 mRNA upstream 69614 17131396 ~ 17211793 (+) False mllt10
XM_036936648.1 mRNA downstream 4053 17289622 ~ 17342631 (+) False LOC110536567
XM_021620393.2 mRNA downstream 57222 17342791 ~ 17352441 (+) True LOC110535409
XM_036935091.1 mRNA downstream 71137 17356706 ~ 17369209 (+) False ezh2
XM_036935090.1 mRNA downstream 71823 17357392 ~ 17369209 (+) False ezh2
XM_036935088.1 mRNA downstream 71865 17357434 ~ 17369209 (+) False ezh2
TU1081800 other upstream 679515 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 736118 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 946115 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 955000 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 1070567 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 1841096 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 2475696 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 5440984 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 6379719 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 6490203 23775772 ~ 23776845 (+) True G956797

Expression Profile