RNA id: XM_021620400.2


Basic Information

Item Value
RNA id XM_021620400.2
length 2000
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110535414
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17444268 ~ 17537220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTACTGAAGTGAAAGTAAACTAAAGCAGGGAATTGTACATGGAAACAAAGTCTGCTGCTCGTCACAAGGCTAACAACAACACAGCAGCACAGTGTCCAACATTCAACAAGAAAACAGGAAAACTCCCACACAGACATGGCGTCCCTTAGCAGTCTCTTGTCTGAAGAGCAGATACAGTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCACTACTCCTTGTGGTCACAACTTCTGCAAGGCCTGTATCAGTGGATACTGGAATAAGCCTGGCCTGTGCCAGTGTCCAATGTGTAAGGACATGTTTTACAGAAGACCTGAGCTCAAAATCAACACAACACTCAGAGATGTTGCAGATCATTTTAagaggatgagagacagagatgagtcCCTTGCTAAGCCTGGAGACGTGGCCTGTGATGTCTGCACTGGGAGAAAGCACAAGGCCCTGAAGTCTTGTCTGGAATGTCTGACCGCTTTCTGTGAAACTCACCTGCAGCCTCACAACAGAGTTGCAGGCCTGAAGAGACACAAGCTGATCAACCCTGTGGAGAACCTGCAAGACAGGATGTGTAAGAAGCATGACAGACTCCTGGAACTGTTCTGTAGGACTGACCAGACGTGGGTGTGTACGTTCTGCACTGAGACAGACCACAAGACTCACCTCACCGTCCCGCTAGAGGAAGAGTGTGGACAGAGGAAGGCTCAACTGGAGAAGATTGAGGCAGAAGTTCAGCAGATGATCGAGGAGCGACTGCAGAAGGTTCAGGAGATCAAACACTCAGTAAAATTCAGAAAAAGAGCAGCAGAGCGAGAGATAGCAGAAAGCATGGAGGTCTTCACTGCTCTGGTGCGCTGCATTGAGAGAAGCCAGGCTGAGTTCATTGAGGTGGTTGAGGAGAAGTTGAAAGCAGCAGAGTGGCAGGCTGAAGGGCTCATTAAAGAGCTGGAGCAGGAAatcactgagctacagaggagatGCTCTGAGTTGGAGCAGCTCTTACACACCAaggaccacctccacctcctacaGAGCTCCCCACCCCTCTGTAAGCTTCCTCCCACCAGGAAGTGGCCTCAGAAATATGTCCACAGTCGGCTGTGTCTGGGAAATGTAAGGAGAGTTGTGTATCAACTGGAAGACGCTCTTCACAATGAGATGGAGAAGCTGCCTGACATCAAGCTGAAGAGGATGCAGCAGTATGCAGTGGATGTAACTCTGGACCCTGATACAGCATTTCCATTCCTCATCCTTGGTAAGAAAAATAGGAAACAAGTGAGATGTGGAGACAAGAGTCAAGAGAATCTCACTAATGATCCAAAGAGATTTAAAAATAGTTTCTCTGTCCTGGGTAAGGAGGGTTTCTCCTCTGGGAGATTCTACTATGAGGTGCAGGTGACGGGGAAGACATGGTGGTGGCTAGGAGTGGCCAGTGAATccatagacaggaaggagagttTAAACCTGAGCTCTGATGGACTCTGGACTGTGTGGCTGAATGGCGAAAATGGGTATGGAGCCAACAATTACTACCCTGTCCGCCTCTCCCTGAGAGAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGAAAGGTCAGGTCTCCTTCTATGATGTGAAAGCCAAGTCTCATATCTACTCCTACTATGGATGCAACTTCACCGAGAAACTCTATCCATATTTCAACCCCTATCTTAGCTGTAGTGGTGAAAACTCAGCCCCACTGGTCATCTCCTCTGTCAATCACAAGCAGTGAAACAAGTTGTCACTAAAATGTCAAATACTCAGCTCAGCAGTTGATTAGTTTGGGGTACTACAGATCAATATTGTTGGCTGTGCATCTCAAACTGTATATAGTATGATCAATTACCTCCCAAGGACAAAGGTTTTGAAAATGTTCCCTCTGCATTGCAAGTATTGAGAGCAAGGCTGATGGTTCTAAGTGATGTCAGAATGATGGTCAGATCTAAATTAAAGAGAGATACAAGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1082250 lncRNA upstream 40680 17403352 ~ 17403588 (+) True G949120
TU1082240 lncRNA upstream 56901 17387135 ~ 17387367 (+) True G949111
TU1082234 lncRNA upstream 84890 17359137 ~ 17359378 (+) True G949105
TU1082232 lncRNA upstream 87864 17356018 ~ 17356404 (+) True G949103
TU1082212 lncRNA upstream 116502 17327472 ~ 17327766 (+) True LOC110536567
TU1082315 lncRNA downstream 67168 17513821 ~ 17520003 (+) True G949183
TU1082322 lncRNA downstream 70262 17516915 ~ 17518259 (+) True G949186
TU1082391 lncRNA downstream 188325 17634978 ~ 17636793 (+) True G949255
TU1083478 lncRNA downstream 223079 17669732 ~ 17669943 (+) True G950188
TU1083516 lncRNA downstream 243159 17689812 ~ 17690023 (+) True G950225
XR_005034593.1 mRNA upstream 53209 17386005 ~ 17391059 (+) True LOC118937326
XM_036935090.1 mRNA upstream 75059 17357392 ~ 17369209 (+) False ezh2
XM_036934625.1 mRNA downstream 263034 17709687 ~ 17789321 (+) False tpk1
XM_036934629.1 mRNA downstream 263034 17709687 ~ 17789321 (+) False tpk1
XM_036934630.1 mRNA downstream 263034 17709687 ~ 17789321 (+) False tpk1
XM_036934632.1 mRNA downstream 263034 17709687 ~ 17789321 (+) False tpk1
XM_036934633.1 mRNA downstream 263034 17709687 ~ 17789321 (+) False tpk1
TU1081800 other upstream 842376 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 898979 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 1108976 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 1117861 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 1233428 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 1680012 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 2314612 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 5279900 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 6218635 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 6329119 23775772 ~ 23776845 (+) True G956797

Expression Profile