RNA id: XM_036935104.1


Basic Information

Item Value
RNA id XM_036935104.1
length 5368
RNA type mRNA
GC content 0.45
exon number 30
gene id pign
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17926634 ~ 17945204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAGTTAGAGAGACAGGCCTAGTTAGTGTTGGAACAGCACCATGTATAGCCATCTTTAGCAGCAGCTTACATGATTTCACGATGCAAATATCTCAATTACTACACTATAAAGAAGGTGCCAGGCATCATTTGCACATGAATGTCTGATAGGCCTTTTCAGGTCGCCATGTTATATACATGGTCACTACTATTCTGGTTGCACCTGTTCCAAGCCAGCTGGCACCTAGGCTAGGGGAGAAACTCACCACACAGCAGGTAACAAAGATTCAAAGTAACCAATCTGCCACCGGCTTGAAACAAGAAAGTGTTCAAAGaactTCTGGGGTCTCCCCAGCCCCCAGTCTTCATCATGAGGATGATAATGTTCTTCCTGGTTGGGCTTCTAGTCCATGTCATTTTCTTCATCTCCATATTTGACATCTACTTCACATCGCCCTTGGTCCACGGCATGGCCCCCCAGGTgtcccccctgcctccccctgcctcccgcCTGCTGCTGGTGGTTGCAGATGGACTCAGGGCAGACAGTCTCTATAAGCCTGATGCCAATGGATCCACCAGGGCTCCTTACTTAAGgAGTGTGATGGAAGAAACAGGGAGTTGGGGTGTGTCACACACTCGTGTTCCCACCGAGTCTCGACCTGGACACGTTGCTTTGATCGCTGGCTTCTACGAAGATGTCAGCGCTGTAGCTAAaggctggaAGGAGAATCCAGTGGAGTTTGACTCCGTGTTCAATGAGAGCAGACACACCTGGTGTTGGGGCAGCCCTGACATCCTGCCCATGTTTGCCAAAGGTGCCAGTGGGGACCATGTGTACACCTACACCtacccagcagagagagaggactttgCCTCCACCGACGCCTCCAGACTGGACACCTGGGTCTTTGATGAAGTCAAGtcgtTCCTCCAGTCTGCCAGGGTGAACTCCAGTCTGATGTCCAGTCTACAGAAGGATCAGAATGTCTTCTTCCTCCACCTACTGGGCATTGACACCAATGGACACGCCCACAGACCCATGTCACAGGAATATCTAGAGAACATACGTCTGGTTGACTCTGGGGTGAAAGAGCTGGTCTCCATGGTCGAGGACCTTTTTGACAACGATGGAAGAACAGCCTATGTGTTCACCTCTGACCACGGCATGACCAACTGGGGCTCCCATGGTGCAGGCCACCCCTCTGAGACCCTGACCCCATTGTTGGTGTGGGGAGCTGGGGTTCACACTGCTCAGAGAGTCACTGAACCCCAGAAGTACTCCGATGGATACCTACAAGAATGGCAGCTGGAGGGCCTCCGCAGGGTTGATGTCAATCAGGCAGACATAGCGCCACTGATGTCATCTCTTATTGGAGTGCCTATTCCTCTCAACTCTGTGGGTGTGTTACCACTGCAGTACCTGAACAACAGTGACCAGTTTAAAGCTGAGAGTATGTACTCTAACGCCATCCAGATACTGGAGCAGTTCAAGGTGAAGATGGCTCAGAAAAAGGAAACAACTttgtcctttctcttcactccATACCAgtTGCTGACAGAGTCACGCCAGGCAGAGTTTATCAACAAGGCCAGGGTTTTGATCCAGCTAGAGGAATATGAAGAAGCTatCTCTCTGTGCAGGTCTCTGATTGGCCATGCGTTGGAGGGTCTGTCCTACTACCACACCTATGACCGGTTCTTTCTGGGCTGTAGTGTTGTGCTGGGCTTCACAGGCTGGACCTCCTATGTGGTTCTTGTTATACTGAAGACACACGCCAGTCTCAGGAGACCACCCACACCCACTGACCAGgtgTCTGGTAAAACCCTGTGGTGGATGGGTGTGGGAGCTACGCTGCTGATTGGAATGTTCCTGATAATCCAGAGAAGTCCAgtaacctactacatctactgtctactgcctgtcCCTGTCTGGTACTCTGTCCTCAAagagtttGGAACTCTAACAGATCTGGTTCGTTCGTACAGTTCACTACCACTGGGTAAATGCTTTGGCTACTTTGCCCTGGTCACATTTGGGATTGAACTTCTGgtggtaagtttCTTCTATCGGGCCATGTTGACTGTAGGCctggctgttctctctctctggcccctccTCTCTGGCCTCTACAGCAAGGCCAAGtTTAGGTCACTGAGCTGGGTCCTGTGTTGTTTGTTTCTGGCCACATTTCCCATGATGCCAGTTGTTGGGAGAGAAGCCAACATCCACATGGTtaCCTGTGCAGGTGTACTCTCTCTGTTAATTTCCACCTTTTACCTCTGGTTGGCACGGAAACGGACTACACTACACCTGACTGACCGCTACCTCTTAATCTTCCAGATGCTCCATGTAGCAGTGTGTGCCTATGTGCCCACCAGCACTCACTCCAGTCTGCAGCTGAAACAGGGACTGCCTCTCCTCAACCAGATGATCAGTTGGACTACACTGGgttcCTCTCTGTTTGTTCCTTTGTTGAGTTCTACTCGTCTGTTCCATCGTCTGCTCAGTATCTTCCTCTCCCTCACAGCCACCTACCTACTACTGAGTACTGGgtctgaGGCTCTGTTCCCGCCAGTCTTGTCCTGGCTGATGTTTGTGTGGATCAACATAGAACAGGAAGCCATGCTCTCTCAAGGTATCTCTGGGAGACAGGAGCTGTCCACGCTTGACTTCTCTGAAAACATTGACATCACCAAGATCAGACAACTAAAGCTGGATGACATCAGAAGATCCTACTTCTTCGTTTTCTTCATAATTACAGCCTTCTTTGGTACTGGGAACATAGCATCCATTAACAGTTTTGATCCAGCCTCAGTGTACTGCTTCCTCACCGTCTTCAACCCCTTTATCATGGGAGGCCTGATGATGTGGAAGGTGATAATCCCATTCATCATCGTTATGTGTACGTTTGAAACCATCCAGGTCTCTACACAACTTTCCTCCAGAAGTCTGTTCCTCATTGTCCTGGTGATTTCTGACCTGATGGCTCTGCATTTCTTCTTCCTAGTGCAGGACTATGGGAGCTGGCTGGACATTGGCACCAGTATCAGCCACTATGTGATTGTGATGTCCATGACCATCTTCCTGATGCTGCTCAGTCTCATGACCCACATCCTCACGTCCAGGAGAGTCTCTCTGTGGAGGACACGCAAGATGCACTTCCCCTGAacactatctctctcactctgtgtgtgagTTTTTAATCATGCCTATTTATTAACATTCTCCATTAGATTTACCTGAAGTGCACAATTATGCAAAGCAAGATGCCGTAGGACTAACTTTTGATGTGCACTGGAATTGTTTTATTGTAGATGTCTACATTAAAACTGTGGCTTATCAAAGTCAAGGTAGCAAAAACATAACCACATGTAACTGATGGAGTTATTCCCGTAAAAGTTCAATTAAATGCAGTCTCAAATAGCCGCCTTCCCTTTTGAATAGCCGGGTAACggcacacatttcagcaaatGAACGCTGTACGAGGTTACTATGAATTGCCATTAATTGTTTACAAggtttaatgtttgatttgttaaatttCACAAATTCAGTAAGGactcaaaaaaaatatatatcaatcATCCATTTTTATCGACAGTAATAAGCTGGTAGCCATTGGCTGCGAAAAGCTGAGAACTGTTAGCTAACTGGCAACCACAAAAAGTCAACAACTTCGGGAGTACAGACCCCCAGAAATTGGCTGTTCGACCCCCTCTAGTGGCAAAAGTAAGAACTGCCGAAAATACACAGTCAAAGAAGAGAATAATTGTACGTATTCTGGCAAGGATCTATGGGGGAGGAAATATAGCCATACTAAGACAAAAGAAACGTGACGTATGTAAACGTGATGTAAATGATAACACATTTGTGCAGGAAATGAAGACATTGATTAAAATGCTGGAAGTGATTGCTAGAATTAAACCAATAACTATGCAAATGAGGAAAATCTGTGAAATAGAcacctggctcaaatagaagcctgtctctaataatCCTCTTTCTGTTTTCAGTGATTCAAGCCGATAAACTCCCAGGctattttacttttttatttatttatttttaaaacttttttaacggTACATAAACAGATCAGAATTCTGAAGTctgacaaatgtttgtttttttgaggGGCGACATTGTCATAGAGGACCCGGTGTGCATTCATGACTACTCCTTTTCAGCCAACTTACAAGCAAATACTTTACCATCTCATGGTAAGAGTGGCTGAGTTACTAAGCGAGAGTCAGGGTAGAGAGGCACTTCAGAGGGAGAATCTGTGAATCCAATAGCGATATAAGTAGGGGAAATCTAAAGTAGATAGATTTCAGAGGCAACACTCCATAGGCGACAGAGGTCACAGGTGTCGAGGGGAACAGTCAACATGCCGGCGATCAGAGGAAGGCTCCAGGCAGGTGGAAATGATAACATAACAGCACAGTCCAAACTCCGATGTCAGTCAGCTAGCGCGATAGCACTAAACCAAGGATACAAAAGCTACAAAACTCCAGTAGGCCAAAAAGTGGACAAAACAAATGACGAAAGACAGACGAGGTACTAAACAATTAGAGTAGGCAGGGATGATTTGAAGCAAGTCACATTCTGAATGTGCAGAATGCCCCACGTGTAATATGATAGCTGGTTTACATCACACTTCCTCGTGAATGTTGGATTGTAGCTCACCACCGCCAACACTCGGCCTCTTAATGACTGTGGCAATTGTGCATTGTGGGTAGTTTCGACAATATCCGATAATAAGTTAATACATATTTAAAACCCCAAAACAGAACTATTTTGGAAGTTCTAGTTAACCAGATCGTAACTACAACTAAGTTTGACTACACTGTGTTGTCACTTTGTTGAGTAAAAACTGCTGCTTTCTACCCTTTAAGTCTAGGTATAAGTCTATTTCAATGATCTGTATATGATATTGACAACACTATTTTCAACTACTGTTCACCAAAAACATTATGTATAATTTAAATGAAGCCATTAAGTAATGGAACaagagtaataataataatatgccatttagcagacggttttatccaaagcgactcaGTCATGCaagcatacattttacatatgggtggtcccaggtatcaaacccactaccctggtgttaaacgccatgctctaccaactgagctacaaaggaccatGCTCAAGAGTAGCCTAACTAACTTAATTGAATAGTTGATAAGGGATGTATTTGTGTGTTATTGAATTGTTTCCTACTTCGATGTGTGGTAAATAGTTTTATATTCTACAGGGTTATCTATCATATTAATATTGTATTACATAAAAACAATTCAACTGGTACTATATGATGTATTACCTGGTGGATATGGATGGTGTATTAAAATGTTAATTTACTGCCA

Function

GO: NA

KEGG:

id description
K05285 PIGN; GPI ethanolamine phosphate transferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1083674 lncRNA upstream 24764 17901359 ~ 17901870 (+) True G950347
TU1083606 lncRNA upstream 75096 17840822 ~ 17851538 (+) True G950303
TU1083604 lncRNA upstream 87477 17835298 ~ 17839157 (+) True G950302
TU1083626 lncRNA upstream 95754 17830013 ~ 17830880 (+) True G950317
TU1083539 lncRNA upstream 218016 17708395 ~ 17708618 (+) True G950246
TU1083715 lncRNA downstream 11483 17956687 ~ 17957901 (+) False G950378
TU1083716 lncRNA downstream 12037 17957241 ~ 17958862 (+) True G950378
TU1084058 lncRNA downstream 208899 18154103 ~ 18154635 (+) False G950673
TU1084057 lncRNA downstream 209026 18154230 ~ 18155431 (+) True G950673
TU1084075 lncRNA downstream 247515 18192719 ~ 18195217 (+) True pex2
XM_036934625.1 mRNA upstream 137313 17709687 ~ 17789321 (+) False tpk1
XM_036934629.1 mRNA upstream 137313 17709687 ~ 17789321 (+) False tpk1
XM_036934630.1 mRNA upstream 137313 17709687 ~ 17789321 (+) False tpk1
XM_036934632.1 mRNA upstream 137313 17709687 ~ 17789321 (+) False tpk1
XM_036934633.1 mRNA upstream 137313 17709687 ~ 17789321 (+) False tpk1
XM_036935108.1 mRNA downstream 4225 17949429 ~ 17960000 (+) False LOC110535422
XM_036935106.1 mRNA downstream 4230 17949434 ~ 17960000 (+) False LOC110535422
XM_036935107.1 mRNA downstream 5336 17950540 ~ 17960000 (+) True LOC110535422
XM_036935105.1 mRNA downstream 14982 17960186 ~ 17981897 (+) False hnf4g
XM_021620408.2 mRNA downstream 18422 17963626 ~ 17981894 (+) True hnf4g
TU1081800 other upstream 1324742 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 1381345 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 1591342 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 1600227 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 1715794 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 1181461 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 1816061 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 4781349 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 5720084 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 5830568 23775772 ~ 23776845 (+) True G956797

Expression Profile