RNA id: XM_036935106.1


Basic Information

Item Value
RNA id XM_036935106.1
length 1461
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110535422
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17949429 ~ 17960000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTCGTGAATGTGGTGTTGTGTGCTTCTGACTCTGCAGACAGTATGTAAAAAGGACCTGTCAAACGCACTGTGCTTTTTTACAAATAAAAGTGGGTGGTAAAGCAGCTCTGGTAAGGGTGGTGCAtaggtcacactctctctcacacgcataCTGTGTGCCCTGACACTCACAAAAACTTCCTGACACTCACACCACCCTGATTTCCTTCTCTGTGGAAAGTTTTTACCTGATCCATCAGAAGCGAAGTTGGCGTCTCTGGTTCCCTCTAACTCTACCATGTCCGACAAGCCGGAAACCATGTCCATCCTCAAACGTCTTACCCTGTTGTCCATCTATAGCCTGGTCCTGGTCATTGGGGTCATCGGGTTGGCCCTGATGATCCACATCCTCCAATCCAACATGCGATCAGTTATCACCATCGCTATGCTCAACCTCACCCTGGCCCACTTCCTGTTCCTACTCACCGTACCCTTCAGGATCTACTACTATGCTGCTGGTTACTGGATGTTGGGGGAGATGCTGTGTAAGGGGGTCAGTGCCATGATCCACGTGCACATGTACATGGCTTTTGTTTTCTACGTGGTCATCCTCGTCATACGACTGCTGGGGTTCCATAGCAAGAAGGATCGCTACGAGTTCTACAGgaAGTTGCATGCTTTTGGCGCCAGTGTGGCAGTGTGGACAGTGATGTTTATGGTCATCCCCCCCATCCTTTATTACAACTACGGCAAGGACGTCCACGataacaccaccaacaacaagaCAAACACAATGTCCAACAATTATTCCCACTGTTTCCAGTTCGGCAACCACCTGAAAAAACACATTGTTGCCAAGGTGCTGAACTACATCATGAGCTCTGTGATCATCATTGTGGCCTGTGTGCTGACGGCACTGCAGTGTCATGTCATGGTCCTTCTGACCAGGAAGTATGGGCGAGACTGCATGTCTCACCAGGAGTTCTGGGCTCAGCTGAAGAGCCTGTGTTTTGCTTTGGTGCTGCTTGTGTGTTTTGTCCCCTATCACGTGTTCAGGATGTACTACCTGGGACACCTTGAGCTGGAGAACATTAACGAGGTATTCCTCAGTCTCACGGCCTTCAGCTGTTTCGACATGCTTACCTTCCTAGGGAGGGGACACTGCTATATGTGTAACAGAGCACGGACTGTGTGACCTCTTCTCACACAAACTCAGAGCCGAAACCTTGCTGTAAGAGCGTTTCCTTTTTAAACAGTACTTTAGCGCCATCTGCTGCTTATTCATATAGCTACGCAAGAGAGTACGTCTACTATAGACTTCACTATAATTTATTTATAATCTTATTGGAATTTAAAATAACTTGTGCCAATGATGTTTCTCTCTATATGCCGATTTCACTGTTTGCTAAAACTATTTGTAAGGGCGAGATCTGGCTACATATGGTccaaatattgtaataaataaatacatcgcTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1083674 lncRNA upstream 47564 17901359 ~ 17901870 (+) True G950347
TU1083606 lncRNA upstream 97896 17840822 ~ 17851538 (+) True G950303
TU1083604 lncRNA upstream 110277 17835298 ~ 17839157 (+) True G950302
TU1083626 lncRNA upstream 118554 17830013 ~ 17830880 (+) True G950317
TU1083539 lncRNA upstream 240816 17708395 ~ 17708618 (+) True G950246
TU1084058 lncRNA downstream 194103 18154103 ~ 18154635 (+) False G950673
TU1084057 lncRNA downstream 194230 18154230 ~ 18155431 (+) True G950673
TU1084075 lncRNA downstream 232719 18192719 ~ 18195217 (+) True pex2
TU1084097 lncRNA downstream 246355 18206355 ~ 18206604 (+) True G950706
TU1084099 lncRNA downstream 250406 18210406 ~ 18210671 (+) True G950708
XM_036935104.1 mRNA upstream 4230 17926634 ~ 17945204 (+) True pign
XM_036934626.1 mRNA upstream 160113 17709734 ~ 17789321 (+) False tpk1
XM_036934631.1 mRNA upstream 160113 17709742 ~ 17789321 (+) False tpk1
XM_036934627.1 mRNA upstream 160113 17710033 ~ 17789321 (+) True tpk1
NM_001281415.1 mRNA upstream 160118 17709734 ~ 17789316 (+) False tpk1
XM_036935105.1 mRNA downstream 186 17960186 ~ 17981897 (+) False hnf4g
XM_021620408.2 mRNA downstream 3626 17963626 ~ 17981894 (+) True hnf4g
XM_021620411.2 mRNA downstream 232624 18192624 ~ 18204153 (+) False pex2
XM_021620419.2 mRNA downstream 830170 18790170 ~ 18802871 (+) False LOC110535429
XM_021620415.2 mRNA downstream 830180 18790180 ~ 18802871 (+) False LOC110535429
TU1081800 other upstream 1347542 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 1404145 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 1614142 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 1623027 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 1738594 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 1166665 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 1801265 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 4766553 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 5705288 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 5815772 23775772 ~ 23776845 (+) True G956797

Expression Profile