RNA id: XM_021620408.2


Basic Information

Item Value
RNA id XM_021620408.2
length 2526
RNA type mRNA
GC content 0.46
exon number 10
gene id hnf4g
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 17960186 ~ 17981897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtaaaaggatagagagagtgagagagagactgacagagggaaagagagagagggagaagagccagtaaaaggatagagagagtgagagagagactgacagagggaaagagagagagggatgaagtatCCGTCTGTGTCAGTGAGTAACTCTCTGTTGGACATGGATGTAGCCAACTACAGTGAGGGACTGGACCCAACGTACAGCACCCTGGGCTTCGATCATGCTGACGTCCTCTATGGTGGGGGAGacagtaTGCCAGCGGAGCCGGGCCTGTCCCAGGCAGATGTTGGGAACTCTAACTGTGCCATATGTGGAGACAAGGCTACAGGGAAACACTATGGAGCTTCCAGCTGTGATGGATGTAAAGGGTTCTTCAGGCGCTCCATACGCAAGAACCACATCTACTCCTGCAGGTTTAACCGTCAGTGTGTGGTGGACAAGGACAAGAGGAACCAGTGTCGGTTCTGCAGGCTCCACAAGTGTTTCAGAGCTGGCATGAAGAAAGAAGCGGTTCAGAATGAGAGAGATCGAATCAGCTCCAGAAGAAACATTCAGGACAATCAGGATCTCCCACCTATCACTGTTCTGGCCCAGGCAGAGTCACTGTCTCAACAGATCAGTGCATCCAGTCCCAGGGGTGCAGTAGATGTGTCAGAACAGAAGTCAGCTGGTGTGGGTGATGTCTGTGACTCCATGAGACAACAGCTGCTAGTGCTGGTGGAATGGGCCAAATACATCCCTGCCTTTGGTGAGCTGCCCTTGGATGACCAGgtgAGTCTGCTCAGGGCTCATGCAGGGGAACACCTTCTACTAGGGGTCGCCAAGAGGTCAATGCCTTACAAGGACTTCCTGCTTCTTGgtaATGGGTGTGTGATCCATGGTAGCAGTGCGGAGCCGGACATCGGTCGTGTAGCTAACCGTGTTCTAGATGAGCTGGTCCTGCCCTTCCAGGACATCCAGATAGATGACCATGAGTATGCTGCTCTCAAGGCCATTGTCTTCTTTGACCCCGatGCCAAGTCTCTGCGTGACCCGTCTAAGATCAAGGCGATGCGTCTGCAGGTCCAGATGAGTCTAGAGGACTATATTAACGACCGTCAGTATGACTCCAGAGGGAGGTTTGGagagctgctgctactgctgcctACTCTACAGTCCATCACCTGGCAGATGATAGAACAACTGCAGTTTGTTAAACTCTGTGGCCTGGCCAAGATAGACAACCTTCTGCACGAGATGCTGCTGGGAGGTCTGGCGGCAGAGCCCGCCCACCTCCACCACCCAGGCCACACCCAGTTAGCCCAGGACCCTCTGACAGGACACACACTGGTCATCAGCACTATGCCTGCTACACACACTACTCAGATAGtgtctcCAGACACTCCTAACCCGTCTCCGCCTCAGGTTGCAGAGAAGTCCTCTCCTAGCCCCTCCCTTCTCCTGGCTCCACCcctcccacacagacataccGCCGAATCCCCACTCTGAGTGTACAGCACCCGCCCCCACCACCGAAtaaccaaacaaacaaaacatactGTTTGTCCACCATGAATGCAGCCAAAGAAATAGCAGAAAGACTTTTCTATGGTCCAAATCCGAATTTGAGATTTACACCTGTAACTTGTAAATGAAAAAAGTTGAATTTGGATCTCAAGTTTGCATTCTGCCCTATGTTTGTAGATGTGTAAACTGTTCAGTGTTCCCTCCCCTATTCAGTGccataggttttcactccaattCGGTAGTCTTTATAGTTCGGTAGCATCTTTATAAATCATTAGATAATTCCTAAAGTCGGAGCCTCTCTTATCGTGGTGTAATTGTGAGTGTATTTGAGCTTTCTGTAGGCTCATTGTTGAATATGGAGCAGGAGATTTGCTAATCAGCATGTACTTTATATACAGTATGCGTTACTTAAAGTGCACTTATTAGTTGTGGACTGTGTCTGGAACACATGATTGTCTGTTAATATTAATGTTCACGTGTTGCCATGTAGCTTGTGGTGTGGTGCTTTACAAATACACAAACTGGAGTATACTGTATTTGTCAATAATATAATTAACCGTACATTTAGTTCCTAATCAACTTTTCAGTGTCTTTCAGTCTTTTCAGATTACTGTTCTAATATGAAATGATATGAAAATGTTCAAATTTTgtgtaaattcaattgtttgtaTGTCAGAACTATTATATTGACCTTCTAAACTGTCAAATAGTGTATACAAATGAGACAATGTAAGCTATATTTTGTAACTGTATATTCTGATGAAAACAGAACACTATTTTCAATGAATTGTAACCTAAGCTATACGCTGCATTTTTTACGCTCTTGCATGAACATGGACAAAGTTCTGATAAAATGCACACACGGCATAATCCATTGCACCACAACGGGGAAAATAAGGGGAAAGGGGCACCTCCATATGGTTTAAATAGAAATAACAAATTCACCAAGAGCATTTATACCACAAGAGGCTGATGAGGGGAGGACGTATTGTTtatgtgtttatggctgtattg

Function

GO: NA

KEGG:

id description
K08704 NR2A4, Hnf4; hepatocyte nuclear factor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1083716 lncRNA upstream 4764 17957241 ~ 17958862 (+) True G950378
TU1083715 lncRNA upstream 5725 17956687 ~ 17957901 (+) False G950378
TU1083674 lncRNA upstream 61756 17901359 ~ 17901870 (+) True G950347
TU1083606 lncRNA upstream 112088 17840822 ~ 17851538 (+) True G950303
TU1083604 lncRNA upstream 124469 17835298 ~ 17839157 (+) True G950302
TU1084058 lncRNA downstream 172209 18154103 ~ 18154635 (+) False G950673
TU1084057 lncRNA downstream 172336 18154230 ~ 18155431 (+) True G950673
TU1084075 lncRNA downstream 210825 18192719 ~ 18195217 (+) True pex2
TU1084097 lncRNA downstream 224461 18206355 ~ 18206604 (+) True G950706
TU1084099 lncRNA downstream 228512 18210406 ~ 18210671 (+) True G950708
XM_036935108.1 mRNA upstream 3626 17949429 ~ 17960000 (+) False LOC110535422
XM_036935106.1 mRNA upstream 3626 17949434 ~ 17960000 (+) False LOC110535422
XM_036935107.1 mRNA upstream 3626 17950540 ~ 17960000 (+) True LOC110535422
XM_036935104.1 mRNA upstream 18422 17926634 ~ 17945204 (+) True pign
XM_036934627.1 mRNA upstream 174305 17710033 ~ 17789321 (+) True tpk1
XM_021620411.2 mRNA downstream 210730 18192624 ~ 18204153 (+) False pex2
XM_021620419.2 mRNA downstream 808276 18790170 ~ 18802871 (+) False LOC110535429
XM_021620415.2 mRNA downstream 808286 18790180 ~ 18802871 (+) False LOC110535429
XM_021620416.2 mRNA downstream 808290 18790184 ~ 18802871 (+) False LOC110535429
XM_021620420.2 mRNA downstream 808295 18790189 ~ 18802871 (+) False LOC110535429
TU1081800 other upstream 1361734 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 1418337 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 1628334 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 1637219 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 1752786 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 1144771 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 1779371 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 4744659 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 5683394 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 5793878 23775772 ~ 23776845 (+) True G956797

Expression Profile