RNA id: TU1084812


Basic Information

Item Value
RNA id TU1084812
length 4538
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC110535429
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18790170 ~ 18802871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCAGTGAATCTGTGGCTTTTTAAGATGATTGAAAAAGTGTAGAGTGCTCAGATTACTGGAGATGAGACTAAAAACAAGGAAGGCAGGACTCGTATCACTGGGTATTCATTCACAGCTCTCATCTGTCCCAGACACACTCTAGACTAGAATCTTTTGAATACGTGGAGGCTACATTCTCTTTGGGTTCAGTCGCTTAATTTATACTGAATGGGTTCTTGATTATCTATATTTATTGAAGGTGCTTTTTTGTGAAGCTTAACTGCTTTGGTTTTATTGACTAAAATATCATAGGTAGTTACTCTGGACTTAGTCTGGATGGTGTAATGTGGTGGTTCCAAGTGAGTGTGCTCTGTGTCTTCGATTAGGACGCAACTGTCCAAATCGGTATAGTTCGGAAATTGGGTCTCAACCTTTTATAAATTATTATTAGGATTTTCCTGAACAAACTGGTTTAGATTAGGACacagttgtgtctgtgtgttttcataAAGCAGTAATGTAGCTTTCACTGTGTGGTAGCAGTCTTGATAAGCACTTAAATCAcacactcattctctctcacacacacacacacacaccagccttcGACCAGCAGATCTCCCTTCCCAACTAGGTTGTATGTAATGATTTGTCTTTTTTTCTCAGCATCTGTCATTTTGTCTTTGATTGACATGCTTCACCTATATTTCAGGATGACATTTTAAAAGTTCAAGACGATCTGACAGTGTATAGCTTAGTGTTTAAAGAATATATTATAATTTACTGCACAGGTCTTGCATCAAAAGGGTGTTTTAATTTCAGTGAAAGATTTTAACTGTTGAACATATGCATTCCTTTTTGTAACAACGGCAGCGTCTTTAGTTGTAATAGCAATAACAGCAGGCTCTGGTTGCTAGTGGCCaggtgtgtgcttgtctgtgtgtgtgtgactgtatccGCATTGTAGACAGGACAATGACTGCCTCAGCCGGTAATAACCGTTGTACAGTGATTTTAACCACAGACAAGACACCCACTTCTACCTGACAGTCCATATCACTTTCAATTAATCACTATGCATTCTACAATAACCTTTTGACTCAGATAATGATTGTGATTTATCAGTATTTCCTACACACACTACTTAACACTGGCAGGTGGTCTACCATGCAGGTCTACCTCACTCCAGGATATAGATGGCAGAGGGGCTGATGACGCACAGTCTATCTGTACAGATGGAACCTAGTTCTCTTTAGTTCCATAATCCATTCTATTTAATAGAAGGGCTACGGTGTTACGTCACTCACTAGTTTTACAGGGGAGAAACCGAGTGAACGTGCTGCTCGTATCGACTGCCTTGGGAAGGCCAGTTGGATCATTAGTGCCAAATATCAGTATTTTTCTCTATTCAGAGTCGGCCATTTTGTGCTCCGAGATTAACCAACTGCTGCTCTGGACTGACCCGTCTGTCCTCCATTTCATGCTAGCATTCCAGAACCACTGAAACTTTGATTGTTCTAGAATGAGTAGCTAAATAGTTGTGAAACTGGAACACGTAAATTAGTTCTGGAACTCTGGTTGGTTTCTGTAAGTCGTGGTCTGCTCTACATAGCAAACTCCTGTTAATGTGACAGGGCTGGCTAACAGGACTATGATGAATGTCTTGGGGCTTTTTGAAGGGGTTCAATGAGGTCAGAAGGTCCGATagtttttttgatttttttatcccagcccccgtccctgcaggaggccttttggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctacttaaataaataaatgactaCTAGTTGTGGTTGGACTGACTGGCTGAGAGACTGTCCGTCCACTCAGACAGTGTTCAGACTCAGTGGAATAGCTAGTTGGAGCCAGTGAAGTGCTGGGATGTTTGTAGAACACTGGTATTGGCTGGGGAAGGTGTATTTTCAGACAAACACAGATGCCAATTCTGTGGCCTGTTCAGGAGGGTGTGGCGTTGtagaacgttcagatagaaatgtgttGTAGAATAGGGAGTCATATCAGCTCTATTCATTACATTTCTGTCTTCAACGTACAGAACGTGTCACATCACTGAACACACCCCTCATCTTCACTCTGGTTCAGAGTGCTTTTGTTTAGAATGGTGTGTTTAATCTAAATATAACCAATGCTTGTTGTTGACGATGATGCATATATCTGATACTATATAATATTGTGTGCCTTTTGAAACTAGacatatattaataataattttgCGATGCATTTTTCCTAGCACATGCTAGTTCCTTCACTCTTGGAATCTTGAATAGTTTTGGAAAACTTGTGAAATGCAATATAGCGGCTAGGAATTAACAATCGGTTGTGTCCTTTAACTGTGTCTGTTTATATGTAAGTGGTATTGCTTTAAATTGACAATAAATCCGTTTTAAAGGAGCGACTTTgtctttgtttctttttgactgGTAAATTACTGATTTTTGAACACCCAATTGGATTTAAGAGAATTAATGAGTACACTTTTTGGATGATGCTAAAAACCAAGCTGAGTTTGCATCTCTAAAATCCAATTTGAGAAACGATACAGGTGCACGGAGGTTCAGAGTGAAGGAACTAGCAGACATGTTTCTACCACAGTCACATTTGTTTGACCATTTTATCTGTGAAAATCTATCCACAGTTGCTAATGTATTTGTAGAAATGTGTAGGGATTATCTCAAAGGGAACAACTTCGATGTGGCAGTAAGGTTAGTGTTGGGGGGAGACAGGAGGTTGGGCTTAGACGTGTAGTCTGGTGGAATGTGATACAGAACCACTGATCCACGGGGTCCTGACATGTTACTCTGTTCACTCtcttgtggacacacacacagactatatCACTCCTGAACGTTGCAGATGAGAGGGGGAACTTGACTtcagtaacacacacacgcacatacaaacGGACACTCCCTAGTCCAGAGGAGTAAGCTGtgtgctctctctgtctcagggaGCCAGGTGTCCCTGGGGTCTGGCTTGGGAAACCCCTTTGCCTTGGGAGTGGGCTCTAGCTTGGGCACCTCAGGTCTCGGAGGTACTACCTCTCTTTTTACATCTAGTCTTTTTCCTCTTCCTCATCCATCGCTACTATGTATCTTTTCTCACTGTGTTGCTTTCTTTAGATCTCACTCGCaacctccctccatttctccccctCCTTGTGTGTGGAAGACTGTTGGCAGTGTTAGGAATGTATGTGGTGTGAGTTAAGCTCTTCACTATCTAGGGCTGAAACAGTCTGCCTGTAGCTGTGGTATGTAGTGGGTCTCTATGCTTTACTCTCGTCATTGGAGACAGTTACTTCTACTATACCCTGTTTGTGAGAGCCATTACAGAGGCTTAGCTActgttctttctctcactctcttgcagtagttgtgtatgtgtggtgtgtccaTGAAGCTAAGCTCTCTCCCTCATGTAGTAGCAgcatagtgagtgtgtgtgtccctaaAGCTTggctccctcaatctctctcccctGCAGTGTTTGGTGGGGGTCCAGGTTTCGGGGGGGTAGCGACGGGGGGCTCCTCATTTGGTTTCTCCTCTGCCAGCAAGCCCTCGGGAGGGAGCCTGagtgcagGTTTTGGAAGCAACAGTAGTTCAGGGTTTAACTTCAGTAGCCCCGGCCTCAACGCGTCTGCAGGCCTGACGTTTGGCGTGTCCAACCCTCCCGCCACGGGCTTCGGCACTGGAGGTCCACTGCTGCAGCTCAAGAAGCCCCCGGTGGGAAACAAGAGGGGCAAGAGATAGAGGGGCAAAGGGAACGGGTAGGATTTggggagggtaagctgatcctagatctgtgactTCCAGAACTGTCCAAGGTTGTTTAATGGGTCACAGTCCATGTAGGTGGATTTGGGAGGGTACGTTTATTCTAGACCTGTGCCTAAGGGCGACTTCTAGAGCTGTCCAGGGGAGGTCGGGGTGTAACAGTCTGTCCCAGATCTTTATTTTTATACCTGACGGGGGAGCAGAGGGTTTGAGGGAGGGGGGTTATGCAGGACCAGGGTGGAGGGAATGAGGAGAGGGAGTCCTCGAGCAGAAAAAAAGATCAGCACATTTGGATAAGGTTCATAACCTGTGTTTTGTTCTTTTTAAATGTCCTCATTATTGTTTCATCATGATTGCTTAGTTTTTGTAGAGTTTTTATTTTATACTCTTTGtaagtgtttgttgtgtgtgcaAGGATGCATGCAAGGGAGAGAACTGGCTGTGCTGAATGTCCCACACAGCCTCAAATTAGAACCTGAAAGGGCACCAGAACACACcaaacatgcacaaacacatacGTACATTTCCTGTCAAGTGTGAatttatgcagtgtgtgtgtcaataGACCGTGGTGTTGTTTTAGGGCTGGTGGATGATGAGGGTATTACGGTCTGTGCTTTTTCGTTGTCTATTCTGATTCTCTCTGTTACCAAATAGTGATGTCATCCTGTTCTATTCATTTGAGTTGATAAGTGTAAACCTGTATTTTCAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1084761 lncRNA upstream 71081 18717429 ~ 18727093 (+) False G951277
TU1084762 lncRNA upstream 71081 18719339 ~ 18727093 (+) True G951277
TU1084753 lncRNA upstream 121146 18649576 ~ 18677028 (+) True G951270
TU1084692 lncRNA upstream 202682 18562338 ~ 18595492 (+) False G951225
TU1084851 lncRNA downstream 9567 18812408 ~ 18812766 (+) True G951340
TU1084845 lncRNA downstream 42515 18845356 ~ 18845789 (+) True G951335
TU1084867 lncRNA downstream 43331 18846172 ~ 18846434 (+) True G951352
TU1084868 lncRNA downstream 44130 18846971 ~ 18847197 (+) True G951353
TU1084880 lncRNA downstream 70010 18872851 ~ 18873196 (+) True G951362
XM_021620411.2 mRNA upstream 594021 18192624 ~ 18204153 (+) False pex2
XM_036935105.1 mRNA upstream 816277 17960186 ~ 17981897 (+) False hnf4g
XM_021620408.2 mRNA upstream 816280 17963626 ~ 17981894 (+) True hnf4g
XM_036935106.1 mRNA upstream 838174 17949434 ~ 17960000 (+) False LOC110535422
XM_036935118.1 mRNA downstream 19493 18822334 ~ 18844891 (+) True ankrd33ba
XM_021620425.2 mRNA downstream 495738 19298579 ~ 19310732 (+) False LOC110535436
XR_002475252.2 mRNA downstream 527140 19329981 ~ 19335648 (+) False LOC110535438
NM_001160571.1 mRNA downstream 539140 19341981 ~ 19345685 (+) True ssm4
XM_036935124.1 mRNA downstream 574294 19377135 ~ 19385929 (+) False LOC110535439
TU1081800 other upstream 2196282 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2252885 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2462882 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2471767 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 2587334 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 323824 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 958424 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3923712 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4862447 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4972931 23775772 ~ 23776845 (+) True G956797

Expression Profile