RNA id: XM_036935118.1


Basic Information

Item Value
RNA id XM_036935118.1
length 4265
RNA type mRNA
GC content 0.47
exon number 6
gene id ankrd33ba
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 18822334 ~ 18844891 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAAATGTACATTTGAAACCGCAGAATGATTGCACAGACGTTTTACTTTGCTTTTGCAGTATGAATCATTCTAACGATGACCAATGTCTCATAAAACGGTTGCAATGGGGTTGCCCCCATTTAGCTAAAATTATAATCTCAAAGTATTTCTGATGTCAACATTTCAGACAGAGCGGAATTAATCTGCTCAAACGAAAACGAAATGAGGGAGGGCATGAGGGGAGAGCCATGGAGAGGAGGGGGCAGTTGGCTACGAAACTAATCGGATTATGGGACTACAGTTTATCGAGTGCCTGTTTTTCTACTCTGCGCGTTAGCTGGGTGAGTGTGGCTCTTTTACTTTGGGTACTGCGTGTCTATTGTTTTCTGTCCTAATGAGGAACACATTTTTTTTCGTACTGATGATGACACAACAAGAGTTGGCGTAACTCTCGGGTTTACTTCGTGTCGGCAAAGGGGGATTGTTGACTGTTGAATTGCACTTTAAATCACGGGCATTTCATTTTCTCACTGCTCCAGACGTGATGGAAAAACTTTCTGTGTTTTATAAAATGAACAAAAACAATCATCTTTTGACTCCGGTGAAGGCTACAACCCGGTGTAGTTTACGTTGGTATTCCAGGGACAGCGCAGCGATATGATTTCATGTTAATTTATCTCTGGGATGCTGGAGTTGGACTATTATCAGGGGAATATTCCTCAACGGAGTAGGATCAGCAGTTTGCCTGTAAATTCACATCACAACGAGTTGCCAAACCTTCACTGTCATTCCATTTCCAGGCTCTTTGCAAAGTTCAACTCATACTCCGCGTTGATGTTGGAAAAAACGTCCACGTGCTCTTCGCCCGAGATCCACCCGTTCTTCCCCCCTGAGGAGGACAGCCACCTAGGGGGTTAGATGGTGCTGATCACGGATGAGAGAGACGGAGGTGGCTCCTCTACTACGGTTCGAGTcaaacagcagcagcagaaccCCAAAGGCGCCAGCGGCATCGCCCAGGTCCATCCGACCATTACCGAGGAATCACCGTCCTTATCAGACGATGACTCATACCTCGGGTCCTGCGAGTCAGAGGGGGATGAGTACGAGGAATACGACGATTTCTCGTTATTACCGGACAGTAAAAGTATCGCTTCGGACGACTCCTTTTACCCACCGGACGATGTGTTCGCGGACAACGAGCGGACCCCCTCTCCACCGAGTCCCGAGCCGCTGACGTTCTTCCAGGCGTGCTGCACCAACAACGCCACGATAGTCCGGATCATGATCCGACAAGGTGTGGGGgtagaggaggtgagggagacgGATAAAAACAACAGGaCGGGGCTGATGGTGGCGTGTTACCAGGGTTACGTTGATGTTGTCATAGCGCTGGCCCAGTGTTCTCACCTGGATGTCAACTGGCAGGACAAGGAGGGGAACACTGCCCTCATCACCGCTGCCCAGgcaggtCACATAATGATCAGTAACTACCTGTTGAACTACTTCCCTGGTCTGGACATAGAGAGGAGGAACTGTCATGGCTTCACTGCTCTGATGAAGGCTGCTATGCAGGGCAAGGTGGAGTGTGTACGAGCCCTGATGCTAGCAGgAGCTGACATGGAGACGAGAGACTTTGGTCGTAAGCTGACCTCCAGAGAGTGGGCGCTCTTCACGGGACGCTACGAAACCGCCTGGGCCATGACACGCCTCGTCTCCCGACCCTGTCCTTATCAACTGTGTGACGCTTACAGTCCAGAGTGGCCTCAGCTGGCGTCTCTAGTATCTAAGGCCCGGGAGCCTCGAGGCTGTATGCAGCGTATATCAGACACCATACGGAATGCTCTGACATTCGCTAACATCACAGAGCCTGACGACGGAGGAGTCTTAGATCACCTAGTCACCGTGACAACAGCCCTAGGGAGCCCCTTTGTGGCAGTGGCGTGTACCACCGTGTGTCCGTCAAGCCCGCCCTGCGTGGGTAAACGTCGTTACTCCGTCCCAGAGATCCTCCGACGCCAACGGGCCAAAGAACTGAAAACCCAGAACCCTGAGAGGCTCGACGACCACCGCAAACTCTTCCAGAATTCACGGGTCACTCTGGTGCCTAAACCCCCAAAGGATCGGCGGTCCAGCCTCCCGCCGCAGAACAAAAGCCCCACCACGACTAACCCTAACCTGGGTACAGTGTCTGGGTCCGTTTCCTCGGTGGCCCTGCGTAGAGCTAGCCTGCTGCCCCTGGGTATGGTGAGACGTAGTAGTGTACGACCAGGGCTGTCCATTCCCAAGGTGAGAATCACTAAGGCCCCAACGCCCACCTATGAACCTGAGAGAGTCCGCAGGAAGAGCAGCTTTAAAGACGGCGGGGGCAACTTCCTGCAGCTCCCAAAGTGGAGGTATAAAgaactgaaggaggagaggaagagagcggaggaggcagagaggaggagggtagaggtggCCACGAGACGGCACCTGGCTGTCGGGAAGAGGAAATGACACCACaagaggaagtgatgtcactCCACCCTTTCCTCCACTGTTGCCAGGCCAGTAGATAGTGTTCAGAGGGGGTTGGATACTTGAAATGATTGATGTTAACTTATTTTCGTATTTATTTCGCTTTCTTTGGAGTAAAAGTGACAGCGCTTTATTTTGTCATGCATTTCCTTCACAAAATCATCAGTATTTTAATAGGGTGATTTCTGTATTACCTGGCACTTACCCAGGTTACAAACCCATATGACTGACTACAGATAACGTTTCACTGATATCTGACGCATCACAAATGGAAACTTTCTTGCCTAAAATGATGACACAATAAGCGTCGGGGAAGGGTTTGAATGGGACAAATAAGAAGGGTTACAATATTGCGTAGCCTATAAAACCATTGAGTAAGCCTACCAGCATGTCAAACTGATTTACCGCCAAAGCTAAACATAAGCTTTATTTTATAAGCAATGGCATTTGTCTGAGCAATAGTAGTTTCTTTTTAGATAGGCACCATGGTATGTTTATATTGGCTTTTTGAAAGCTTTTTTAATTCTGTGAATGTATTTTGCATATagattgggccagtaaccgaaaggttgctggatcgaatccccaagctgacaaggtaaaaatctgtcattctgcccctgagcaaggcagttaacccactgttcccgggcgccgaagacgtggatgtggaTTATGGCAGCAgctccacacctctctgattcagaggggttgggttaaatgtggaagacatttcagttgaatgcattctgctgtacacctgactaggtatccccctttccctttcatcAGGTATTTTCAATAAGAGATATAAAGGTGGCTTTTTTGAATCACTTTTTATTTTCTACTAAAGTAGACATATTAAGAGAATGTGAATGAAATGGTTTTCAATGTCTGAAAGAAATATCCCAACGCTACACTATTGTGATGTGACACTTAAGGGCTTAAGCGATATACATTTtaaggtcatttccgattgagccgacatatgcagtgtttaccgtgaatgcagccTCTGCTAATACGAGAACATTGCTTTTGCATCACTTCCatgatacggattgaatagagctcaTTATCTGGAAGTGGGGGGGGAAACTGGAACAATATCCTGAAATGTTTGCATGTTATGAATGAGATCTACATATTGCTACACTGACCTCAGATCAGAGTGCTTAATACAATACAAACGTGTACTTCGATGACAGAACAGAGGTCAGAAGAGTAAGGAACTATTCCATGTAACTTGGTTCAGACATTTAATAGAAAATAATTGGATGAAAATAGCTGGAGGTATGAACATAAACAGCAACTGGAAAGCACTGATATTATATTATTATGGTAGGGATTGAAGAGAAGATCATTTCACGGTAACAACCCCAAGGACAGGACAGGAAGCTTTAAGTGCAATCTTCAAGTGTGTCTAATAGCCATGGTGATCAGTTGCTGTGGCGTTACCAGGGGGCAGTGATTGGCCAAATAATAATTTCTGTAAATAAATGGAGCGGGCTATGCAGGAGTGTAACACTGAAATGCTTCCCAGTGGAAGGTAATCTTAACTTGGAAATGACAAAGTGCATTTTTGGACTCGCCCCCAGACATATCGCTAACACTAACACTTTGCCCCATCTCCTCAAAGTGTTCACTGGTGGAAACTCTCTAAACACTCtgcttatacagttgaagtcagaagtttacatacacttaggttggagtcattaaaactcatttttcaaccactccacaaatgtcttgttaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1084851 lncRNA upstream 9568 18812408 ~ 18812766 (+) True G951340
TU1084812 lncRNA upstream 19493 18798174 ~ 18802841 (+) True LOC110535429
TU1084761 lncRNA upstream 95241 18717429 ~ 18727093 (+) False G951277
TU1084762 lncRNA upstream 95241 18719339 ~ 18727093 (+) True G951277
TU1084753 lncRNA upstream 145306 18649576 ~ 18677028 (+) True G951270
TU1084845 lncRNA downstream 465 18845356 ~ 18845789 (+) True G951335
TU1084867 lncRNA downstream 1281 18846172 ~ 18846434 (+) True G951352
TU1084868 lncRNA downstream 2080 18846971 ~ 18847197 (+) True G951353
TU1084880 lncRNA downstream 27960 18872851 ~ 18873196 (+) True G951362
TU1084885 lncRNA downstream 35841 18880732 ~ 18880991 (+) True G951367
XM_021620419.2 mRNA upstream 19463 18790170 ~ 18802871 (+) False LOC110535429
XM_021620415.2 mRNA upstream 19463 18790180 ~ 18802871 (+) False LOC110535429
XM_021620416.2 mRNA upstream 19463 18790184 ~ 18802871 (+) False LOC110535429
XM_021620420.2 mRNA upstream 19463 18790189 ~ 18802871 (+) False LOC110535429
XM_021620418.2 mRNA upstream 19463 18790191 ~ 18802871 (+) False LOC110535429
XM_021620425.2 mRNA downstream 453688 19298579 ~ 19310732 (+) False LOC110535436
XR_002475252.2 mRNA downstream 485090 19329981 ~ 19335648 (+) False LOC110535438
NM_001160571.1 mRNA downstream 497090 19341981 ~ 19345685 (+) True ssm4
XM_036935124.1 mRNA downstream 532244 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA downstream 532244 19377135 ~ 19385929 (+) False LOC110535439
TU1081800 other upstream 2220442 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2277045 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2487042 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2495927 16323350 ~ 16326407 (+) True G948587
TU1081677 other upstream 2611494 16209929 ~ 16210840 (+) False ccl20b
TU1085033 other downstream 281774 19126665 ~ 19127085 (+) True G951511
TU1086071 other downstream 916374 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3881662 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4820397 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4930881 23775772 ~ 23776845 (+) True G956797

Expression Profile