RNA id: XM_021620425.2


Basic Information

Item Value
RNA id XM_021620425.2
length 3116
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110535436
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19298579 ~ 19310732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAAAGTGAAAGCTATTGGAGTCAGTGACGGAAGTTAAGTATATTGTCATGCTGGCCAAGCAGGGAGATTGATAGATAAACAAGCCCGGCTAGTTATTATAGGCTTATTATAGCTAGAAAATAAAGGGATTTATTTCAGTAAGAAACACTACAACGCATGAACATTTTACTGCTGTATGGAAAACGCAACAACGCAGCCAGAGTGGTGGGAGTGGCACCTTTTTGTGAATATGAACCAAGAATGGTAGCCTACATACAAATGaatattCTTGGcatctctgtcttttctctcatGCTGCTACCTCTGGTGTTGTCTTGCGACAGCAACAGGACTATGAGAGAGATCGCTGAGGACTACGAGACTGTCATCTACCCGCTTCTTCAGAACCTTGAGAACAACATCACGGAATCGTTAAAAGTGGTTAATAAAACCTGCACGGAGAAGGAAATCGCTGAATGTGAGAAGGATAAAGAGAGACAGTTCATCCACAACATGCTGTGTAGCCATACCAGACTCATCAGGCTCTATAAGCTAGAGAGGCTCAAGAGAGACATCCTGTGCTCACTGGGCCGCCACTGTCCTAGAAAACAGAGGAGTTCACAAGGACAGAGCGCACACCATCAGAATAGAAAGAAGtcaggaggagaaagggaggaggaaaaCAAGAAAACTGAGGAGAACAGAGGGACcatggaggaaggaggggagagggtggaCAGTGGGAAACAGCAGAGACCAGATaaatgggagggaaggaggagcacAGAGGCGATGGAGCGGAGGAGGAGACGGTGTGGACAGAAGGTGTTTGTGGACAGCTTGAACGGGTGCTACATGTCCCTGGCTGAAAGATATGGAGGCCTGACATGAGAGGAGAGACGTGGCCCGGAGCTAACCGCACCAAGAACCAACAAACTTACTGTAAAGTGTATAGTTACTGTAAAGAAAACAATGATACCATACGTCCTGTAAAGTAGTATCGTCTTGCCAGACACTTACTTagaataaaagtgtctgctaaatattAATCCTATTATAATAGACAAAGGCGAAAATCTCTGTGGTACCCAACAAAGTGTGAGGTGTTCTATGGCGATGATGAAACTAGTGTCGTAATGATAAGTCTGTGGCACAGTGCAATTATgctaaagcaaacaaacaaagatGATTGAATGCTTGTGTACAAATGAAGTGCACTTTTGAGTAGAGAGACTTGTAGCTCATGATGTCCCTCTTTCTGCTGCAGTGAGTGGTATTGGGCAGTGAGCCTGGCCTCAGGTGTGTGACAGCGTTGCGTTATTATTATAGAATGGCAGTTTGAAAGCCTATTACGCCAAGGATGTTTGCTTTCAAGTCGGTGTCTTAACTGAAATCCACATTGGGCTACTAAAAACCTTCCCCAAAAGCTTCCTGTGAAATTCAACCAACGCCTTTCGCACAAGCCCTTATTTGATGAATGAAACTCATCTTGACCTGATTTCAATCTTTGTAGAGTAGTTTTCCAAGCATAAGGCACCATGATATCCTATGTTGTCTTATTGTAACTGTAGCATTGGTTTTAGTACTATTTATTTATATTCTGAAATCATATTGACTCAAGTGTTAACTGTACCCCTGTAATCATTTTATTGTGTAGCACTTAAATTATCCCCTTCATGTGTCAGTGCAAAATAAGAAGTTTTGATGTTGATGTGATCCTTAGGCCACTATAACTCTACATTAATAGAGTTTAAACTGCCATTGTGGTTttgcctgggtgccagtctgtttctgctgttGCCATATAACACTTTCAAAGCCTGGGGAAGAAGGAGAATATGTGCATTAATTACTCTGATCCTTATAATGTGACAAAGTGGTAGTTGTACATGCTAGCATGATTAATTGTGCATTTATATtgtaacattttattttgtttagtgttttgttgCTCAAGTATTTGATGAATAGTGTCTTATGTtgcattcataaccaagtgggaaggtggtaatTACTTGTTGTGAAGTCGTATTGAGTTGGATGCATTCACATGCTTTGAACTCGTTGAGAAAGCTGCGTCAAACCAGAAACTGAAAGTATAGCTATCATGcttaaacaaatgatagtcttcAAAAACAATACGAATAGATTGTTTCTTGTTGCATTTAACTGTTGAAAATGCCGTTAGAGGTCATTTCCTTAATAGGTGAAttcagcatgtgggagaagtggTAGCTCAGGGATCATAGacgagtttcccactagtaattgcGAGTTGGAAGGGCATTCCAGGGGATTTTTCCCAGTCGTATAGTCCTATGTACGAATTTATGAGGTCTTATATAAAGagcttcaaaataaaaaacaaaacaaccaatacatcatgagtagcTTAGCTAAAGTAAAGGTCAACTAATAGAGGTCAAGTCTTTGAGTGCATGTATCCTCCAAAGATGGAGAGGGGCTACTCTAGAGGGCTACTCTGGGAAACAGCCTAAGTCATGTAGCTACTGGACTTCTCCCTCACAATGTATGGCACCCACTTGGGTGAACCCCCAGCAGGTCTAGGCATCAGTCGTCCTCATTATGAGCCCTTTGCCTCAGCACTCCAATTCCTCTCAAGTGTGAGGTGACTCTTCAATTGATGTTTTCAAACTCCAAAGATCAGGAACCAGCAGCCAGGTGAAACAAAGAATCTGGTACAATGTCTAGATGCATCATTCAAACAAAAACAATgtgccagctaactagctagccaagcCAAAAAGAGCGGACCTGCCAGTCCATCTTCAAATCTGTGGGTTAAAACCCCCATGGATATGCAATAAAACTCAATGTTATAAAAAAAACagctgataaaaaaatatatatttaaaacactTACAAATGATGAAATATGTTCATATTTACAGGATCTCTCTGCTTAGGTTGCTACTGGGGCGCTATGGAAACTATAGAACTAATAATAAGCCCATTTGGGCTGGTCACCAAATGGTGTATGACATGgaaaacaaaaagaaaacaaacagATATCAGGCTGATTGTGTTATCCATGTGCTGTATGCTATGTGTTATACTCTACCAAGGactgtaaatatatttttatattcaactgcaaatatattttatattcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085151 lncRNA upstream 1020 19297355 ~ 19297559 (+) True G951627
TU1085148 lncRNA upstream 3792 19294394 ~ 19294787 (+) True G951624
TU1085147 lncRNA upstream 5853 19292516 ~ 19292726 (+) True G951623
TU1085145 lncRNA upstream 7894 19290464 ~ 19290685 (+) True G951621
TU1085144 lncRNA upstream 9319 19288856 ~ 19289260 (+) True G951620
TU1085623 lncRNA downstream 4868 19315600 ~ 19315953 (+) True G952064
TU1085633 lncRNA downstream 19281 19330013 ~ 19335646 (+) False LOC110535438
TU1085634 lncRNA downstream 19281 19330013 ~ 19335646 (+) True LOC110535438
TU1085660 lncRNA downstream 73812 19384544 ~ 19385929 (+) True LOC110535439
TU1085770 lncRNA downstream 289181 19599913 ~ 19600359 (+) True G952201
XM_036935118.1 mRNA upstream 453688 18822334 ~ 18844891 (+) True ankrd33ba
XM_021620419.2 mRNA upstream 495708 18790170 ~ 18802871 (+) False LOC110535429
XR_002475252.2 mRNA downstream 19249 19329981 ~ 19335648 (+) False LOC110535438
NM_001160571.1 mRNA downstream 31249 19341981 ~ 19345685 (+) True ssm4
XM_036935124.1 mRNA downstream 66403 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA downstream 66403 19377135 ~ 19385929 (+) False LOC110535439
XM_036935126.1 mRNA downstream 66403 19377135 ~ 19385929 (+) False LOC110535439
TU1085033 other upstream 171494 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 2696687 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2753290 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2963287 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 2972172 16323350 ~ 16326407 (+) True G948587
TU1086071 other downstream 450533 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3415821 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4354556 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4465040 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 5289739 24600471 ~ 24601653 (+) True G957942

Expression Profile