RNA id: XR_002475252.2


Basic Information

Item Value
RNA id XR_002475252.2
length 1671
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110535438
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19329981 ~ 19335648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCAACCACCGAACCATTGTGCCCAGCGCTCAAACGTCATGCCCTACGTGCGGCCACTGCGCCCGCCGTGCAGCAAGAAAGGTCCGGTTGCATCTGTAGACGCGAGTCGCGACGTAAATCACAGACGACAGTCGACTTCCTCATGTCGCTGTGTGATTGACCGTGCATAGCAGCTTCTGTTTGGAAGTCCTCAGCACACACAGGCCCTGCTATGTTGAGGTGTATCAGCTATGACTGATGTGGAGGCGACATATGAAGACTTCATCGCTTCACAGCGGACCGGCCGACGGAACGCCGTACACGACATCCCACAATCCCCTGAGGCACAGGGACCCAGCGACCTATCACACGACCTGGCTCAGCTCAACATCAACAAATCCGgTGAAGGAGAGGATGCTGAAAAGAGCCAGGCCCCGTCAGATTCTTCATCCCAACGAGGGGAGGGGGGTAAAGAGTAGGAGGGCTAgcagacgatcagtggtcatcaGTGGACAAACTGCTGCTCTTTTTCCAAACTTTTAATCTGTGAACTGATCTTTCACCCTACTATTGTCTAGTAGTCCCTCCCCAACTTCTCTCAAAACTATGCCCTGAGCCAATAATATGAATTGTTGGGTTTACTTAGGCAGCCGCAGCACACTGAGCCCTCTGTGCTGGTCCGCATCCCAACAGTCTTAAAAAGCTCCCTTTCCTTACCTACTTTCCTTCTAAACCACTGAAGCTGAAACTAGATAAGACCCCAGTTCcgattctcccctctctccttgaAGTGTGTACACTTCAGGGAAAGAGGAAGAAACGGAATGAATGGGAAGGAACAGAATTGGAGTAATATGGTACGACAGATGAAAACAATGTGGTGGAATCTTACCCATTGACTTTTCGGTGGTCCTTCCTAAAGGAAAGGAAGCCATTTAATGTGTTTGGGACGTAGCAGAAGATGTTTTCAATAGAGGAAGTTGAACTTGCCTAACCCGCCTTGGGGATTCTCTATGGTTACCACTCTAAACACAGAACTAAACTGTAACAATGAACAGTGATTGGACACTGACTCCAGCTCTTTCCTCTCTGCCCTGATGCCATTGGCCCAGGCCCCCTGTCAATCATGTGGACATCCTTACAGTAACAACAACCTCCTTTCACTCTCTAAATGATTGAACCTTCATTTATCCAAGTGATCTCCTGAGCTTGAGAACCTCTTTTACCAGAGACTTGACAAGGCACTGGGGTTGGAAACTAAAATGTCATATACATTGTCATGACGTGATAATTGGACACACTGACACTAAAAGATGGCCGTTAATTTCGCTGCACTGTTTTGCTTGTCTCCAACAGGTTTGCTATGTAAGCGTACACTGCTAGCTGATGTCCCCTCCATAGCGTGTGGCTGATCAGTGTGTTTACTGGTCATGTCCTGTCTCACCCACTGTACCAGGAATTGAGCTGTGACTtactcttttttttgttttgttttttgtctgTATTTCATAAAACAAGTTATTAATCCAAATTCATAGGCTACAATTTCCGTAATGGATTATTTAATCAGTTTGGATTAGTAACTCGTTACGAGAAGAACACTAGTTTTGAAGGTGAGACTGACATCTATGCTCGACGCCATTGTTGAGTTGTTTGTTTGGATGTACAAATAAAGATCATTCATCATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085623 lncRNA upstream 14028 19315600 ~ 19315953 (+) True G952064
TU1085613 lncRNA upstream 21689 19307438 ~ 19308292 (+) True LOC110535436
TU1085151 lncRNA upstream 32422 19297355 ~ 19297559 (+) True G951627
TU1085148 lncRNA upstream 35194 19294394 ~ 19294787 (+) True G951624
TU1085147 lncRNA upstream 37255 19292516 ~ 19292726 (+) True G951623
TU1085660 lncRNA downstream 48896 19384544 ~ 19385929 (+) True LOC110535439
TU1085770 lncRNA downstream 264265 19599913 ~ 19600359 (+) True G952201
TU1085777 lncRNA downstream 276143 19611791 ~ 19613762 (+) True G952208
TU1085801 lncRNA downstream 304993 19640641 ~ 19641471 (+) True G952229
TU1086054 lncRNA downstream 348134 19683782 ~ 19684639 (+) True chodl
XM_021620425.2 mRNA upstream 19249 19298579 ~ 19310732 (+) False LOC110535436
XM_036935118.1 mRNA upstream 485090 18822334 ~ 18844891 (+) True ankrd33ba
XM_021620415.2 mRNA upstream 527110 18790180 ~ 18802871 (+) False LOC110535429
NM_001160571.1 mRNA downstream 6333 19341981 ~ 19345685 (+) True ssm4
XM_036935124.1 mRNA downstream 41487 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA downstream 41487 19377135 ~ 19385929 (+) False LOC110535439
XM_036935126.1 mRNA downstream 41487 19377135 ~ 19385929 (+) False LOC110535439
XM_021620431.2 mRNA downstream 65874 19401522 ~ 19414736 (+) True LOC110535440
TU1085033 other upstream 202896 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 2728089 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2784692 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 2994689 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 3003574 16323350 ~ 16326407 (+) True G948587
TU1086071 other downstream 425617 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3390905 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4329640 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4440124 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 5264823 24600471 ~ 24601653 (+) True G957942

Expression Profile