RNA id: XM_036935124.1


Basic Information

Item Value
RNA id XM_036935124.1
length 4728
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110535439
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19377135 ~ 19385929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACACTCCCTTCGGTTTGGTGGAAGAGTAAAGATGGCGCCCACCCACGTATTGAGATGCTGTCAACGGGGCTTAGCTTGGATACCTGTGATTTTTATCGCCCTAGTCGTATGTTGGTCTTACTATGCGTACGTCGTAGAACTCTGCATTTTCACCATCCCCAGCATAGCAGAAAAGATCATCTACATGGTGTTCTTCCATCTGTCCTTCGTCATGTTTGTGTGGTCCTACTGGAAGACCATCTTCACCAGACCAGCCAACCCCTCCAAAGAGttctgcctGCCTAAGGCAGAGAAGGAGCAGTATGTgaaggaggagagaccagagtcGCAGCAGGAGATCCTGTGGAGGGCTGCCGCTAACCTGCCCCTCTACACACGCACCGGGGCTGgagCGATCCGCTACTGTGACCGGTGTCAGGTGATTAAACCAGACCGCTGCCACCACTGTTCTGCCTGCGACATGTGTGTGCTGAAGATGGACCATCACTGCCCCTGgGTGAACAACTGTGTGGGATTCTCCAACTACAAATTCTTTATTCTGTTCCTGTGCTACTCTCTGGTGTACTGTTTGTTCATTGCAGCCACCGTACTGCAGTATTTCATCAAGTTCTGGACACTTTGCCGGAGGAAATCGGCAGAGAACTGCCCCAAGaaTGAGCTGCCAGACACTCACGCCAAATTCCATGTCTTGTTTCTCTTTTTTGTGGCGGCCATGTTCTGCATCAGCATTCTCTCCCTCTTCAGCTACCACCTGTGGCTCGTAGGGAAGAACCGGTCCAccatagaGGCATTCAGGGCTCCAGTGTTCAGAACAGGTTCTGATAAGAACGGTTTCTCTCTGGGCTTTGGGAAGAACATCGCCCAGGTGTTTGGAGACAAGAGGAAGTTCTGGCTGCTACCCATCTTCACCAGTCAGGGTGATGGACTGACGTTCCCATCACGGCTTGTCAACATTGACCCAGAACAGCCCACAGTCAGCTTGCAACCAGAGGCCAATAAAAGTATTGAAGACGTCCCGGCCAGTCCTCTCAGCGAGTCTCAGAACCATCTCCTTGGCAACGAGCAGCATGCCAACAACGTCACAGAACACCTGGAGAATGACACTGGGAGTGAGACCATCACAATCATCATGGAGAGGGAGTCATAACAAGGAGAAGAAACCAGCCATCTAATATGATGCCTTAAGTATACCaccattttttcttttttttggcaCCATGGAAACAGTCTCCCAACGCGTCCCTGTAGTTCCGAAAATGTCACACTCAGCATAACCATGGAAACGGACTCCTTTCACGCATCACCATAGATGTAGCCTTGTCTTTTAATCATCAGAAAGTTACACACACAACTATTTATGCAGTTGCACAGAAGAACCACGCACAGCCTACTGTAAGCATATTTTTATTTTAGTTGACTGTGGCCCGATTGTCCACCCAGGACTGTTAATGGATCTCAGCATCATTTGATGATGGCAGGAATAGTAATCAGTCTTCACACTTCAGAGTGGAGGAGAATGCCTGTGCCAAAAGCTGACAGACTGGGTGTTAAATGGACCAGGGCTGAGGAAGGACCTGGACTGGGAGAAGACGAAATCTGAGCTGGGAGGTACTGGGACATAATAATTTTGTACAGATTTTTCACCCAACGTTTATAAAATGGATGTTATGAAGCTGGAAGATATCACCAAGAAACCTAATTTTGTTTACAAATAATTTAGGGGTGTTTGTTTGTACTATCGATAGACGTTACAAAGGGTGCCTAAAAGACAACCTGGACTATACAAAGAAGACCCATTGGAGGGGATGCTGGACTGAACCAATTTTAAAGTGAAATGGGGGGTCTCCAACCGGGTTTTGATCATGTCATCACACAACATGGCGCATTTGCACTCTCAAGATTACATTTTATTATCCATCATGTTCTGCATTCTtcatgtccaaaaacagattaagAAAGGTGTGTccttgagtgggtgtgtgtgtagtcagatttgtgaagagagggaaagagggagtgtCTGCATGAGTGTGTATGTAGGCAGATTTgttaggacagagagagagagtgtgtgtgtgtgcgtgcatgcaggTGCTTGCTGTAGCTAACAACCTAGAAGGATCAGCTTCAGATGTTAGTTGATGGATGGATTGATAGTTTGGTTTACATTCATTCCCAAGCTGCTGAAGGGTGTCTTATGTGAGAGTATACAGTATAGCCTCAAGCTCCTCAACCAGTTCTAGCTCATGGTCAAGTTATTACACGTTGATCAATGATTATTTTTAACGCATCAGAGACTACAACCTTGAACATCACTTTTTACGAAGGCTGTGTCTGAAATTACACCCTATTTCTCCATATagtgtacttttgaccagagctgtgTAGGGTTTGTGGTTAAACTTGTTTGTTAAATGGGGAATAGGCTGTGATTTGAGATCAGCCCGAGGTCACCATTCATTGCCAAATAAAGggctgaccaatcagctgctCTGACCTCTGAACTGGGAGTGTTTACAACACCAGATGCCATAGAATTAGAATCATAGACCATTGAATGGGAATGTCCATTTTAGTATTCTAGTCATTCTAGTTCTATGCTTGATACATCTCTGCTCTCACGTCATTGGCCTGTGTCATGGAAACCAAATTTAACTGCTTATCGTTGTGACTTGATGTTTTTAAGGTTTACCCATATGTGCCCAGTGCCTAACTGTTGAGGCTTGGCCACCCTGCGGTACTGATGCTGGCCAGCAGGTGGTGACACCTCTCAGCTGTCTAGCGACCTTCTGTTGTACAGTACTTGTTGTTCCTCCAAAACGAGGTGCCTCACAGTTTAGGTCTAAAGTGGACCAGTATGTATTATATGCAGTAAGATTCCCTGTGATGTGAAAGTGTTCGGGGCTCAGTTTGCGTGAACTGTGAGGTGGTGGTGTAGTGTGTCCATGTGTCAAAACAGCTGTGATTGGAAGGTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGAATCTGTCAGTGACGGGGGTGGACAGaatctgtgggggggggggcatattttCCTCAACTGGTTTTAGATAAATGGAAAAGCGTTTCAAAACTTTACAGTTTTATCctcagttgaagtcaaaagtgaAGACAACCGTTATAAAGGTAGTGATATAGGACATTTCCCGTAGATTACTCCTGGCCATAGCAATGTACAAGTTTACAGACCAGAGGTGTGGGTTAAGATAGTTGTAGGCATAGGGGTGTGTGTCATTGCATATTGTGGTTTAAGTTCTGAATGTAATAAGGAGGGATAATGATGATATTTTCTACAGTTATGGAACCCCTACCTCTAGGTTCTTGTGTAATTCTGGAACGATTGGATAGGTATAAGCAATATGGTGAAAAGCTACCACCATATTGCTTATACCTATCCAGTCCTTTGCATCTCGACAAGTGCTCTTGGTTGAGTGGCAAGGGATCCAATTTGGAATGAGGCCTTTTGAACCTCCTCTAGTTGTTCTTTCATTCTAGTTTGAACTCCTGACCCCGGCGATGGTCATTGTTTGTTTAGCTCCTCCCTCATAAACCAATGAACCCGAGACAGGATTATTTCACTCAGAATGGTGACCTTGGTTATACTGAGGTAAAGTTGCTACCGGACAAGGTTTATAAATTCACTCTGCTGGAACTCTGAATAGTTATCCCTGTGTTCTACACTTTGTGTTCTAGAACCCATAATTAAAATGCTGTTTCTTTTCATATGGTCACTATTTTTTCTACCTAATAGATTTACTTACAGCTACACTCTGAACTACTTGACCCAGAGACTAAGAACTCGTTGTTTGACATTAATTGGAGTGCTCTGTTTTAATTCTGGGAGAATACACTTCATTAAACATACGTGGCCTTTACATTAGATTTTGATCAAAGTCTGTGTAAATAACATGCGGCTCATCAGCATGGAGCTCAGCTGGAAATGTGTTTATGGGGATAGATGGGAGGTTGTGGTGTTAAAACAGCCATATTATTTATACAACTAGATCCATTTAGTTTGACCCTACAAGACTCCATCAACTGTTCCCACCATTATACCTGAATCCACAATAATGACTCCTGTCAAAACGGAAGAAGATTCGGATCATTCTTGTCATATTTTAGGGGGGTTGATTTGACTAACCCACACCCATGTGTCTTCTGCATGTACAGTGCAGATGTATTTGTACTCTGCTTATTGCAAGCTTTGACCTATCATTTTTTTCAATGTCATGTTTTACAAAGTgtactgtgtgtaatatatatatatatatattgataatgtaaaaaaaaaaaaaaaaaaaggtgtcaGCCTATCTATTTTTCTTGTCTGATTTTAATTTTTCCTGTTCCTATTTTGTGAATGAAGTACATGCCTCTATAAACTATTAACgtgaaaaaaataacaataaatgttttttaaaaccTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085633 lncRNA upstream 41489 19330013 ~ 19335646 (+) False LOC110535438
TU1085634 lncRNA upstream 41489 19330013 ~ 19335646 (+) True LOC110535438
TU1085623 lncRNA upstream 61182 19315600 ~ 19315953 (+) True G952064
TU1085613 lncRNA upstream 68843 19307438 ~ 19308292 (+) True LOC110535436
TU1085151 lncRNA upstream 79576 19297355 ~ 19297559 (+) True G951627
TU1085770 lncRNA downstream 213984 19599913 ~ 19600359 (+) True G952201
TU1085777 lncRNA downstream 225862 19611791 ~ 19613762 (+) True G952208
TU1085801 lncRNA downstream 254712 19640641 ~ 19641471 (+) True G952229
TU1086054 lncRNA downstream 297853 19683782 ~ 19684639 (+) True chodl
TU1086102 lncRNA downstream 342554 19728483 ~ 19730374 (+) True G952509
NM_001160571.1 mRNA upstream 31450 19341981 ~ 19345685 (+) True ssm4
XR_002475252.2 mRNA upstream 41487 19329981 ~ 19335648 (+) False LOC110535438
XM_021620425.2 mRNA upstream 66403 19298579 ~ 19310732 (+) False LOC110535436
XM_036935118.1 mRNA upstream 532244 18822334 ~ 18844891 (+) True ankrd33ba
XM_021620420.2 mRNA upstream 574264 18790189 ~ 18802871 (+) False LOC110535429
XM_021620431.2 mRNA downstream 15593 19401522 ~ 19414736 (+) True LOC110535440
XM_021620433.2 mRNA downstream 29193 19415122 ~ 19426756 (+) True LOC110535441
XM_021620436.2 mRNA downstream 81013 19466942 ~ 19561386 (+) True pola1
XM_036936650.1 mRNA downstream 212522 19598451 ~ 19611053 (+) True hgd
trnac-gca-2 mRNA downstream 243411 19629340 ~ 19629411 (+) True trnac-gca-2
TU1085033 other upstream 250050 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 2775243 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2831846 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 3041843 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 3050728 16323350 ~ 16326407 (+) True G948587
TU1086071 other downstream 375336 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3340624 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4279359 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4389843 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 5214542 24600471 ~ 24601653 (+) True G957942

Expression Profile