RNA id: XM_021620431.2


Basic Information

Item Value
RNA id XM_021620431.2
length 2348
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110535440
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19401522 ~ 19414736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGATTTCTCTGAGTTTGCCCGCAGTTGCAGTCCAGAGGTGAACTGCAGCCCATGTTCCTTGCAGCATTCCAACATCATTTATTTTGAGATTTTCTATCAATATTGACATTGCTGCCAACTGAGTGCATGTGGGTGGTAGAGGGACAGAGCACGGATAGATAGTTTTTTGTTTTCGTCAACGGCGCCCTCTCTCTACTCAGACCGGCTGAGGATGGACGGGAACAGAACCATCGACCCGAGCTGCAGGGACAGACCTCCCGTGGCCATCGACATAATTTCCCaGTTGGACATATTTGGTATCATCCTGTACTCTGTGCTGACCTTCATGGCAGTGGTGTCCATGCTGGTCTACATAGAGGAGTGTTGGTACATCTACCGGAAGGTTCCCTCCCACAAGAAGAGCGCCATCATCTGGGTCAACGGGGCAGCGCCGgtgaTCACCACCATGTCCTGTCTGGGGATGTGGATTCCCCGAGCCACCATGTTCACTGACATGACCTCTGCCTGCTATTTTGCGATCGTAGTGTTTAAGTTCCTGGTGCTGATGATTGAGGAAGTGGGGGGTGACGAGGCGTTTCTACGGCGAGCAGGGAAAAACAAACTGAGGATCAGTACTGGTccctgttgttgctgctgcccCTGTCTACCCCATGTTAACATCACACGACGGAGTCTGTTCCTGCTGAAGTTGGGATCGTTCCAGTTTGCCGTGCTAAAGATCGCCTTCACCATACTATCAATCATCCTCTGGACCAATGGCAACTTCGACATCGCAGATatgGCGATAACGGGAGCAGCCATCTGGATTAACCCAGGTGTGGGGGTCCTGACCATCATAGCACTGTGGCCTGTAGCCATCATGTTCATGCACCTCAGGATCACACTGCGCAGCCTCAAGATCATCCCCAAATATGCCATGTACCAGctggtgcTGGTGCTGAGTCAGCTCCAGTCGGCCATCATCAACATCCTGGCTATGAATGGAACCATCGCCTGCACGCCACCATACTCCTCACAGGCCAGGGGATATTtgATGAGTCAACAGTTGTTGATCCTGGAGATGTTCATCATCACCTTGGTAACCCGCCTGTTGTACCGGCGCCAGTATGACCCACTCCCTGACGACGAGAATGACGATGAACACACCAAGATGGCTATACCGGCTGATAAATCTGACATAGCGTGAGGGCAAGAGAGACTGTATCTGTGCATGTAGTAGAGACAAAGTGTGCGTGTGGTTTTGTTAGAAAGACTGTGTGTTCAAGAGAaagagtatgtgtgtatgttatgtTACACAGGTCTGCAGTAAGCATTTAATCAGTCATGGCATTTTCTGGGTGAGCAATGCTGTTAAAATGAATCAGAAGTCATAATCCCTCAGCCAGTGTGTTTGGAAAGTGTTGCTATTATGTAACTGTAATCTAAGAATTATTTCAGAAATGTATTTTTCCTCAGAAGTTGTATCTTTTGCCATAGCCTTGTTAAACATTATAGTGTATTATCATGAGCCATTTATaatatatacattttgaaacatttGCTCTAAAGATTTGTTTTGGCATTTGTTTTTTCATAGGCATGCATACACATGTATTTGTAAAGAGGAACCCTGTATTCATTGTAGTTGCAAACTTGCTCCACTAGGTGGCCGTATGAACCAATGGGTCCACCTGCCAGTGACACTGAGCAGTGGCCTACATTGATAACATTTGGATAAGGCCATTCTATCATGATCATTGACAGatcaacacagacacacctcTTTATTCTCTCGTCTTTAGACCTTCATCTTGTGGAATCTGCGTTATCACAACCCAGATGCACTCTGCAGATCAGGTTTAGAACTCTAGGTGACCATACTTACTAGTAACAAATGGTAGGTGCAAATTGAAATGTTAAATCATTTTTCTAATTTGTATTATTGTAAAGGATAATTAGTAGATTACTTTGAACTGTTCCAAGCTCTACCACTTTCTAGTTAAGGCTACTgtatccagtggtgtaaagtacttaactacttaagtagtacttaaaatACTTCtttttttggggaggggggggtgtatctgtactttactttatttatatttttgagtagttttacttcaccacattcctgaagaaaatgtactccatacatttcccatgacaaccaaaagtacttgttacattttgaatgctaagcaggacaggaacattgtCAAATGCATGCACTTAACAAGAGaacactggtcatccctactgcctctggcctgtCTAACTGACTAAACATAAttgcatcttttgtaaataatgtcttgcgtgttggagtgtgccttgcaatacaaacattttaaaaacatgaaAA

Function

GO: NA

KEGG:

id description
K14360 OSTALPHA, OSTA, SLC51A1; organic solute transporter subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085660 lncRNA upstream 15593 19384544 ~ 19385929 (+) True LOC110535439
TU1085633 lncRNA upstream 65876 19330013 ~ 19335646 (+) False LOC110535438
TU1085634 lncRNA upstream 65876 19330013 ~ 19335646 (+) True LOC110535438
TU1085623 lncRNA upstream 85569 19315600 ~ 19315953 (+) True G952064
TU1085613 lncRNA upstream 93230 19307438 ~ 19308292 (+) True LOC110535436
TU1085770 lncRNA downstream 185177 19599913 ~ 19600359 (+) True G952201
TU1085777 lncRNA downstream 197055 19611791 ~ 19613762 (+) True G952208
TU1085801 lncRNA downstream 225905 19640641 ~ 19641471 (+) True G952229
TU1086054 lncRNA downstream 269046 19683782 ~ 19684639 (+) True chodl
TU1086102 lncRNA downstream 313747 19728483 ~ 19730374 (+) True G952509
XM_036935124.1 mRNA upstream 15593 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA upstream 15593 19377135 ~ 19385929 (+) False LOC110535439
XM_036935126.1 mRNA upstream 15593 19377135 ~ 19385929 (+) False LOC110535439
NM_001160571.1 mRNA upstream 55837 19341981 ~ 19345685 (+) True ssm4
XR_002475252.2 mRNA upstream 65874 19329981 ~ 19335648 (+) False LOC110535438
XM_021620433.2 mRNA downstream 386 19415122 ~ 19426756 (+) True LOC110535441
XM_021620436.2 mRNA downstream 52206 19466942 ~ 19561386 (+) True pola1
XM_036936650.1 mRNA downstream 183715 19598451 ~ 19611053 (+) True hgd
trnac-gca-2 mRNA downstream 214604 19629340 ~ 19629411 (+) True trnac-gca-2
XM_036935132.1 mRNA downstream 258207 19672943 ~ 19684640 (+) False chodl
TU1085033 other upstream 274437 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 2799630 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2856233 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 3066230 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 3075115 16323350 ~ 16326407 (+) True G948587
TU1086071 other downstream 346529 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3311817 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4250552 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4361036 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 5185735 24600471 ~ 24601653 (+) True G957942

Expression Profile