RNA id: XM_021620433.2


Basic Information

Item Value
RNA id XM_021620433.2
length 5086
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110535441
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19415122 ~ 19426756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAACTGCTTACAGACCCGCCCCTTTCTGGCAGACAGACCAACACTTCAATCGCTATCTCCCATTTTCTCTTTTCCGGGTTTAACAGAGCAAGTGTCGACCAATCACCGTTAAACATCAACAGATTCAGAGTCATGCGCGATTGAGTTAGGGCTCGCGACAGTACGTACTGTCCTGTGCAACAATATTTAATCGAAGACATTCCGGAAAATAGAAGTGTTACATATTGTATGATTAAGCTACAGTAACACTTTTAGTTATATCGTTCAGTGATTTGCAGGTCTAGACAGAGAGAAACGTCAAATGAAGACGTTGTCTGTGGAGGATGCACGTCGCTGTCAGTGTCATTGGATGTGGTGGAGTGTTTTTAATTTAACCATCATCATTCCGGAACGACATCTACAATAGCAACTTTTCACAATGAGGCTGTTTACGGTTTTAttgaaaaacaccaaaaaaaTTGAATATTATTCAAGATTTTCACCGTCCCCTCTCTCCATCAAGCAATTTTTGGAATTTGgTCGGGACAATGCGTGTGAGAAGACATCCTTTATGTTCCTGAGGAAGGAGCTGCCGGTGAGGCTGGCTAACACCATGAGAGAGGTCAACCTGTTGCCTGATAACCTGCTCAGTCAGCCCTCAATCAAACTGGTGCAGAAATGGTACATGCAGAGCTTTGTGGAGCTGTTGGGTTATGAGAACAGAAAACCAGAGGATCCTCAGGCCCTCAATGAtttcctAGAGTTGTTGATCGAGATCCGTAATCGTCATAATGACGTGGTCCCTACCATGGCCCAGGGGGTTATAGAGTACAAGGAGAAGTTTGGCTTTGACCCCTTCATCAGCAGTAACATCCAGTACTTTCTGGACCGCTTCTACACCAACCGCATATCCTTCCGCATGCTCATCAACCAACACActcTCCTGTTCGGCAATGACACTAACCCAGCCCACCCCAAACATATAGGCAGCATAGACCCCACTTGCAACGTGGCTGAAGTAGTCAAAGATGCCTATGAGACAGCCAAGATGCTGTGTGAACAGTACTACCTTGCTGCCCCTGCACTCCAGATCCAAGAATTCAACATGAAACAAGACAAAGACAAATCGATCCATGCTGTGTATGTTCCCTCTCACCTCTTCCACATGCTGTTTGAACTCTTCAAGAACTCTATGCGGGCCTCTGTGGAGCTCCATGAGGACAGTAAGGAGGGCTTACCTCCGGTGAAGGCCAAAGTCACACTAGGAAAAGAGGACCTGTCCataaagATCAGTGATCGGGGTGGAGGTGTACCTCTGAGGAAGATCGATCGTCTGTTTAACTACATGTACTCTACTGCGCCCACGCCCAGCCTAGAACCCTCCAACACTGTCCCActgGCTGGTTTTGGCTATGGTCTTCCCATCTCCAGGTTGTATGCCAGGTATTTTCAGGGAGACCTGAAGCTCTACTCCATGGAAGGGGTTGGCACTGATGCTGTCATTTATCTCAAGGCTCTGTCCAGTGAGTCGTTCGAGCGCCTGCCCGTCTTTAATAAGTCGGCATGGCGACACTACCAGACCAGCCCTGAGGCAGACGATTGGAGCAACCCGAGCAAAGAGCCACGAGACACCAGCAAATCAAATTACAAGGCCAACCGATAACTCTGCCCTAAAATGCTTCCCCCGCCCACCTGCCTGGCACACTGAACTCTGCCCCTTCAATGATCCCCTCGCTAACAAAATCATCATGGGTTTAACTTCAGCTGCCGCGGCGACACAACGCCCTCTCTGCAGTCATTGATGTTGTTGTCCCAGGGTGGACTTTGGAACAGGATTTTAGCCCCACCCCCTGACTCCTCTGATAGGTTATTTGGTCAGTTGTTCCTCTTCACAATCTGTTTTAATTGGGACTACAGCGACCAGATTGGTGGACAGACAGTCAGTTTGAGATGGTTGAGTTCAGCCACTCTTTCCTTCGATCCCTTATCTTCAGCTTTACTGACCACAGCACTCCCTTGTGGTTCTCTCTAGCTACTGCAGCTAGAGGCTCTGTCTTTGGGCTGGGAAAGGTTTCTGttctgctctctctgtgtccagtCTCGGTTTGTTCAGTCAAACATAATAgaacctctgtttctctcttctctcccctacaaAGCAGCTGTGACAGGCTGAGGGTTTGGTTTCAGGCCCGACAGAGAAAAGGGAAAAGGAGCTCCTTTTCTCCCTTTGAGGACATAGTTTTGAATGGGCACTAATCTCATCCACCGGCCGGCGCTCTCTGTCGATCCGTCTGGTCTCACAGTGCCTCAGAATGGAACTTGAATGGGAGACTATGGTAGGAGTGGCGAAAACAGACGTCGATTTTAATTGGCTGATCTCTGTCCATCGCCATCTAGCCCAACCCTGAGAACATACCCCAGCTACATTGTGGACTTCAAAGCGTTAGTGATTTAAAGAAGGAAGTGAGTTCGGAAAATCTGAAAGTATGCCTATTAGAAATTGTTTTCATATATAAACTTTATACGCCAAACTCAGAATCAATTGAGTTTCCCCAAAATAATATTGTTTATGTAatagaacatttattttgattgacAATTTTGCAAAGTCCCAGCTAATAAAACGGTTGATAGTTCTCACTTCCTTTCGGTTACCACTAGCTTCCACTGTCACAAAGTCAACATTGACTTTAAAAATGTACTTtgtggtcttaatttaaggttagggttaagcatAAAGTTAGCagtttggttaaggttaggtttaagaaGAGACATTTTAGAGATAAGCAGGGTTtaagactttgtggctgtgataaCTAGTGACGACCCTCTCCTGCCTCAATTTAAAGACATGCCTCATAGTTGTGTGATTCGCTTAGAATTTGACTTGATTAGCATGGCACTCAGTAAATCAACACCCCCTAAGGTCTAACCAGTCCCACCTTATTACGGTCCCTGCAATCTGGagtccttgggacgtccctaccccaaTGAAGTTTAAATGTAAAAGGGTTAaggtagggacatcccaaggatcccagatagcaatGACCACCCTGTTACCAGACTATGTGTGCCAGCAATTCGACCCGGGCACGAGGTTAATTAGGCACAAAGAGGGTCAGGGTGGGTAGTTGTCATAGTTACGATTGTCATGGGTGTGGCTGATGCCAAGTTATAGAAAAGAGAGTTGCAGTGACTAACTAGACCTATAAGAACATTTTAGGAACGATGGGAACAAGCTTTAAACTAACTAAAGATAGTTATTATGCATTACGCATGTTGCATTATATTATAGAAAGAATCCGGAACAAACAGATGTATTTTTCATTCATTATTATTCCATTATCTCAGAACGAGGAGGAGACTTAGAACTCTGAGGAGTTAAGAAACAGTATTGCATGACAGTATTGCTATAGTTTCATTTCAACTCcattgttttattatgtttttacTGTGTTGTGACGTGTTGGATTGAGAGGAGAACCTAGTGAAATAGGCATCCTCAATCTTTGCCCCAGATCCTAACCAGCGATACTGACCCTTCTTGAACCCTTTGAAAGGTtaactgtatactcagacagccCACCTAGCTGTCTTGCCCCCTTTCTAAAAACCTTTGATGTTAATTGGTTTCTATTGGACAACTTGGTTCCCCATGTAGGAGGTTTTCTATGGGAAACACTGCTCTGAGTCTCAAAGAAAATGGATGTTTTCAGGATGCTAATGTTAACTAACGATGGTTCACCATGTGAGCCTTGTCTTTCCTGTAGCTTATTGCTTATAAACCTCTCCAGCATTACATGTGTTACTGTTAACCCTCCCAGCTCCTTCCACACCCTGATAAGACCATGCAAAGGCTACATGACCGATCCTAAAGATGGCTACATTCTGTTAGCCTTGTTTGTCCATCTGTGGCACCATCAACCCTGCAAAGCAATATGAACATTCTCACGTTAACCAAGACTATCGCTAACAACGCCACACCGACTCAACCTTGTAATTCACCTAGTAGTGGTATTACTAAACCTTCTGAACATTGAACGAGCTTGAACATCAACTAGTATTTTGAATGGTTTTCCGATAAGACATGTAATAGCTGTCATTGGTTGAAGTGTGTGAATAATGCTCTTCAAGGATGGAAGGGATTGGATGAGATTAATATTTGTATTTAAGTGTCAAGAagaatctgtggcattgtagtgGTGTACAACAGCGGGCATTTTGAAACTCCATTGTTTGTGCAGGAGTATGGACCTGAACAAATATATTGTGTTCCTTGAAACAAGGGTTCTTTTGCATAGGAAAATGGTTGATTCTTGATCATTTGTTTTTTACTTCAATTTTTTAGCATTTATTTTTGTGTAACTGGATGATTATTCCAGAGAGGGCTCTTTCCCTCTTTTTTTTGGATTTTAAAAGTcatcatctacagtatacacataccGTTTTTCTTCATCAATGTCTTCGTATGTGGATTACATTTCATTCAGGCCTCTCTGATAAGAATCAATTGTCTTAGTTAACTCTGGGATAATATtagcttgtttgtttgtgtttctagtTATCCTCATTGGCCGGTTTATGAAAAGTGGGGCCAAACTTGGACCAATCATGGAGCGCTGATCTGACAtcatccattctcagttttcagCAAAACCTGAACAACTCATTCCAGCACTGCCAAGGAGGCACCTAAAATGAGTTTTAAAGTGGGCTTAGCTGTAGATAAGGTAGTGAATCCTTCCTTACCTTTTTGTACCTCTAAGGTATTAGTAGCTTATATAGTATGATAATATATGGAACTGGTGTGAAGTGATTACTCATACATCCTTTCTGTATCTCTGATGTAAGAGATGACTGAGCACTTTgtatgacctcctccctgtagagcAAGTGTGTGCAGACGTATGCAGCCCATCTTATCACAAAACAGTAACTTTTGTATGCATACATGTGCTACAGTAGCGGCTACCGTAGATAGACACAGTGATATACAACCATATAGAGGTATTCAGCATGAGGTCAAGCTTGCAATACCTACTGTCAATTTTCCAAAGCTACAATAAAGAGAACAAAACAGACAGTTTTTTTTCCTA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085660 lncRNA upstream 29193 19384544 ~ 19385929 (+) True LOC110535439
TU1085633 lncRNA upstream 79476 19330013 ~ 19335646 (+) False LOC110535438
TU1085634 lncRNA upstream 79476 19330013 ~ 19335646 (+) True LOC110535438
TU1085623 lncRNA upstream 99169 19315600 ~ 19315953 (+) True G952064
TU1085613 lncRNA upstream 106830 19307438 ~ 19308292 (+) True LOC110535436
TU1085770 lncRNA downstream 173157 19599913 ~ 19600359 (+) True G952201
TU1085777 lncRNA downstream 185035 19611791 ~ 19613762 (+) True G952208
TU1085801 lncRNA downstream 213885 19640641 ~ 19641471 (+) True G952229
TU1086054 lncRNA downstream 257026 19683782 ~ 19684639 (+) True chodl
TU1086102 lncRNA downstream 301727 19728483 ~ 19730374 (+) True G952509
XM_021620431.2 mRNA upstream 386 19401522 ~ 19414736 (+) True LOC110535440
XM_036935124.1 mRNA upstream 29193 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA upstream 29193 19377135 ~ 19385929 (+) False LOC110535439
XM_036935126.1 mRNA upstream 29193 19377135 ~ 19385929 (+) False LOC110535439
NM_001160571.1 mRNA upstream 69437 19341981 ~ 19345685 (+) True ssm4
XM_021620436.2 mRNA downstream 40186 19466942 ~ 19561386 (+) True pola1
XM_036936650.1 mRNA downstream 171695 19598451 ~ 19611053 (+) True hgd
trnac-gca-2 mRNA downstream 202584 19629340 ~ 19629411 (+) True trnac-gca-2
XM_036935132.1 mRNA downstream 246187 19672943 ~ 19684640 (+) False chodl
XM_021620443.2 mRNA downstream 246190 19672946 ~ 19684640 (+) False chodl
TU1085033 other upstream 288037 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 2813230 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2869833 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 3079830 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 3088715 16323350 ~ 16326407 (+) True G948587
TU1086071 other downstream 334509 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3299797 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4238532 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4349016 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 5173715 24600471 ~ 24601653 (+) True G957942

Expression Profile