RNA id: XM_021620436.2


Basic Information

Item Value
RNA id XM_021620436.2
length 5647
RNA type mRNA
GC content 0.51
exon number 37
gene id pola1
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19466942 ~ 19561386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACTCCGGCGATATTCTGATTGGCTGCTTTCTTTTTGCGTCATTTCCTGCATATGACTTTCACCGGGAAGGAGCTTTGGCGCGAAATCTTCTGTTGTGTTGAACTGTGAAGCTAGCTACCAAAAAAAAGAGCTGAAGGTTATCAATATATTTGAAATAAATAGCAATGTCTCCGGTTTCTAAGCCAGAAAAGGACGTGGACAACCCGGACGGCGAGAATGACTGCGGCCTGGCAGTGGGTCGCTCCaggagggagaagaaggagaagacagggaggaaGTCAGCTCTGGAGCAGCTCAAGAGAGCCAAGAAGGGAGAGAAAGTCAAATATGagGTGGAGGATTTGACCAGTGTGTATGAGGAGGTGGATGAGGAACAGTACTCTCGGATGGTGAGAGAAAGGCAGGATGATGACTGGATCATTGATGATGatggcACAGGGTATGTGGAGGATGGGAGAGAAATCTTTGATGAGGATTTGGCAGATGATGTGTTAGAGAAAGGCGCCAAAGgtaAAGCAGGCGCTAAGGGAGCAGACTCTAAGAATAACATTAAGAAGGCAGCGGTGGCCAAACCCAACAGCATCAAAAACCTCTTCATGAACAGCAACGTTAAGAAACCTGCTGAGAAAGATGTGGACCTGTCCAAAGATGACCTACTAGGGGACATTCTACAGGACCTGCACTCTGATAGGCCGTCACCCCTGACTCCTCCGGTCGTCACTCTGAAGAAGAAGAAGGCCCTCGGAACTACCATGAACCCCTTCTCCATCAAAACTCAATCCCCTAAgGAGTCTCCATCTGCCCAGGGGTCAAAGGTGAAACACCCTCCTCCTGGTGAGCTGACTCCCCGGGTGCCTTCCCGCCTCCCCACCTCCAGGCCCTCCGTCCCCgtggagaagaagagagtgaAGGTGCAAGAAATTGAGGAGGagGACAACTCTCTGCAGTTTGACGGGGTGGACTTTGACGAACCCATGGAGGTGGGGCTTGAACAGGAAAAGGAGGGGCCTGCAAATGAAGAGGAGGAGCCAGAGACCAAACCAGCTGTTAAAGTGGAACCCAAAGCAGAACCACAGGACCTGGTcctactGAGTGGCAAGCTGGGGGGGACTTGGGGTCAGGAGGAGGGGGACAGTGAGGCCCCCGTGGAGGTGCAAGTCGACCCCAGCCGTCTCCCATTGGCCGAGGGGCCAGAGGGAGAGCTCATGTTCCGCTTCTATTGGCTGGATGCCTTCGAGGACCAATACAGCCAACCAGGTGTGGTGTACCTATTTGGTAAGGTGTGGATCGAGTCAGCCAAGGCCCACGTCAGCTGCTGTGTGTCAGTGAAGAACATCGAGAGGACCATGCACTTCCTGCCCCGCGAACACAAAGTGAACCCAAAGACAGGCgaggagacagacactccggTGGGGATGATGGACGTCTACCAGGAGGTCAATGACCTCTCTGAGAAGTTTAAGATCATGAAGTTCAAGTCCAAGAAAGTGGAGAAGAGCTACGCCTTTGAGATCGCTGACGTCCCTACAGAGTCCGAGTACCTGGAAGTCAGATACTCTGCTGAGTATCCGTCTCTGCCCTCGGACCTCAAGGGTGCGACTTTCTCCAAGGTGTTTGGAACCAACACCTCCAGCCTGGAGCACTTCCTCCTCAGCAGGAAGATCAAAGGACCCTGCTGGCTGGACATCAAGACCCCACagttGAGCAGCGTGCCTGTGAGCTGGTGTAAGGTGGAAGCAGTGGCGATGCGTAGTGACCTGGTCACTGTGGTCAAAGAcctgcctcctccacctctcactGTCATGTCCATCAGCCTGAAGACTGTACAGAACCCCAAGACACACCACAACGAGATTGTGTCCCTGGCTGCCTTGGTCCACCACAGGTTCCACCTGGACAAGGCCCCCCCTCAACCCCCCTACCAGACACACTTCTGTGTGGTCAGTAAACCCAACGACTGTATCTTCCCTTATGACTTCATGGATGCCGTAAAGAAGAAGAATGGTAAGGTGGAGATAGCAGCCACTGAGAGAACTCTCCTGGGATTCTTCCTGGCCAAGATGCACAAACTTGACCCTGACATCGTGGTGGGTCATGATATATTTGGCTTTGACCTGGAAGTGCTCCTTCAGAGAATCACTGTGTGTAAGGTCCCCCACTGGTCCAAGATCGGACGCCTCAAGAGGTCCAACATGCCCAAACTAGGGGGTCGCAGTGGCTTTGCAGAGAAGAGCGCCACCTGTGGCCGTCTGGTGTGTGACGTTGAGATTTCAGCCAAGGAGCTGATTCGCTGTAAGAGCTACCACCTGACTGAGCTGGCTGCTCAGGTGCTGAAGACTGAGCGAGCCACTATACCTGCTGAGAACATCAAAAACctctacagTGACTCCCCCCACCTGTTGTACTTGTTGGAGTTGACATGGACAGATGCCAAGCTGATCCTCCAGATCATGTGTGAGCTCAACGTGCTGCCTCTCGCCCTGCAGATCACAAACATAGCAGGCAACGTActgtCTCGTACTCTGATGGGGGGTCGTTCTGAAAGGAATGAGTATCTGCTGCTCCATGCCTTCCATGACAAGAACTACATCGTACCTGACAAACCCTCCTTCAAGAAGGCCCAACAAGAACTGgcagagggagaggaggagggggattcTGGGAAAGGGAAGAGTAGAAGAAAGAAAGCAGCCTATGCAGGTGGACTGGTACTGGACCCCAAAGTGGGTTTCTATGATAAGTTTGTGTTGCTGCTGGACTTCAACAGTCTGTACCCCTCCATCATTCAAGAGTTCAACATCTGCTTCACCACCGTACAGAGAGAGGCCCACAGCACACGCAAGaagactgagGAGCATGACCCTGATGAGATTCCAGAGGTTCCGGACGCCGACCTGGAGATGGGAATTCTGCCCAAAGAGATTCGCAAGCTGGTGGAACGACGTAAACAAGTGAAACAGCTGATGAAAGCACAAGACATCAACCCTGACCTTTACCTGCAGTATGACATCCGTCAGAAGGCTCTGAAGCTGACGGCTAACAGTATGTACGGCTGTCTGGGCTTTAGCTTCAGCCGCTTCTACGCCAAGCCACTGGCCGCGCTCGTTACACACAAGGGTAGAGAGATCCTGATGCACACCAAAGACATGGTTCAGAAGaTGAATCTGGAAGTGATCTATGGCGACACAGACTCCATCATGATCAACACCAACAGCTCCAGTCTGGAGGAGGTCTACAAACTAGGAAACAAGGTGAAAACTGAGGTGAACAAGCTCTACAAGCTCCTGGAGATTGACATCGACGGTGTGTTCAAGTCTCTGCTGCtgctgaagaagaagaagtacgCCGCCCTGGTGGTGGAGCCGCTGGGGGATGGCCGCTACAGCACCAAGCAGGAACTCAAGGGGCTGGACATCGTAAGAAGGGACTGGTGTGACCTCGCCAAGGAGTGTGGCAACTATGTGATTGGTCAAATCCTGTCGGACCAGAACCGTGATGTCATCGTGGAGAACATCCAGCGTCACCTTGTGGATTTGGGAGAGAAGGTCGCTAACGGAACCATTCCGCTCAACCAGTATGAGATACACAAGGCCCTGACTAAGGACCCCCAGGACTACCCAGACAAGAAGTCTCTTCCTCATGTTCACGTGGCTCTGTGGATCAACTCTCAGAGCGGACGAAGAGTTAAAGCTGGAGACACAGTCTCCTACATCATCTGCCAGgATGGTTCTACATTGGCAGCCAGTCAGAGGGCCTACGCGTTGGAGCAGCTCCAGAAGCAGGCCGGGCTGAGCCTGGACACCCAGTACTACCTTGCCCAGCAGGTGCACCCCGTGGTGGGCAGGATCTGTGAGCCCATTGAGGGTATCGACGGGGTCCTCATCGCTTCATGGCTGGGTCTGGACCCCAGTCAGTTCCGGGCCCAGCAGCAGgcgcagagagaggaggagggagatgggttCCTAGGAGCTCCGGTCCAACTCACTGATGAGGAGAAATATAAAGACTGTGAACGCTTCACATTCACCTGCCCTCTCTGTACCACTGATAACGTCTACGACAATGTGTTTGAGGGAGCGggTACGATGGTGGAGGCGGCTCTGCTGCGATGCTGCAACCCGACCTGTGGGGGGCGTCCTCTGGACTACcccacacacatcagcaacaAGCTGCTACTGGACATCCGCAAGCACATCAGGAAATACTACAGCgGTTGGTTGGTGTGTGAGGACCAGGCCTGTCAAAACCGGACTAGGAGGCTGCCTATCTCCTTCTCCAGATCTGGACCCATCTGTCCTGCCTGCACCCGCTCTACACTCAAACCAGAGTACTCTGAGAAAGCCCTGTACACCCAGCTGTGCTACTACAGATTCATCTTCGACTGGGAGTACGCTGTCAGCAAAGTACTACAGACCGACGAGAGAAcAAGGGTTAAGAAATTATGGAAGGCAGAGATGGAGGTCTACAGGAAGTTAAAAGATGTTCCAGACCGCTCCCTCCTTGCCAGCGGTTACTCTGAGGTCAACCTCTCCAAACTCTTTCAAGCCTTCACTTCCCTCAAGTAATTCCTGCGTCAACTCCTCCTTCACAGGTATTGGCCAGTGGGGATTTAATTATTTACATCTGTGGAGTCCTATAAGCATGCACGTTTGGACAGTGAAGGCCCCCACCTCCTCTGGATGTGACTATCATTATGGATGTGACTTGGTTTACTGAAAAGAAACTTGTTTTCTTAGACAACATATTTCTTGGTGACTGTCATCCCTCATGTTGCATGGGTGTTAAGGCATATAATGATTCTGGTAATGCTTATTGTACATGTTGCTTGTGTGTTTGATGAAGTTGCATCGACACTTGGCTCTTGATGCCTTTTCTTTGTATGTATGAACATTTTACTACATTTGAGTGAGATTAGGAGGACAGGGTGTATAGGGTCTTTGTATGAAATTAGGCCTTGATTTATATAGTGAGGTGTGTGTGAAAGATTACAGCCAATCGGTGTGACCCTTGCTCTCATATCAGCACATCTGTCTCTTATCAACCCATTATGATTGGCTGCTGAGATGGCTAAagactctctactccctccacaCACTGTCGAACACACACTCTGTGACCTAGTCACACTTTTTgggggggaggtggtggtggtgggtgacAATCAGCTAAACGAGACACCAGAGGATGACTGGGTGAGGGAGGCAGATGACTTCTCACACACATGGAATTAGCCAATGATACAAGCCCTGGCCAGTGAGTATACTGGACTCCTGCCGTGATTGGACACTTGTTAAAATTACCCccattcattgtgtgtgtgtgtgtgggggatggacagagagagaggatcggTGGTGAAATAGATGGGGTGAGGGAGGGCAGGAGTTGTTCTTTAATGTCCGTATTGAACAGGTGATGTCGCTCTCCAACCTTCCTCTGTTTAAGTGATGTCATTGGAATAGCCTCCTTCACACTTTCCTTTTCTGTTATGAAAATTGTTTTTTTAATGTGTGTAATTTTCCACTATTTCTCATTCTgaatgttgtattttttttagATTCCTAATCTTCTGTTTAGATACGGAAAGTGTTTTGTACAACATTTGATACTGAAgcttaaataaaagtgaaataactAAATGAAAA

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K02320 POLA1; DNA polymerase alpha subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085660 lncRNA upstream 81013 19384544 ~ 19385929 (+) True LOC110535439
TU1085633 lncRNA upstream 131296 19330013 ~ 19335646 (+) False LOC110535438
TU1085634 lncRNA upstream 131296 19330013 ~ 19335646 (+) True LOC110535438
TU1085623 lncRNA upstream 150989 19315600 ~ 19315953 (+) True G952064
TU1085613 lncRNA upstream 158650 19307438 ~ 19308292 (+) True LOC110535436
TU1085770 lncRNA downstream 38527 19599913 ~ 19600359 (+) True G952201
TU1085777 lncRNA downstream 50405 19611791 ~ 19613762 (+) True G952208
TU1085801 lncRNA downstream 79255 19640641 ~ 19641471 (+) True G952229
TU1086054 lncRNA downstream 122396 19683782 ~ 19684639 (+) True chodl
TU1086102 lncRNA downstream 167097 19728483 ~ 19730374 (+) True G952509
XM_021620433.2 mRNA upstream 40186 19415122 ~ 19426756 (+) True LOC110535441
XM_021620431.2 mRNA upstream 52206 19401522 ~ 19414736 (+) True LOC110535440
XM_036935124.1 mRNA upstream 81013 19377135 ~ 19385929 (+) False LOC110535439
XM_036935125.1 mRNA upstream 81013 19377135 ~ 19385929 (+) False LOC110535439
XM_036935126.1 mRNA upstream 81013 19377135 ~ 19385929 (+) False LOC110535439
XM_036936650.1 mRNA downstream 37065 19598451 ~ 19611053 (+) True hgd
trnac-gca-2 mRNA downstream 67954 19629340 ~ 19629411 (+) True trnac-gca-2
XM_036935132.1 mRNA downstream 111557 19672943 ~ 19684640 (+) False chodl
XM_021620443.2 mRNA downstream 111560 19672946 ~ 19684640 (+) False chodl
XM_021622342.2 mRNA downstream 163883 19725269 ~ 19734299 (+) True plcxd2
TU1085033 other upstream 339857 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 2865050 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 2921653 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 3131650 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 3140535 16323350 ~ 16326407 (+) True G948587
TU1086071 other downstream 199879 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3165167 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4103902 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4214386 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 5039085 24600471 ~ 24601653 (+) True G957942

Expression Profile