RNA id: XM_036936650.1


Basic Information

Item Value
RNA id XM_036936650.1
length 1353
RNA type mRNA
GC content 0.53
exon number 14
gene id hgd
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19598451 ~ 19611053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTGGGCTCAAGTACCTGAGTGGGTTTGGGAATGAGTTCTCATCTGAAGACCCTTGCTGTCCAGGAGCCTTACCTGAAGGTCAGAACAACCCTCAGGTGTGTCCCTACGGTCTCTACACTGAACAACTCTCCGGCTACGCTTTCACCTGCACACAGCCAAGCAATAAGATGAGTTGGTTCTACCGTATCCTGCCGTTTGTCCGTCACAAGCTGTACACCGCAATGCACTGTGGGAGCCTAACAGACAATTGGGATGAAGTGGAACCTGACCCTaaccagCTGCAATTGCTGCCATTCAGCATCACCAAATCCATTAAACCCTCTGGCTTTCCATGATAGCGATTAGCTGGTCTGCACACCCTATGTGGAGCAGGAGACACTAAGTCCCACAACAGGATCGGCATCCACATGTTCACCTGCAACACCTCCATggttgacagTTGCTTCAACAACTCAGACGGAGACTCTCATTGGTCTCATTGGCTCATTGCTCATTGGCTCATTCTCATTGTGCCCCAGCAGGGGGAGATTGTGATCACTACAGAGTTTGGGAAGATGATGGTGGAACCCAACGAGATCTGTGTCATCCAGAAAGAATTGCGTTTCAGTGGGGATGTGTTCGGGGAGACCAGAGGCTACGTGTTGGAGGTGTGCCAACCTGGGACCCATAGGTGTGTGTGACACCCGTTCGTTCACCCCTCCACGTGTCAATGCCTTGTCAACTCTCTGACTCCGGTGGCATGATATGACGACTGCAAGGTAGCCACAGGCTACACTGTCATCAACAAGTACCAGGGCAAGCTCTTCTCCAGccaacagatgtgtgatTTCTCTCCCTTTAACCTGGTGACGTGGCATGGGAACTACACACCGAACAAATACAACCTGGACATCTTCATGGTAATCAAGTGTGTGGTCTTCGAgcaCGAGGATCCTTCCATCTTCACGGTGTTGACAGCCAAGTCCACACGTCCAGGACTCACCATCGCTGACTTTGTCATCTTCCCCCCGCGCTGGGGAGTGGCTGACCACACCTTTAGACCCCCCTACTACCACAGGAACTGTATGAGTGAGTTCATGGGGCTGATTAAGAGCCACTATGAGGCCAAGGAGGAGGGCTTCCACATGATGACCCCTCACGGTCCTGACGGAGACTACTTCGAGTAGAAGAGCACCACTCCCCTCAAACCAGAGAGGGTGGCCGAGGGGTccatgCTCTTCATGTTTGAGTAGTCGTTCAGCATGGCGGTAACTAAGTGGGGCCTAGAGACGTGTCAGAGGCTGGACAAGAGCTACTGACAGCCACTCCGCAAACACTTTGACCCCAACTGGAGGCCCAGCAAACAGTAG

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085660 lncRNA upstream 212522 19384544 ~ 19385929 (+) True LOC110535439
TU1085633 lncRNA upstream 262805 19330013 ~ 19335646 (+) False LOC110535438
TU1085634 lncRNA upstream 262805 19330013 ~ 19335646 (+) True LOC110535438
TU1085623 lncRNA upstream 282498 19315600 ~ 19315953 (+) True G952064
TU1085613 lncRNA upstream 290159 19307438 ~ 19308292 (+) True LOC110535436
TU1085777 lncRNA downstream 738 19611791 ~ 19613762 (+) True G952208
TU1085801 lncRNA downstream 29588 19640641 ~ 19641471 (+) True G952229
TU1086054 lncRNA downstream 72729 19683782 ~ 19684639 (+) True chodl
TU1086102 lncRNA downstream 117430 19728483 ~ 19730374 (+) True G952509
TU1086070 lncRNA downstream 171488 19782541 ~ 19799150 (+) True phldb2b
XM_021620436.2 mRNA upstream 37065 19466942 ~ 19561386 (+) True pola1
XM_021620433.2 mRNA upstream 171695 19415122 ~ 19426756 (+) True LOC110535441
XM_021620431.2 mRNA upstream 183715 19401522 ~ 19414736 (+) True LOC110535440
XM_036935124.1 mRNA upstream 212522 19377135 ~ 19385929 (+) False LOC110535439
trnac-gca-2 mRNA downstream 18287 19629340 ~ 19629411 (+) True trnac-gca-2
XM_036935132.1 mRNA downstream 61890 19672943 ~ 19684640 (+) False chodl
XM_021620443.2 mRNA downstream 61893 19672946 ~ 19684640 (+) False chodl
XM_021622342.2 mRNA downstream 114216 19725269 ~ 19734299 (+) True plcxd2
XM_021620444.2 mRNA downstream 129512 19740565 ~ 19786240 (+) False phldb2b
TU1085033 other upstream 471366 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 2996559 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 3053162 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 3263159 16333057 ~ 16335292 (+) True LOC110535372
TU1081665 other upstream 3272044 16323350 ~ 16326407 (+) True G948587
TU1086071 other downstream 150212 19761265 ~ 19769353 (+) False phldb2b
TU1089657 other downstream 3115500 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 4054235 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 4164719 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 4989418 24600471 ~ 24601653 (+) True G957942

Expression Profile