RNA id: XM_036935134.1


Basic Information

Item Value
RNA id XM_036935134.1
length 3139
RNA type mRNA
GC content 0.49
exon number 15
gene id mtrr
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 19801737 ~ 19834454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGTAAGTTTTGTAAGGCGTTGAACGTGTTCAGTTATGTATTTTCTACAATGTTAGAAAAGGAGTTCCACGGGGATCTGCAACTAACTTTTCAATTTTCCGATTGTCAGAATGCCTTGTGAGGTGAAGCCCCGGTTCCTGGTTCTGTACGGGTCTCAGAAAGGCCAGGCACAGTCCATAGCCGAGGGGATAGCTGACGAGGCTGAGGAGAGGGGACTGGTTGCTGACATCTACTGCTTGAGTGAAGGAGGGAAGTTTAACTTGGAGAAGGAGAGTGCACCTGTGGTGTTTGTTGTGTCTACCACTGGGGATGGGGACCCACCAGACACGGCCCTGAAGTTTGTGAAGAACATAAAAAAAAAGACCCTGCCCAGCGACCACTATTCACACCTCTGCTATGCTCTTATAGCTCTGGGTGATACAAACTATGAAAATTTCTGCAACTGTGGGAAGACTATTGATGGCCGTCTACAGGAACTTGGTGCTAAACATTTCTACGCAACAGGACATGCAGATGATGGTGTAGGgctTGAGTTGGTGTTGGACCCCTGGCTTGAAGGACTCTGGGAGGCCATCAGAGGAGCGTTATCCAAGATGGCCACCCCTCAGCCTGAGAGGGATGGCCATGTAAGGGACCTGAGAGCATCGTTGAACAAAACACCCGAATTGTCAGTGACAGATGTCAAACTCCACCTCATGAGTCTTAAAGAATCAGAACCTCAGAGCTCTGGCTCACTCAGAACAGCAGCAGAGTCAGAGAGTACTAAGACTGAGCCCAAATCAGCTTCTCTGAATGTTACAGAAGCAGCCTCTGAGACAGGGAGTGCAGTTACTGATGTTAGACCAGTGTCATTGACCAGCAACAATAGGACTGCTCCTAAACTAGATGGTGTTGTCACTGATCCTGAGTCAGTGTTAGAGACACAGAGTGGAGCACCCTCTGCTGTTGTAGAGGCCTCTCTGACATGCTCCTTGCCTCCACTGTCTGAATCTGTCCTCAATGTCCCTGCTCTGCCTCCAGCCTACCTGGATGTCACGCTCCAGGAAGCCACCATAGAAGAAGAGACCAGTGCTCCGGTCAGTAAGGAAACCCTACACGAGGTTCCGATCTCCAGGGCAGTCCAGTTGACCAGAGATGACTCGGCTAAAACAGCCCTTCTGATAGAGCTGGACATCTCGGCCCATCCGATGGCCTACCAGCCTGGGGACTCGCTTGACGTTCTCTGCCCAAACAGAGCCTCTGAGGTGGGGGAGCTTCTCCAGAGACTCTGCCTGCAGGACCAGAGGAGCCACCGTGTCCAGCTCTCACTGCGCAAAGACACCAAGAAGAaagCTGCTCATCTCCCCTCCTACATCCCAGAGAACAGCACTCTAACCTACATGCTCACCTGGAGTCTGGAGCTCAGGACTGTCCCTAAGAAGGCATTTCTTCGTTCCCTGGTAGAGTGTACAGAAGACAGTGGCGAGAGGAGGAGACTACAGGAGCTGTGTAGTAAACAGGGATCAGCCGACTACAACCTCTATGTCAGAGACCCCAGCCTCGGAGTACTGGACCTGCTCAGGGCTTTTCCTGCCTGCCAACCCCCTCTCAGTCTTCTCATAGAACATTTGCCTAAACTGCAACCAAGACCGTACTCGGCGGCAAGctccAGTTTCAGACATCCAGGTCAGCTGCACTTTGTGTTCAACGTCATAGAGTTCCCAGCATGCACTTGGAGACCTACGGGGAGGCAGGGCCTGTGTACTGGTTGGCTCTCTGACCTCGTCAACCCCATTCTGTTGAACCCTAGGAAGGCTCAGCCCTCCACCACCCCGACCCTCCCTAAGGTCTTTGTGAGTCTGCGTGAGAACTGCTCCTTCCGCCTGCCCTCTGACCTCTCAAAACCCCTCATCATGATTGGACCAGGCACCGGCGTCGCGCCCTTCATTGGTTTCCTACAACAAAGggagaaggagagggaggaaaaccCGGAGGCAGAGTTTGGTGAGACCTGGCTGTTCTTCGGTTGTCGCCATAGAGATCGAGACTTCCTGTTTAGAGAGGAGCTGCAGGGGTTTGTGGGTAAAGGAACCCTGAACCATCTGAAAGTGTGTTTCTCGCGAGACACTCAGATGGGGACAGAGACCAAGACAGGTCCTAGATACGTCCAACATAACCTGCTCCTCCATGCCAAAGATCTCACCAACCTCCTCCTCAAGGAGAATGGATACCTCTACGTCTGCGGTGATGCTAAGAACATGGCTAAAGACGTGAACGAAACCCTGATAGAGATGATATCAGCAGAGCTTCAGCTGGATAAACTAGATGCCATGAAGAGATTGGCTGGACTCAGGGAGGAGAAACACTATTTACAGGACATATGGTGCTGAGTGGATGAATCTTCAACATATCTTATGTCACAGACCGAAAAGATCCATATAGAATTTTAGTGGGCCATTCATTTCCTTTAAGCAACACAAGCTGACCATATGCATGTTGTTCCTCTTGCCTCATTGCACCTGACCATAAACTTCATAAACTGACCATAGAAGATTGAGTTTCAAGTACTGTAGTTGTTTTATAGTGGAATTATGCAAGACTAACACACTGCCTGTTTAGCTTACTCCTCATCCTACTTCACATTCTTGTCTTCCAATACTTTTTTTGCTGTGTGCAAAAATGTGTCCAAAATACAAAAGGTGTGTTTGCTTGAAAAGGTTTAAAGGTCTCTGATGTATTTCTTATGCTCACTGTATGATGATAATGAGTGATACCTATCTTGGCACGCGTACAAGACGAGATGAAACCCATTCAGAGATAACGATCAAAGGTAATGCATTTTGATTGATATGGCATGATTGTGTTTTTAATTTGAGAATAATTCAATTGTTCAAGGTGACTTTCCTCACTAGATGAAGCTGTAGTCGGTGGTTAGTTAATTGAAGGATTTTCGCTATGGGCCTTCCACCGTACCCTAGAGAGACTTCTCAGAATTAAATCTTCAGACACTGCTAGTCTTTTTATATCAGCAGGCCTCTCGTCAGGATGGGAGAGGGAAAAGATGTTGACAGTCTCCACAGCTGGGCTAGACTGGGCTGGGGCTCTGTATGAGAATGGATGACAACATCACACTCAATAAAGCTTTGCCAAGTAAACAAA

Function

GO: NA

KEGG:

id description
K00597 MTRR; methionine synthase reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1086070 lncRNA upstream 2587 19782541 ~ 19799150 (+) True phldb2b
TU1086102 lncRNA upstream 71363 19728483 ~ 19730374 (+) True G952509
TU1086054 lncRNA upstream 117098 19683782 ~ 19684639 (+) True chodl
TU1085801 lncRNA upstream 160266 19640641 ~ 19641471 (+) True G952229
TU1085777 lncRNA upstream 187975 19611791 ~ 19613762 (+) True G952208
TU1086157 lncRNA downstream 24373 19858827 ~ 19859054 (+) True G952563
TU1086158 lncRNA downstream 26956 19861410 ~ 19861642 (+) True G952564
TU1086159 lncRNA downstream 28012 19862466 ~ 19862699 (+) True G952565
TU1086160 lncRNA downstream 28273 19862727 ~ 19862999 (+) True G952566
TU1086208 lncRNA downstream 95996 19930450 ~ 19932886 (+) True G952613
XM_021620444.2 mRNA upstream 15497 19740565 ~ 19786240 (+) False phldb2b
XM_021620445.2 mRNA upstream 15497 19740566 ~ 19786240 (+) False phldb2b
XM_021620446.2 mRNA upstream 15497 19740566 ~ 19786240 (+) False phldb2b
XM_021620448.2 mRNA upstream 15497 19761013 ~ 19786240 (+) False phldb2b
XM_021620449.2 mRNA upstream 15497 19761013 ~ 19786240 (+) False phldb2b
XM_036935144.1 mRNA downstream 366746 20201200 ~ 20203760 (+) True LOC110536583
XM_036935150.1 mRNA downstream 661018 20495472 ~ 20499005 (+) True cbln2b
XM_036935152.1 mRNA downstream 926117 20760571 ~ 20820549 (+) False rttn
XM_036935151.1 mRNA downstream 926118 20760572 ~ 20820549 (+) True rttn
XM_021620474.2 mRNA downstream 986709 20821163 ~ 20832090 (+) False cd226
TU1086071 other upstream 32384 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 674652 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 3199845 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 3256448 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 3466445 16333057 ~ 16335292 (+) True LOC110535372
TU1089657 other downstream 2892099 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 3830834 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 3941318 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 4766017 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 4960146 24794600 ~ 24795736 (+) True G958300

Expression Profile