RNA id: NM_001185053.1


Basic Information

Item Value
RNA id NM_001185053.1
length 3054
RNA type mRNA
GC content 0.54
exon number 13
gene id trpc1
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 21069765 ~ 21117062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGAGGACTGTCGGAAGCCTGCGAAGCGGTGCGAAAAAATGGTGCATGTAAACACGTTGATGGAGAGTTCTATTTATGCTCTGACTGCGTGCGGTATGTTTACATCTGAAGAAGAATAGCGTGTGTCAACGGGTTATTACGAGGAAACAACTGGGAAGGTCGTTACGCGCGCCAGACGCCGACGCTGCGTAAAAACGGATGAAACGTTAGCAACACGGATGCGACGACAATAATAGCttacatatatttatttattattccgGGAAGACGTTTACACCTGCCGTTCTTTGGGGGGGAAATACATTAACAGTCTTTTGCAGTATATGTCATCCCATGTGACGGGCTTTCATGGTTAAATGGTCGCTGGCGCCTAGTAGTGGGATGCACATCAGTGTCCTGCCCTACTCCTTCTCCGTCGCAATGGCCGCTCTATATCAGGTCACGGACGTGTCCTCTCCGGATAAATTTCTGGCCCTGAAAGACGTGAGGGAGGTGAAGGAGGAGACTACTCTGGATGAAAAGCTCTTCCTACTGGCCTGTGAGAAAGGTGACTACTACATGGTGAAgagactgctggaggagaagaCAGAGCTCAATATCAACTGTGTAGATGTGCTGGGGAGAGACGCTGTCACCATCTCTATAGAGAACCAAAACCTGGACATCCTTAAGCTTCTGCTGGAGCACGGctgccagGCAACAGATGCTCTGTTAGTGGCCATTGACTCGGAGGTGGTGGGAGCTGTGGACATCCTCCTCAACCATCACCCCAGGAGGTCCTCTAAGCCCTCCATCGCTaaacTGATGCAGCGCATCCAGAACCCCGAGTACTCCACCACCATGGACGTGGCTCCAGTGATCCTGGCGGCCCATAGGAACAACTATGAGATACTGACCATGTTGCTGAAGCAGGATATCTCCCTGCCCAGGCCTCACGCTGTGGGCTGCGAGTGTACTCTCTGTAATGCCAAGAACAAGAAGGACAGCCTACGGCACTCCAGGTTTCGTCTGGACATCTACAGGTGCCTGGCCAGCCCGTCTTTGATTATGCTGACCGAGGAGGACCCCATCCTCAGGGCCTTTGAGCTGAGTGCAGACCTCAGGGAGCTCAGCCTGGTCGAGGTGGAGTTCAgGAATGACTATGAGGAGCTGGCTAAGCAGTGTAAGATGTTTGCTAAGGATCTCCTGGCCCAGGCACGTAACTCCAGAGAACTGGAGGTGATCCTCAACCACATGGCCAATGAAGACACAGTGGACAAGAGAGGCCTGATGGAGGAACGCATGAACCTCAGCCGACTCAAACTAGCTATCAAGTACAACCAGAAAGAGTTTGTGGCCCAGTCCAACTGCCAGCAGTTCCTCAACACCGTCTGGTTCGGCGAGACGGCCAGCTACCGGCGTAAACACACGTGTCTGAAGATGTCCACGGTACTGAGCGTGGCGGTGCTGTGGCCGCTGCTCTCCCTGTGCTACCTAGTGGTGCCGCGCTCCCGCGTGGGCCATATCATCCACACGCCCTTCGTCAAGTTCATCATACACAGTGCCTCCTACTTCACCTTCCTCTTGCTCATCAACCTGTACTCTCTGGTGTACAACGAGGGCAAGAAGAACACCATGGGCCCTGCCCTGGAGATGATCGACTACCTGCTCATACTCTGGATCATAGGGATGGTGTGGTCGGACGTGAAGCGTCTATGGTACGAGGGCTTGGAGGACTTCCTGGATGAGTCGAGGAATCAGCTGAGCTTCGTCATGAACTCTCTCTACCTGTCCACCTTCGCCCTCAAGATAGTGGCTCACAgcaagTTTAAGAACGTGGAGGACACAGAGAGGAAAAATTGGGATGCCTTCCACCCCATCCTTGTGGCTGAGGGGCTGTTTGCCTTCGCTAACGTCCTGAGCTACCTACGACTGTTCTTCATGTACACCACCAGCTCAATACTGGGCCCACTGCAGATCTCCGTTGGCCAGATGCTGCAGGAGTTTGGTAAGTTCCTGGGTCTGTTTCTGCTGGTGCTCATCTCTTTCACCATCGGCCTGACGCAGCTCTACGGGAAGGATCAGAAGGACCCGGCCAAGAGTCCCGCCAAAGACTGTGAGGGCATCTTCTGTCAGCAGCAGAGCAACGACGCCTTCCACACGTTCATGGGAACGTGCTACGCACTGTTCTGGTACATCTTCTCTCTGGCCCACGTGGCTCTCTTCGTGACCCGGATCAACTACACGGAGGAGCTGAGGTCATTTGTGGGAGCCCTCATCGTGGGCACGTACAACATCGTGGTGGTCATCGTTCTCACCAAGCTGCTGGTCGCCATGCTCCACAAGAGCTTCAGGCAGATCGCTAACCACGAGGATAAGGAGTGGAAGTTTGCCCGCGCCAAGCTGTGGCTGAGCTACTTTGACGACAAGTGTACTCTGCCGCCGCCCTTCAACATCCTACCCTCCCCCAAGACTGTGTGTTACCTTCTGACCAGTATGAGTAAATGGATCTGCTCCCACACCTCCACGGGGAAGGTCAAGAGACAGAACAGCCTCAAGGAGTGGAGGAACCTGAAGCGGAAGCGTGATGAGAACTACCAGAAGATCATGTGTTGTCTTGTCCATCGCTACCTGACGTCCACCAGGCAGAAGATGCAGAGCACCGACCAGGCCACCGTAGAGAACCTCAACGACCTGCGGCAGGACCTCTCCAAGTTCCGCAACGAGATGAGAGACCTGCTGGGATTCAGAACCTCCAAGTACGCCATGTTCTACCCCCGGAGCTAAGACTGACCTGATCTGAACCtcaacccaacctcaacccaaccaTGTTCTACCCTTGGAGCTAGAACTGATCTGGTCTCAACCtacacccaacctcaacccaaccaTGTTCTACCCTTGGAGCTGGAACTGATCTGGTCTCAACCTACACCCAACCTCAACCAGCCAGCTAAGACTGGTCTCAACCCCAACATCAACCCCAACCACCTCTGTTAGCTTCTTCACCCAGGGGGTCCTATCTCTGACCCTAGCATGCTCAGAAATGACCTTGTGTCCAGTCACAGAGAGA

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
K04964 TRPC1; transient receptor potential cation channel subfamily C member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1087769 lncRNA upstream 1090 21068454 ~ 21068675 (+) True G954005
TU1087764 lncRNA upstream 3083 21064071 ~ 21066682 (+) True G954003
TU1087763 lncRNA upstream 3172 21064071 ~ 21066593 (+) False G954003
TU1087754 lncRNA upstream 10036 21059420 ~ 21059729 (+) True G953996
TU1087738 lncRNA upstream 37223 21032328 ~ 21032542 (+) True G953980
TU1087814 lncRNA downstream 58847 21175909 ~ 21177113 (+) True G954048
TU1087827 lncRNA downstream 82912 21199974 ~ 21203342 (+) True G954059
TU1087829 lncRNA downstream 82997 21200059 ~ 21202150 (+) True G954060
TU1087586 lncRNA downstream 146510 21263572 ~ 21263964 (+) True LOC110535467
TU1087562 lncRNA downstream 181490 21298552 ~ 21408884 (+) True G953832
XM_021620468.2 mRNA upstream 236383 20821163 ~ 20833382 (+) False cd226
XM_021620469.2 mRNA upstream 236383 20821163 ~ 20833382 (+) False cd226
XM_021620470.2 mRNA upstream 236383 20821163 ~ 20833382 (+) False cd226
XM_021620471.2 mRNA upstream 236383 20821163 ~ 20833382 (+) False cd226
XM_021620473.2 mRNA upstream 236383 20821163 ~ 20833382 (+) True cd226
XM_036935156.1 mRNA downstream 14421 21131483 ~ 21149309 (+) False LOC110535465
XM_021620478.2 mRNA downstream 14578 21131640 ~ 21149309 (+) False LOC110535465
XM_021620480.2 mRNA downstream 14578 21131640 ~ 21149309 (+) False LOC110535465
XM_036935158.1 mRNA downstream 24411 21141473 ~ 21149309 (+) False LOC110535465
XM_036935157.1 mRNA downstream 24800 21141862 ~ 21149309 (+) True LOC110535465
TU1086071 other upstream 1300412 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 1942680 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 4467873 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 4524476 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 4734473 16333057 ~ 16335292 (+) True LOC110535372
TU1089657 other downstream 1609491 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 2548226 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 2658710 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 3483409 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 3677538 24794600 ~ 24795736 (+) True G958300

Expression Profile