RNA id: XM_036935183.1


Basic Information

Item Value
RNA id XM_036935183.1
length 1562
RNA type mRNA
GC content 0.51
exon number 5
gene id olfm3a
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22326089 ~ 22356408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGTCTTCCCAACACCCAGGATACACACCAAATGATGTCATATCCGTTGTGCGACTCCCCTGCAGCCTCGTACATCTGTCTCGTCCCCTGGCATAAACTTTTCTCTGTGGTGTCACTGGTGTGTGTTGATCAGACCGGCGCGTTGGCTCTGCTTCACACAAGAGTCCTCGGAGCGTTGGGAATGAACGCGGATCTATCCGTCTTGTTCCATTGGAGCGCTCTGAACGGCGGTGGGCACAGCCAATACAGGCAGCGACGCGGACGCATTCCTGCAACGAGGGCTGTGGGTGAATAAAGCGAGAAAAGTGTAACTGTTCCCGATAGACAGAATGCGTGCTCTATTTAGTGTCCTGTACCCGGTGATTTCAATCACGGTCTTCGGATTATATCCGTCAATGGtgcagaacatgtcccagtccattgAGGTGTTGAACCTACGGACTCAGAGGGACTTCCAGTATGTCATGAAGATGGAGAATCAGATGAAAGGGCTCCGGACTAAGTTCAGACAGGTAGAAGATGACAGGAAGACTATTATGGCCAAGAATTTCCAGGAGCTTAAGGAGAAGATGGATGAGCTGCAGCCTCTGATCCCTGTGTTGGAGCAGTACAAGACAGACGCCCAGCTCATCTCCTCCTTTAAAGAGGAGATCAGAAACCTGTCCATGGTGCTCACAGCTATCCAGGAGGAGATGGGGGCATACGACTATGACGAGCTCTACCAGAGGGTGCTGAGACTGGACAGCAGGCTCCGCAACTGCATGGGCAAACTCACATGTGGGAAATTAATGAAAATCACTGGACCTGTAACAATAAAGACATCTGGCACCCGGTTTGGGGCATGGATGACTGATCCACAGGCCTCTCAGAGAAACAACAGGGTCTGGTACATGGACAGCTACACCAACAGTAAGATTGTCCGTGAGTACAAGACCATGGAAGAGTTTGTGGCTAATGTGGTGTCTCGAACGTACAACCTTCCATTTAAATGGGAAGGAACCGGTCACGTGGTATACAATGGATCCCTGTACTACAACAAGTATCAGAGTAACATCATCGTGAAGTACAGTTTTGAGACAGGTCGGGTGCTGGCTCAGCGGGCTCTGGAGTACGCCGGCTTCCACAATACCTACCCCTACTCCTGGGGCGGATACTCCGACATCGATGTCATGGCCGACGAACTGGGCATGTGGGTGGTGTACGCAACCAATCAGAACGCAGGAAATATCGTCATCGCCCAGATGGACCCGGACACCCTGGAAGTCCAGAAGACATGGAACACGGAATATTCCAAACGGAATGCGGGGGAATCCTTTATGATCTGCGGAACACTCTACATCACCAACTCTCACCTGACGGGTGCCAAGGTCTACTACTCATACTCCACCAAGACCTCCAGCTATGAGTACACAGACATCCCCTTCCACAACCAGTACTTTCACATGTCCATGTTAGACTATAACGCCAGGGAGAGGGCGCTCTATGCCTGGAACAATGGACACCAGGTGCTGTTCAATGTCACTCTGTTCCACGTCATCAAAACCGAAGATGACTCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1089285 lncRNA upstream 76775 22248144 ~ 22249314 (+) True G955349
TU1089263 lncRNA upstream 113945 22211916 ~ 22212144 (+) True G955329
TU1089157 lncRNA upstream 190332 22135522 ~ 22135757 (+) True G955239
TU1089153 lncRNA upstream 194664 22131138 ~ 22131425 (+) True G955235
TU1089149 lncRNA upstream 201510 22123826 ~ 22124579 (+) True G955231
TU1089414 lncRNA downstream 4564 22360201 ~ 22360521 (+) True G955462
TU1089415 lncRNA downstream 6039 22361676 ~ 22361893 (+) True G955463
TU1089433 lncRNA downstream 39092 22394729 ~ 22454322 (+) True G955481
TU1089443 lncRNA downstream 51026 22406663 ~ 22407684 (+) False G955488
TU1089444 lncRNA downstream 51026 22406663 ~ 22407684 (+) False G955488
XM_036935175.1 mRNA upstream 21572 22215859 ~ 22304517 (+) False col11a1a
XM_036935176.1 mRNA upstream 21572 22215859 ~ 22304517 (+) False col11a1a
XM_036935177.1 mRNA upstream 21572 22215859 ~ 22304517 (+) False col11a1a
XM_036935180.1 mRNA upstream 21572 22215859 ~ 22304517 (+) False col11a1a
XM_036935179.1 mRNA upstream 21572 22215860 ~ 22304517 (+) False col11a1a
XM_036935185.1 mRNA downstream 36758 22392395 ~ 22405735 (+) True LOC110535481
XM_021620509.2 mRNA downstream 185962 22541599 ~ 22554183 (+) True LOC110535485
XM_036935191.1 mRNA downstream 201472 22557109 ~ 22564107 (+) False LOC110535486
XM_036935190.1 mRNA downstream 201486 22557123 ~ 22564107 (+) False LOC110535486
XM_021620510.2 mRNA downstream 201502 22557139 ~ 22564107 (+) False LOC110535486
TU1086071 other upstream 2556736 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 3199004 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 5724197 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 5780800 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 5990797 16333057 ~ 16335292 (+) True LOC110535372
TU1089657 other downstream 370916 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 1309651 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 1420135 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 2244834 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 2438963 24794600 ~ 24795736 (+) True G958300

Expression Profile