RNA id: XM_036935185.1


Basic Information

Item Value
RNA id XM_036935185.1
length 2253
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110535481
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22392395 ~ 22405735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATCTTTGTCAGCCTGGACCCTGCCAAGGGCTTCCCCAAGTGCCCTGGCATCGagtagaagagagggatgagggagagaaattgAGGGTGTTGTGTTTCTGGAGTGTCTGTGGTGCTACTCTCAGATGAACAGATGAGCAGTGAGggcagggagtgagagaaagagagatggagggagggaaggagtgaaggagggagaggaggggttcAGTGCTGGGATTGTCACGGGAAGGGAAGGAACTGCTCCTTCAgagtgtgtgaggtgtgaggGGCACTTGTACTAAGGAACATAGGAGAAGGACATACTGTATAAACCTACAATATGAGCAGAACCACCTTCTTTGAGgtggaggttctggatggcaggaccAGGCAACAGCTTTGTTTTCTAGATAAGGTGGAGCCCCATGCTACAATAGGAGAAATCAAGAGTCTTTTTCACAAGTCATatcAACAGTTGTATCCAGCCAGACAGGACCTCAAGCTCGACCCCAAAGGAAAATCACTGAGGGATGACGATGTATTACAAAACCTACCAGTTGGGACCACAGCAACCATATATTTTAAGGACCTGGGCCCACAGGTTGGGTGGACAATGGTGTTTTTAGCGGAGTACCTTGGTCCTCTGTTTATCTACCTCCTGTTCTATTTCCGAGCTCCGTACATCTACTCACACCAGGATGTGTTCACCTCCAGCCCCTACTCAGTGGTCACaCTAGCCTGTGCCTGTCACACCTGCCACTACATCAAGAGGTTGATTGAGGCTATCTTTGTGCACCGGTTCTCCCATGGTACCATGCCTCTCAGGACTATAGTCAGGAACTGTGTATATTACTGGGCCTTCTCAGCATGGTTGGCCTTCTACATCAACCATCCACTGTATACACCACCATCGTATGGGGATATGCAAGTGAACTATGCACTGGCCATATTTGTGCTCTGTGAGTTAGGGAATTTCTCCATTCACGTGGCCCTGAATAACCTCAAGGCAGAAGGTGGGCCCAAGTGCAGAAGGTTCCCTCACCCGACGAAAAACCCATTCACATGGCTGTTCTTCTTCGTGTCCTGCCCCAATTATACCTACGAGGTAGGAGCCTGGGCGAGTTTCTCTGTCATGACCCAGTGTCTACCAGTGGCCTTGTTCACCTTCTTAGCTTTCATCCAGATGACCATCTGGGCCAAAGGGAAGCATAAAACCTACTCCAGGGAGTTTAAGGACTACCCTCACCTGCGCATGCCAATCATCCCGCTCCTCCTCTGACCACGCTACAAAGGTTTACCATTCGGACTGGAGCATTGGGGTCTTCAGCCTGCTTGAAAGGTTGTGATCATTAGTGGGTTACTGTGTTTCTCACAAAGCAAGAAGACCCACTGCTCCTTCATCTATCGCCATGGCAATGGTCTGTTATCTTTTCAACAACCACTATGCAAGGTTAGACTATGCCATTGTCTTAGAAAGAGGAGGAAACCAACCGGGTTAAAGATTCATAGACATGGAGTATTGTTGACGTGTGGATGAACTTTTAATGAATATATAATAGTGAATTGACAGAAAGGAATGTCTCATCTCAACAATACTGTTGATGAACTGCTAATGATCATTTCTGCATTGATAATGTTTAGTTCAATCATTGAAACACAGCCTTATTAAGGAGTCATTGGTATTAGTCCTGTTACTGATCATGTACAGTGCAGCTACTGAATGTTCCGACAATTGTTGGCATTCTTAGTCTACAGAGTGGCAATCATCTGAAAACTATGAAGTTATGAATACATGATTGAAGTTCTATATAATCTACCATGTTATTTAGTAATAAGTTATTGTCATTCCCTagaggaaatgtgtgtgtgtgtgtaacttgaTATGATATACCTGCTAAGGAAGTCTTTATAATGACTGAAGTGTAACGGGGCTATTTTCAGTAGGGAAAGCTGAGTTCTAGAACCAGGAGATGGAACACAGAATTAGGAGATGTCTAAGTTTGCAAGCTGATTATTTCCCCCTCTACAATGAAGCTGTAGATGTTTGAATGTAACGAACAACCTGATGCTTTTACCTTTGTCAGACAGTTGAGGATAATTCAGTAATGTATTACTTTATATATCGTTCAAGATAACTACAATCTGTCAAATTCTCAGGTGTTACTAGATGCAACAGGTACCTGTTTATATACTGTACAAATGATAGCCAAACTCGTTTTGTATACAAAGTGTAAATATCAAATAAATAATTTCGATAATTTCAAAGATAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K10258 TER, TSC13, CER10; very-long-chain enoyl-CoA reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1089415 lncRNA upstream 30502 22361676 ~ 22361893 (+) True G955463
TU1089414 lncRNA upstream 31874 22360201 ~ 22360521 (+) True G955462
TU1089285 lncRNA upstream 143081 22248144 ~ 22249314 (+) True G955349
TU1089263 lncRNA upstream 180251 22211916 ~ 22212144 (+) True G955329
TU1089157 lncRNA upstream 256638 22135522 ~ 22135757 (+) True G955239
TU1089443 lncRNA downstream 928 22406663 ~ 22407684 (+) False G955488
TU1089444 lncRNA downstream 928 22406663 ~ 22407684 (+) False G955488
TU1089446 lncRNA downstream 928 22406663 ~ 22407684 (+) False G955488
TU1089448 lncRNA downstream 928 22406663 ~ 22407173 (+) True G955488
TU1089450 lncRNA downstream 2579 22408314 ~ 22413868 (+) True G955490
XM_021620502.2 mRNA upstream 35987 22326091 ~ 22356408 (+) False olfm3a
XM_021620501.2 mRNA upstream 35987 22326104 ~ 22356408 (+) True olfm3a
XM_036935183.1 mRNA upstream 36758 22326089 ~ 22355637 (+) False olfm3a
XM_036935184.1 mRNA upstream 43139 22345993 ~ 22349256 (+) True LOC118937330
XM_036935177.1 mRNA upstream 87878 22215859 ~ 22304517 (+) False col11a1a
XM_021620509.2 mRNA downstream 135864 22541599 ~ 22554183 (+) True LOC110535485
XM_036935191.1 mRNA downstream 151374 22557109 ~ 22564107 (+) False LOC110535486
XM_036935190.1 mRNA downstream 151388 22557123 ~ 22564107 (+) False LOC110535486
XM_021620510.2 mRNA downstream 151404 22557139 ~ 22564107 (+) False LOC110535486
XM_036935192.1 mRNA downstream 151404 22557139 ~ 22564107 (+) False LOC110535486
TU1086071 other upstream 2623042 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 3265310 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 5790503 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 5847106 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 6057103 16333057 ~ 16335292 (+) True LOC110535372
TU1089657 other downstream 320818 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 1259553 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 1370037 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 2194736 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 2388865 24794600 ~ 24795736 (+) True G958300

Expression Profile