RNA id: XM_036935190.1


Basic Information

Item Value
RNA id XM_036935190.1
length 1653
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110535486
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22557109 ~ 22564107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGACTGTAAATACGTCCAGGAACAGTTCTAAAGAGAACAAATGGAAATCTTCTTCCTGTAACAGCGTGTGACACACTGACCAACTGCTCAACTGTTCGTTTTCTTTGTTAGTAAGTCTATTCCTCTCCACTCTGGCATAATGGATAGGTTGTATCTGCTGCTACTGGTGTGCTTACATTCATTCTGTCCTCACTGCCAACCACTGGGCCAAGCATCGCTGCGGTTCAttgggctgggggactggggagGACTCCCGCTCTTCCCTTACTACACCCCTCATGAGGAGGCCATCGCTGAGGAGATGTCCTGGGCAGCCCAGACCCTGGGACTGGACTTTGTCCTCAGTCTGGGAGACCACTTCTACTATGGCGGAGTGAAGGACGTGGATGACCCACGCTTCAAGCACACCTTCGAGCGTGTCTTCTCTCAACCATCACTCGTTGACGTCCCATGGTACCTTGTGGCGGGAAACCACGACCATCTAAAAAATGTGTCTGCTCAGATTGCTTACTCCAACAGATCGGGGAGATGGAGGTTCCCTGAGTTGTACTATGAGCTCCAGTTCAAGGTTCCCCAGAGTAACGTGTCTGTGACCGTCCTGATGGTTGACACCGTAGTGCTCTGTGGGAACACCTATGAGGGGACCCAGCCCAAAGGAGAAGAGGACCCGGAGGCTGCTGCCAAGCAGTTCGACTGGATCAACTCCAGACTGGCAAACAGCAAGTCAGAGTTCATTGTGGTAGCTGGTCACTATCCTGTGTGGTCCATTGGTGATCACGGCCCCACTAAGTGTCTTGTGGATAGACTACGGCCACTGCTGAAGAAGTACGATGTCACAGTCTACCTGAGTGGTCATGACCACAGTATACAGTTTATCAGAGAGGATGATGGGAGTTCTTATGTGGTCAGCGGGAGTGGGGCCTTTACAGAAATGTCCATTCATAACATCAACAGCTTCCCGACTTCATGGCAACGGTTCTCCAACGCTGTCAACCATACATCCGGTGGGTTCGCTTACTTTGAAGTCACAGAGAACAATATGACTGTCAGCTACATCCAGACTGATGGGAAATGTGTTTAccaaacaggactggcaaaacGCAAAGTCTGACACAGGCAATGTCATCACGAGATAGTCAACAATCAACTACTGCAGGCTAATATGCTGACTGTTTCTAAGAGCATACTGTATCTTTAAGCAGTTTACAAAACTGAAAACATCTCATTCTAGTTCAATTCATCTTTTAACTCTGTTTTCTTTTGGTTAATAATTGTCTTGGACTGTAACAAAACAATGTTTTATATGATTTTCTCTGAATTGCAATTCTAATGTAATTTTAATGTTTTGAATGTGTTCTATTTTTCTTGAAAATCCACGCCCACAAAAATTGTGTGAAATAATTGTGAGTTGAATGACCTGTAGATGGTGCTGGTTAGATCTTTTTGCAGGAACTATACAAGACTGATGTCTGCTGTGATAAAGATGACGTAACTTGAGCATTCTCACCAGAGCGTAGTCACATTAACATAACATACCCCACTATTCCACGATGTCTCATATCAAAGATAAACACATTACCACAAATGAATGGTAAGACTTTATTATGAAAATGCCAATAAAATCAAACAAGAGTACCATATTAGTACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1089499 lncRNA upstream 75520 22478451 ~ 22481603 (+) True G955531
TU1089464 lncRNA upstream 130838 22424931 ~ 22426285 (+) True G955501
TU1089461 lncRNA upstream 133917 22420813 ~ 22423206 (+) True G955498
TU1089450 lncRNA upstream 143255 22408314 ~ 22413868 (+) True G955490
TU1089448 lncRNA upstream 149950 22406663 ~ 22407173 (+) True G955488
TU1089547 lncRNA downstream 7826 22571933 ~ 22626610 (+) True G955575
TU1089725 lncRNA downstream 263898 22828005 ~ 22828323 (+) True G955741
TU1089769 lncRNA downstream 328973 22893080 ~ 22976240 (+) True G955785
TU1089800 lncRNA downstream 416026 22980133 ~ 22980463 (+) True G955814
TU1089817 lncRNA downstream 443553 23007660 ~ 23064013 (+) True G955830
XM_021620509.2 mRNA upstream 2940 22541599 ~ 22554183 (+) True LOC110535485
XM_036935185.1 mRNA upstream 151388 22392395 ~ 22405735 (+) True LOC110535481
XM_021620502.2 mRNA upstream 200715 22326091 ~ 22356408 (+) False olfm3a
XM_036935197.1 mRNA downstream 148470 22712577 ~ 22741263 (+) False tlcd4a
XM_036935198.1 mRNA downstream 148471 22712578 ~ 22741263 (+) False tlcd4a
XM_021620516.2 mRNA downstream 162426 22726533 ~ 22735020 (+) False tlcd4a
XM_021620517.2 mRNA downstream 186616 22750723 ~ 22756977 (+) False LOC110535493
XM_021620518.2 mRNA downstream 186621 22750728 ~ 22756977 (+) False LOC110535493
TU1086071 other upstream 2787770 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 3430038 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 5955231 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 6011834 16543815 ~ 16545289 (+) False LOC110535387
TU1081649 other upstream 6221831 16333057 ~ 16335292 (+) True LOC110535372
TU1089657 other downstream 162446 22726553 ~ 22741247 (+) True tlcd4a
TU1090807 other downstream 1101181 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 1211665 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 2036364 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 2230493 24794600 ~ 24795736 (+) True G958300

Expression Profile