RNA id: XM_021620521.2


Basic Information

Item Value
RNA id XM_021620521.2
length 3202
RNA type mRNA
GC content 0.45
exon number 13
gene id ptbp2a
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 22951161 ~ 22966803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATTTCCGCCTTATTCGACTATTTCCGCCACGGTCTCCAGTCCCTCCATTTTGTTTTCTGTTGTTGGCAAGAGAACATTTCAGAAAACTGAGTTGTTTAGAAGGATTTTCTGGCAATGGACGGTATTGGAGATGTTGCAGTTGGCGTAAAGaGAGGATCAGATGAGCTGCTGTCAAGCAGTCTCTACAACAGTGGCTCTGACATGAGCAGTATCAGTGATGGTACGTCCAACGGGAGTGACAGTAAAAAACTGAGAGTGGAAGACAGGATGGAGGCTCCTCCTTCTCGTGTGTTGCACATCAGAAAACTGCCCAACGAAACTTCAGAAACGGAGGTCATTGCCCTGGGGTTACCTTTCGGGAAGGTCACCAATATCCTGACTCTGAAGGGAAAAAACCAGGCTTTCTTGGAGCTGGGGACAGAGGAAGCGGCAATTACTATGGTcaactactactctactgtgacACCGCATGTTCGTAATGTCCCCGTATTCATCCAGTACTCCAACCACAAAGAACTCAAAACGGACGCCGGAAACCAGCGGGCCCAGGCGGTCCTGCAGGCGGTGTCAGCGGTCCAAGGAGGCGGTACCCCTACATCGGGTTCAGATCTGGCTCTAACAGCTGCATCCAGCCCTGTGCTCAGAATAATCATTGACAACATGTTCTACCCTGTCACTCTGGATGTGCTGCAGCAGATCTTCTCAAAGTTCGGCACGGTCATGAAGATAATCACATTCACTAAGAACAATCAGTTCCAGGCCCTGCTGCAGTTCAACGACCCATCTACCGCACAGCAAGCCAAAATTGCCCTGGATGGTCAGAACATCTACAACTCGTGCTGTACGCTCCGCATCGATTACTCCAAGCTGGTCAACCTGAATGTCAAGTACAACAACGACAAGAGCCGTGACTACACCCGGCCAGAGCTCCCCGCCGGGGATGGACAGCCTGCCATGGACCCCAACATGGCTGCTGCCTTTCAAGGCAAGGACTCCAACTCTCTGCTTGGTGCGCTGAGCCCGCTGAATGCTGCGGCGGCGGCGGCGGCTGCTGCAGGGAGGGTGGCTCTGTCTGGTCACTCTGGCTCCAGCGGCGTGCTCCTGGCCTCCAACCTCAATGAAGAGATGGTTACGCCCCAAAGTCTGTTTACTCTCTTCGGGGTCTATGGGGACACCCAGAGGGTGAAGATTCTTTACAATAAGAAGGACAGTGCTCTGATACAGATGGCCGATGCCAGTCAGGCCCAGCTAGCGATGAGTCACCTGAACGGTCAGAAGATGTATGGGAAGGTCATCAGGGTGGCTCTGTCCAAGCACACCTCAGTGCAGCTGCCCAGGGATGGACTGGATGACCAGGGCCTTACCAAGGACTTCACCAACTCCCCCCTGCACCGCTTCAAGAAGCCCGGCTCCAAGAACTTTCAGAacatcttccctccctccaccacccttCACCTCTCCAACATCCCAACGGACGTAACTGAAGAAGACCTGAGACTACTGTTCTCCAATGCCGGGGGCACTGTGAACGCATTCAAGTTTTTCCAGGATCACAAAATGGCGCTGCTCCAGATGTCGACGGTGGAAGAGGCCATCCAGGGTCTGATCGACCTCCACAACTACAACATGGGTGACAACCACCACCTGAGAGTGTCCTTCTCCAAATCCTCCATCTAAACCAGCATAATGATCCTCCACAATATCCATCGCTTTCTGTTTCCAAATGGCCTTTGGCTGCCGTTCGTTTATCCGGTTCACTCTTTCCAGACGGGGGGGGACCACATTTTGACCTCATTGTAGTTCTTTCTATTTTTGTCTTTCTACGTGTTATCAGTCATTCCTTCAGAGAACCAGAAACTAAAatgtgtattaaaaaaaaaagttgttgtACTTGTATGTTTTTGAGGGTGTTTTACCCCCTTCACCTGACCCCTGTGTAAGTCCCATATTCCATTTGTATGATAGGCAAACCATTTTCTTTTTCCATCTTCTTATGAAGGGTGGATGAATGGACTTTGGTGTCTCTTTATGATTAGTTATATAAGATATGTGCCTTACCTGACAATATCAACTCTTTTTACATTTAAATATTTACACGAATCCCTGCAGTCAGATTTTGAGGCACATTCATTTTGATGTGTAAGATTAGTTCAAAACATGATTTCTGTTCTCCCATGTGTCTGTGCAGTTTGAACTGCCGCCACCCCAAAAAACGTCCCCTTTTTTGTTGTAGGTGTTGAGTTTGTGCTAGATTTTATTTTGTTAGTCACTAGTTGTGGAGTGGGGAACCATATGAGATTGAAGTTGAATCAGACTTTTTACATCTGTTTTTTTTGTGCTAACTTGGACCACCATGCTTGAGTTTCCATCTGTATGATTATTTTAACTGTTTGATTCCACAGGTCATCCATTTACTAAAATAGTCCATGTTGCTGTTCTTTAGGTGTtaggttttttttgggggggggggtgtacatgGGTAGAAGTTGAGTGGTTTCCTAAGCATGTACTGCCTGGTCTAGTTATTGGAATTAAAAGTTGGTAGTACTTTATTCATTTGAACTGTACTTCATAACTGTCATTGTCCTACAGGTGATGAAACGAATGTCATGGCGATTATTATGAAGTACAGTTTAAATGAAGTGTTACGAGATCTGCTGTTGCATGCGTTTTAGAAGAGTATCTGTAGTGACGTCAACGTGTTGCAGTTTACTGATGAGGGTTGGGACCAAAGTGTATGTGCCTTTTTTGTTTTTAGTTTTAATTTACATCTCATCGCCAAGGAAAGGAACAATATTTTAGTGAACCGCTGATATATTTTGTATATCTGAACAAATAAGATACAGGACCTGATTCAGAATCAACAACCTTCATTCCTTCTATGGTTATTTTAAGCTGATCTACATGTAATACCCACAATAGTTTGAAGAATCCCACAACCTCAACTTCCTAGAAAACGAGATTGTTTTTCAAGATAAGTCATGTATATTTTCTATCAGTTACATTTTTACAGCTCTAGAAATGTAATATTCAGATATAGTTTGGAAGCGGCACAATTAAAATAATTTTCTAACAAATTGGGATATTTGGTCTGACTTAGTTGTTTTGAGATATTTTTTTCTCCACTTTTTATCTTCTCTCTTGTGTGTACTTTACTTTACCTGTGTAGCATGCTCAATAAACTCTTCTGTAGCTCTGTA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1089725 lncRNA upstream 122838 22828005 ~ 22828323 (+) True G955741
TU1089547 lncRNA upstream 324551 22571933 ~ 22626610 (+) True G955575
TU1089557 lncRNA upstream 390057 22560466 ~ 22561104 (+) True G955585
TU1089499 lncRNA upstream 469558 22478451 ~ 22481603 (+) True G955531
TU1089464 lncRNA upstream 524876 22424931 ~ 22426285 (+) True G955501
TU1089800 lncRNA downstream 13330 22980133 ~ 22980463 (+) True G955814
TU1089817 lncRNA downstream 40857 23007660 ~ 23064013 (+) True G955830
TU1089842 lncRNA downstream 87314 23054117 ~ 23073461 (+) True G955854
TU1089908 lncRNA downstream 213171 23179974 ~ 23184228 (+) True G955919
TU1090502 lncRNA downstream 280630 23247433 ~ 23247727 (+) True G956465
XM_021620517.2 mRNA upstream 194184 22750723 ~ 22756977 (+) False LOC110535493
XM_021620518.2 mRNA upstream 194184 22750728 ~ 22756977 (+) False LOC110535493
XM_036935199.1 mRNA upstream 194184 22750951 ~ 22756977 (+) True LOC110535493
XM_036935198.1 mRNA upstream 209898 22712578 ~ 22741263 (+) False tlcd4a
XM_036935203.1 mRNA downstream 362947 23329750 ~ 23365999 (+) False snx7
XM_036935204.1 mRNA downstream 362950 23329753 ~ 23365999 (+) False snx7
XM_036935205.1 mRNA downstream 371043 23337846 ~ 23365999 (+) True snx7
XM_021620525.2 mRNA downstream 414726 23381529 ~ 23387293 (+) False LOC110535498
XR_005034600.1 mRNA downstream 508332 23475135 ~ 23477150 (+) True LOC118937334
TU1089657 other upstream 209914 22726553 ~ 22741247 (+) True tlcd4a
TU1086071 other upstream 3181808 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 3824076 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 6349269 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 6405872 16543815 ~ 16545289 (+) False LOC110535387
TU1090807 other downstream 698485 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 808969 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 1633668 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 1827797 24794600 ~ 24795736 (+) True G958300
TU1095116 other downstream 3746822 26713625 ~ 26797294 (+) False G960696

Expression Profile