RNA id: XM_036935204.1


Basic Information

Item Value
RNA id XM_036935204.1
length 1881
RNA type mRNA
GC content 0.49
exon number 9
gene id snx7
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23329750 ~ 23365999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATTGAATTCACTCAAATTCTGAAATTATACTGAGTTTCAGCAGCAGCGACTGCTGATGATGTCCCCGTAGCCTACATTGTCGGTGTAAATCTGGGCAGCTATGAGTAGAACTATCGACGCTGTTGTGTCCCCCACCCAAACAAATACAATACCTGCCGACATCTCCGGACAGATGTTAGATCTAGACGAGGACGACGATTTAGAAGTTTTCAGCAAGGATTCGACTCTTGCAGACGGGAATATGTTCAACGCCTCAATGCCGACATCCCCAGGCTCCATGGTCAACCAGTGTAAGTTTGAGGAGGACGAGGAGAGTGACTCTAAAGACATCTTCATTACAGTGGACAACCCAGAGAGTCATGTGACTGCCATTGAGACCTTCATCACCTACAGAGTTCTGACCaagaCCACACGGAGTGAGTTTGACAACTCTGAGTACGAAGTCCGCAGGCGCTACCAAGACTTCCTCTGGCTCAAAGGGAAACTGGAGGATACCCACTCAACTCTCATTGTTCATCCTCTGCCAGAGAAGTTTGTGGTGAAGGGGATGGTGGAGAGGTTCAATGGTGATTTCATCGAGACACGGAGGAAAGCTCTCCACAAGTTCCTTAATCGCGTTGCTGATCACCCCATTCTGTCCTGCAGCGAAGACTTCAAAGTCTTCCTTAGTGCTCAGGCCTGGGAGCTGACAACCTATAAGAAGCAAGGCCCGGGGTTCCTGAGCAGGATGGGGGAAACGGTGCGAGCGGTGGCTAACTCAGTCAGAGGGGTGAAGAACCGGCCAGAGGAGTTCACCGCCATCCAGGAGTACGTGGAGGATTTCAGCAACAAGATCGGCTCTCTGGACAAAGTCACCCAGAGGATCGTCAAAGAACAGAAAGAGTACCTGGAGGAGCTAAAGGAGTACGGGCCCACCTACACCCTGTGGTCTGGCTCGGAGGAGGAGCTGGCAGAGCAGTTGAAAGGTGTAGCCGGCTGCATAGAGAGGTGCTGTaaagagacagaggaacaggTCGGCCATCTCTCAGACACCCTGGTGCCTGTTTTACACGAGTATGTCCTGTGTGCTGAGACACTCAAGGCAGTATTGAGACGGAGGGATAACATTCAGGCGGAATTTGAGGCCAAGAATGAAGCTCTGGCCACCAAGAAAGTTGACCGCGATGCActgaaGGAGGAGATTGATAAACTGGAGGACCGTGTGGAATGGGCCAACAATGCTCTGAAGGGGGACTGGGGCCGATGGCAGAGGAGCATGAGAGGAGACCTTAAATCAGCCTTCCTCTCCACCGCAGAGAAGAACGTAGACTACTACGAGAAGTGTCTGGCAGTGTGGGAGACCTTCCTTCTCTCCCAGAGAACAGAACCCAGCGAGgagactgacagagacaacaCCCCCTAACCTCCACGATACACTTCTTCTCTATTACGCAACCCTCTGCCTACTACCCCCTACCCAGGGGGCACAGCCAAAGACATCTTCCAGCACAACCCGGAGGATTCCTGGAATTTAACCCTGATCATTCCAATGAAGCTTCACTTTAAAGTCACTTTAGCACAGACTGTGATAAATCTGAGAGATCTTTAAATATGCATGATCAGCCAGCCGCTGCCTTAGGGCTTCTGTATGTACAGCCCTGGATCTGAGGGTAGATATACTGAGTACACTGATGGATCCCCCATGATTTTCACAGCAATACAATGACGTACTTTACTTGTTTACCTGTTTTACAATGACTCACTATGGTATTTTGATAACAGAAAATAAACTAAAGAGtgccacttttttttattttatactatACACATTTTTCTATTTGTAAAGCTTTAAATTGGGTTTTTAAGATGTTGGCATAATAAATGGATTGCTAAATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1090573 lncRNA upstream 46188 23283357 ~ 23283565 (+) True G956507
TU1090555 lncRNA upstream 52105 23277204 ~ 23277648 (+) True G956498
TU1090554 lncRNA upstream 53156 23276382 ~ 23276597 (+) True G956497
TU1090544 lncRNA upstream 54633 23272872 ~ 23275120 (+) False G956496
TU1090636 lncRNA downstream 4318 23370317 ~ 23370563 (+) True G956569
TU1090608 lncRNA downstream 19280 23385279 ~ 23387901 (+) True LOC110535498
TU1090665 lncRNA downstream 46326 23412325 ~ 23416289 (+) True G956597
TU1090735 lncRNA downstream 127073 23493072 ~ 23493446 (+) True G956657
TU1090760 lncRNA downstream 178495 23544494 ~ 23544728 (+) True G956682
XM_021620520.2 mRNA upstream 362950 22951161 ~ 22966803 (+) False ptbp2a
XM_021620521.2 mRNA upstream 362950 22951161 ~ 22966803 (+) True ptbp2a
XM_021620517.2 mRNA upstream 572776 22750723 ~ 22756977 (+) False LOC110535493
XM_021620525.2 mRNA downstream 15530 23381529 ~ 23387293 (+) False LOC110535498
XR_005034600.1 mRNA downstream 109136 23475135 ~ 23477150 (+) True LOC118937334
XM_021620531.2 mRNA downstream 128910 23494909 ~ 23531354 (+) True LOC110535500
XM_021620534.2 mRNA downstream 197676 23563675 ~ 23604917 (+) False palmdb
XM_036935211.1 mRNA downstream 224840 23590839 ~ 23594014 (+) True LOC118936499
TU1089657 other upstream 588506 22726553 ~ 22741247 (+) True tlcd4a
TU1086071 other upstream 3560400 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 4202668 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 6727861 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 6784464 16543815 ~ 16545289 (+) False LOC110535387
TU1090807 other downstream 299289 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 409773 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 1234472 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 1428601 24794600 ~ 24795736 (+) True G958300
TU1095116 other downstream 3347626 26713625 ~ 26797294 (+) False G960696

Expression Profile