RNA id: XM_021620525.2


Basic Information

Item Value
RNA id XM_021620525.2
length 4290
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110535498
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23381529 ~ 23387901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagacaactatacagaaaacgctcaaattgctgaaataagtacatggaatcaatgatgagagaatagtgAGATTAACTGATTAGTAAAATAGCAGTGGAGATGGCACTCTTTTGCTTAGAGATGTAGTATAGGTAATGAATCTGTAGATGACTCCTGAGAATGCTACGTAGTTTGTGGTGCAGGAAAAAGATCAGCATACTCAGAATCCAGAGATTGTGAGTCCCAGGTCGGGTCATATTGAAAAGTTAGCACTAAGTGATCATGTCAAGTGTAATCATATTGATTAAAGATGTTTACGCTATTTTAGCTGAACAGCGTACCACTTACCTTGAAACACCCATACCATTTTATTATATTTTCATGTTTTCACCTCACCTGTAAATCTCACATGTGAATTGCAGATTTACATGTGACATTGCAGTTTCACATTTGAAAATCTTTCATCTGCGAAAATGTTCAAATGTTGGGGAAATTTTGCATCCATCCCCATGTCACATTTATTTCACGAGATCTTGTTTTCTCATGTAGCTTaatgttatcacattaacttcacatgaGATCACGTGAAATTTATGTGGTTTTTCCGTAAGGGTGGTAACACTCTTGGCTTTTGGGTCTGTTTGCTTGAGGGAATTTTTTTCCTATGCTATTTTTATGTTATTTCTTTTCTAAAGAATGTGTGTGATGAAAAAGCTGAGGGTAAACATCACTGACATTAGTGTCAAGGCTTTGTAGTATGGCTGAGAACAAACATACCTATCCTGTTTCATCATTAAATCTGTAACGATGGCATTTTCTCCATGTAAATGATTCACTTTGTCTTCTATCACTTTTGCATTTGTAATGAGCTGATTTCAATGCGTTGGTTCGAGGGCTCGTGCTGTAGCCTAACACACTCCCACAGCTGAGTAGTGTGACAAGATTAGAGCTGTAAACATGAACATTCTCCCGTAATGTTTTTCTCCCCCAGATGAGAATGAATTTCACGGACGCCAGAGGGTTAGAAGAGAGTTAAACCTGAACTGCAGATGTTTGGATGTGAGGAATATCGTAGTGTCGTCCCATTTGATAACTGGGCCACGGTCCTATGCAGTAGAAGAAGTGGGGGATgggatggagatagaggagaagcTCACTTCCAATCGCGTTCCTCTCCCAGTGAAATCTCCTAGACAGCTCCAGAATAACCCCTGCTGGGAGAGATTTAACACGTCCAATTCCAACTGTGCTCAGACGCATTCCCAAACGGGCGTCGACGATCCTCCACCTCAGAAGAATAGAAAAGTTGCTCAAAGCAAAAAATATTTCTCACCACAATCTGAACAAACAAACATCAAACAACAGAGACTGAAGCAGCGACTTCTGCCACTGACCAGGTCCCATTGGGGCCCAGCCTCTtcatgtgttttgtgtgtagagCAGTCTGCAGAGGAACTAGCAGTGCCATGGCGGTGTAGGGCGATGGTGGCACAGAACCCTGAACCATCTCGGCTCCCTTCCAGAATCCTGCCAAACCTCCAAAACACAATTAGAGCATCTGGCTGTGAGATACTGGAGCTGTGCCGACGTATGTCCTCTAGGATGAACTATGTGAACCATGTGAGCCCGACCACATCTGGAACTGGAACTAGACCGGTGGGTTGGAGGTTGCTTGGGAAGCCCGTAGGGGACAGTGGAGCACAGGTGCGGGTCAGTCAACCAGAACACCCCTCCTGGAATGTGAGAAAGTTCTCTGGGGCATCAGTTGACAGCCACAGTCTCACCAGCCTTCTGCATAATAGTGATTGTGGTTCTGGTGTATCCAGGGGCAGCCAGACCCAGACACATCTTCCAGATACTGGGCTCTCTGGCTGTGCTAAAGACAGCAAAGGAGACAGCCAACAGCATGGATGGAAGGTCAGCAGATCCAGGAGGGAccagagaggtggaggtggggttggAAAAGGGAGACAGATGCCCAGAGAAGAATCCTTGCGGTGGGGTGAAGGATCAACATGGCCTTGGGACTCCGAGAGTCAGTCAAGGAACCAGCGGCAGAACGAGTCCCCAACAGACTGTGATGTCACCCTACTGCACATTGTGCATCTTTTACAGTGTAGGTCAGTCAATCTGTCTCATGTCAGGGAAGAAGGACAATTTGGAGATGATTTTCAACATATCCTTCACAACAGACAAACTTGACTCAAGCAAATAGCAAGATATTTAGTATTCAGAGTAGGTTAGTGAATGGACAGGAGGAGCGAGCAATCTTgatataattattttttattccAAGACTGTAAATTGAATTTTGTCTACAGTGTAAAAGGTCATGATAAAAAGACAAAGGAATGAAATAGAAGTTTGGTAAAACAACTGGGTGACCAGAATATCAACAACATCCATACAAACTGATTCACTATGCTAAATAATGACAATGTAACAGTCTGACTTCAAACCAGGGAAGAACAAGAAGAAAaacctgtcatttaaaaaaaagatcaGTAGCTAGGTTGCATGAAACTCTTGTCTATGGACCAAAAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACAAAAAGGTATGAATGTGTAGTTTAACCAAATGTATGAGTATGTAGTTTAATCAAATGTATGATTATGTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAGCGTATGAGTCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAATGTATGAGTATCTAGTGTAACCAAGCGTATGAGTCTAGTTTAACCAAATTTATGAGTATGTAGTGTAACCAAATGTATGAGTATGTAGTGTAACCAAATGTATGAGTATGTAGTGTAACCAAGTGTATGAGTATGTAGTTTAACTAAATGTATGAGTATGTAGTGTGACAAAAAGTTCTGAGTATGCAGTAGAGGTTGTAATACAACATAAATAGAGAAAATATTAAAGTCAGAGTataaaaaaatcaaaacataGTCATGTGCACTTGTATAACATGGTATAGCTATGTTAAAGTAATACTAGTCCAttaacacatgtactgtactttttgtgaacaaacacacacatacatacagtgcacaACCATAAGAAAATAGACAGCCATAATGTCTGACAGAAGGATACAGTATGTATACATTTTATACAATTCACTTTTTCCATCATTTGAATATAATAACACTAACCGTTAGGTCTTGCAATGCACATGTTAGCAGATTTTACAAATCCTGAATGTTCTAGACATAATTACGTATATTTTCCAAGCAGCAGCGGTATGGGCGGCCATCTTGCCTGCGTTTCTGAGTCAAGCTTGATTTTAAAGTGCTGCTGTTATCATGTTCCTGTGTTGTTGTGTCCTTTATGATAGTTCAGTGCTTTAGTGATCATtacaaaaatatagatttcagGGGCAACATAATGGGGACATCAATATTatgctctgctcttctctactcatGGGCAAAACAGTCAGAAAATGAATGTTATTGCTCCTCTTAAAACTATTTTCGCATTGACTGGGGTTGGTCGATCGAATCGCAGCTTGCATCCCAAAGTACAGTTTTATTTCTGCACACTCTGAGGTGTCTTAGGACGAAAGACCCGTTTTAAATTTCACCAGTGACAGATGTGGTATTGTTGAACCTCAGTTACATACATTAATATCTGAGAGAATCATAGTAAGACAATGACGTTTCACCATAACACAACAAATCTCAATATTGGCCTGTGAGACAGTGACACAGTTCCCTGTCACATGCGTTCATATGTATCAACAATAGACTTAAAGTAATTACTAAACGATTAGCGACATTGTGCTCCATTCACTATATCCCTTCCACACCAGAGAGAGCTgaataaagagagagtgagagagagagcgagagagagagagggagagagagagagagagagagagagagagagagagagagaggagacacgcACGCTGACACACAGATGACAACCAACCCCTCTTCGAGCTCCAAGTGATGGCGTATCAGCTTTAGGAACTGCCACATGAAGCAACATGAATAAAAGTGAAGCAACATGAATAAAAATGAAGCAACATGAATCAAAGTCTAACCAACATCATTGGTTTGCATTTCTCATAATCTGGGGTTGAAATATATGTCCCTGTATGTGGCAACAGGGACATTTTTGAATCTACAAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1090636 lncRNA upstream 10966 23370317 ~ 23370563 (+) True G956569
TU1090631 lncRNA upstream 21661 23358901 ~ 23359868 (+) True G956564
TU1090573 lncRNA upstream 97964 23283357 ~ 23283565 (+) True G956507
TU1090555 lncRNA upstream 103881 23277204 ~ 23277648 (+) True G956498
TU1090554 lncRNA upstream 104932 23276382 ~ 23276597 (+) True G956497
TU1090665 lncRNA downstream 25032 23412325 ~ 23416289 (+) True G956597
TU1090735 lncRNA downstream 105779 23493072 ~ 23493446 (+) True G956657
TU1090760 lncRNA downstream 157201 23544494 ~ 23544728 (+) True G956682
TU1090811 lncRNA downstream 290787 23678080 ~ 23681424 (+) True G956732
TU1090818 lncRNA downstream 300982 23688275 ~ 23688480 (+) True G956739
XM_036935203.1 mRNA upstream 15530 23329750 ~ 23365999 (+) False snx7
XM_036935204.1 mRNA upstream 15530 23329753 ~ 23365999 (+) False snx7
XM_036935205.1 mRNA upstream 15530 23337846 ~ 23365999 (+) True snx7
XM_021620520.2 mRNA upstream 414726 22951161 ~ 22966803 (+) False ptbp2a
XM_021620521.2 mRNA upstream 414726 22951161 ~ 22966803 (+) True ptbp2a
XR_005034600.1 mRNA downstream 87842 23475135 ~ 23477150 (+) True LOC118937334
XM_021620531.2 mRNA downstream 107616 23494909 ~ 23531354 (+) True LOC110535500
XM_021620534.2 mRNA downstream 176382 23563675 ~ 23604917 (+) False palmdb
XM_036935211.1 mRNA downstream 203546 23590839 ~ 23594014 (+) True LOC118936499
XM_021620535.2 mRNA downstream 208145 23595438 ~ 23604917 (+) True palmdb
TU1089657 other upstream 640282 22726553 ~ 22741247 (+) True tlcd4a
TU1086071 other upstream 3612176 19761265 ~ 19769353 (+) False phldb2b
TU1085033 other upstream 4254444 19126665 ~ 19127085 (+) True G951511
TU1081800 other upstream 6779637 16554200 ~ 16601892 (+) True G948710
TU1081652 other upstream 6836240 16543815 ~ 16545289 (+) False LOC110535387
TU1090807 other downstream 277995 23665288 ~ 23665930 (+) True G956728
TU1090885 other downstream 388479 23775772 ~ 23776845 (+) True G956797
TU1092128 other downstream 1213178 24600471 ~ 24601653 (+) True G957942
TU1092512 other downstream 1407307 24794600 ~ 24795736 (+) True G958300
TU1095116 other downstream 3326332 26713625 ~ 26797294 (+) False G960696

Expression Profile